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LOCUS XM_017153595 1982 bp mRNA linear INV 09-DEC-2024 (Shmt), mRNA. ACCESSION XM_017153595 VERSION XM_017153595.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153595.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1982 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1982 /gene="Shmt" /note="serine hydroxymethyl transferase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108065581" CDS 223..1839 /gene="Shmt" /codon_start=1 /product="serine hydroxymethyltransferase" /protein_id="XP_017009084.2" /db_xref="GeneID:108065581" /translation="MQQARSTLPQKLRFCFSRDLNTQVKNPVNFASRKLSGALTRVAA RNQTLSPSALFSAIRRFSDCKQSALKNMADQKMLQTPLEQGDPELADLIKKEKERQRE GLEMIASENFTSVAVLESLSSCLTNKYSEGYPGKRYYGGNEFIDRVELLAQKRGRELF NLEDDKWGVNVQPYSGSPANLAVYTGVCRPHDRIMGLDLPDGGHLTHGFFTPTKKISA TSIFFESMPYKVNPETGIIDYDKLAEAAKTFRPQIIIAGISCYSRLLDYARFRQICDD VGAYLMADMAHVAGIVAAGLIPSPFEYADIVTTTTHKTLRGPRAGVIFFRKGVRSTKA NGEKILYDLEERINQAVFPSLQGGPHNNAVGGIATAFRQAKTPEFKAYQTQVLRNAKV LCDGLISRGYQVATGGTDVHLVLVDVRKAGLTGAKAEYILEEVGIACNKNTVPGDKSA LNPSGIRLGTPALTTRGLAEQDIEQVVAFIDAALKVGAQAAKAASSPKLADYHKALDE NAEIKAQVEEIRRGVAQFSRKFPLPGLENL" misc_feature 448..1830 /gene="Shmt" /note="serine hydroxymethyltransferase; Provisional; Region: PLN03226" /db_xref="CDD:215639" misc_feature order(478..480,484..486,505..510,535..537,550..552, 604..606,658..663,685..687,742..744,763..765,883..888, 1300..1302,1354..1356) /gene="Shmt" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99733" misc_feature order(547..549,607..609,637..639,748..753,832..834, 997..999,1072..1074,1081..1083,1156..1161,1177..1179, 1591..1593) /gene="Shmt" /note="glycine-pyridoxal phosphate binding site [chemical binding]; other site" /db_xref="CDD:99733" misc_feature order(547..549,832..834,1159..1161,1591..1593) /gene="Shmt" /note="active site" /db_xref="CDD:99733" misc_feature order(613..615,634..636,817..819,829..831,835..837, 1276..1278,1546..1548) /gene="Shmt" /note="folate binding site [chemical binding]; other site" /db_xref="CDD:99733" polyA_site 1982 /gene="Shmt" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttacgcgtg tttttgattt tttgtggaat tctggaattt cggatgctgg ccaagagata 61 acgaccagag gcagtggaac tcttgggcgg ccttatcacg gggttacggg tcaggggtta 121 tcttaatcgc ttatcagctg agttcagtcg tttccatctc ctcggcggcg acgcttgttt 181 ttttccggca gttccgattc gaacgcagcc gtatccatag acatgcagca ggcgcgctct 241 acactgccac aaaagcttcg gttttgcttt agtcgggacc tgaacaccca agttaagaac 301 ccggttaact tcgcctcgag aaagctgagc ggagctttaa ctcgcgtcgc cgccagaaat 361 cagacgctat cgccatcggc attattctcg gcgatcagac gattttcgga ctgcaaacag 421 agcgctttaa agaacatggc cgatcagaag atgctgcaaa ccccgctgga gcagggagat 481 cccgagttgg ccgatctgat caagaaggag aaggagcgcc agcgcgaggg tctcgagatg 541 atcgccagcg agaacttcac ctcggtggcg gtgctcgaga gtctgagctc ctgcctcacc 601 aacaagtact ccgagggata tcccggcaag aggtactatg gaggcaacga gttcatcgac 661 cgcgtggagc tgctcgccca gaagcgaggt cgcgagctgt tcaacctgga ggacgacaag 721 tggggcgtca atgtgcagcc ctattcggga tctccggcca atttggccgt ctacacgggc 781 gtctgtcgtc cccacgaccg aattatgggt ttggatctgc ccgacggtgg tcacttgacg 841 cacggcttct tcacgcccac caagaaaatc tcggccacgt ccattttctt cgagagcatg 901 ccgtacaagg tgaatccgga gacgggcatc attgactacg acaagttggc ggaggcggcg 961 aagacgttcc gtccccagat catcattgcc ggcatctcgt gttactcgcg cctgctcgac 1021 tatgcgagat tccgtcagat ttgcgacgat gtgggcgcct atctgatggc cgacatggcc 1081 catgtggcgg gcatcgtggc cgccggattg attccgtcgc cctttgagta cgccgacatt 1141 gtgactacga cgacgcataa aaccttgaga ggtcctcgcg ccggcgtcat cttcttccgc 1201 aagggagtgc gcagcacgaa ggcgaacggc gagaagatcc tgtacgatct ggaggagcgc 1261 atcaaccagg cggtcttccc ctcgctccag ggtggtccgc acaacaatgc ggtgggcggc 1321 attgccaccg ccttcaggca ggcaaagacg cccgaattca aggcctatca gacgcaggtg 1381 ctccggaatg ccaaagtcct gtgcgatggg ctcatctcgc ggggctatca ggtggccacc 1441 ggcggcaccg atgtccactt ggtgctggtc gatgtccgca aggccggctt gacgggagcc 1501 aaggcggaat atatcctgga ggaggtgggc attgcctgca acaagaacac agtgccgggc 1561 gacaaatccg cgctgaatcc ttcgggcatt cgattgggca caccggctct gaccactcgc 1621 ggtctcgccg agcaggacat cgagcaggtg gtggccttca tcgatgccgc cttgaaggtg 1681 ggcgcccagg cggccaaagc ggccagcagt cccaagttgg ccgactacca caaggcgctg 1741 gacgagaatg cggagatcaa ggcccaggtg gaggagatcc gcaggggagt ggcccagttc 1801 agcaggaagt tcccgctgcc cggtctggag aacctctaat tcgttgatcg tctttttttt 1861 taccctcttt atttgcaccc tcgaaaacga aaaagaaatc ttatgaattg caaattttcc 1921 acaatattca agtgaaatag tagttaagtc attaaacgca ttttaattta catatatcat 1981 aa