PREDICTED: Drosophila takahashii roughex (rux), mRNA.

LOCUS       XM_017153518            1386 bp    mRNA    linear   INV 09-DEC-2024
ACCESSION   XM_017153518
VERSION     XM_017153518.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017153518.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1386
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1386
                     /gene="rux"
                     /note="roughex; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 6 Proteins"
                     /db_xref="GeneID:108065514"
     CDS             138..1121
                     /gene="rux"
                     /codon_start=1
                     /product="cell cycle negative regulator roughex"
                     /protein_id="XP_017009007.2"
                     /db_xref="GeneID:108065514"
                     /translation="MNIPEQHAGTPLEVVHEFVKGVDDGTVRRDLAEDCILNFYSRNV
                     RGVRAITGFLRSQLTNRYQHAGFDEAAAPSIGDELLLQERFGRAFDRERRRIYEQKEH
                     EWTTTLHLRPESDDEEVIEQHPIAQITPPRPSSYALHSLKYVEAIGQLKRRGVLSYGG
                     LDLGESCTVHLTLGYRTTQLPGSQVRGIEICLAVYDRGLTSLKRSTLAAPPSARSLPR
                     RGNGRCNPSTDDEGEDLPSPPSSRRGVRRTLFTEENAEEEEDPDPNPAVQQEQPARQV
                     ETPERPQEEVISTLDSPRSSGSIYTPRKRQQPANGNEVAPKRTPGPQRMRF"
     misc_feature    165..1118
                     /gene="rux"
                     /note="Drosophila roughex protein; Region: Roughex;
                     pfam06020"
                     /db_xref="CDD:310540"
     polyA_site      1386
                     /gene="rux"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agcatttctc agagcgtccg gtagaaaaca ttctatcaac aaacgccgtc ttgactatat
       61 tctattttgt aaattattta tattttttta agtgaaaagc cgcatgaccg gcgcttctgg
      121 aagcaaggag gcacgcaatg aacataccgg agcagcacgc ggggacgccc ttggaggtgg
      181 tccatgagtt tgtcaagggc gtggacgacg gcaccgtgcg ccgcgacctg gccgaggact
      241 gcatcctcaa cttctacagc cgcaatgtgc ggggcgtgag ggcgatcact ggttttctgc
      301 gtagtcagct gacgaatcgc taccagcacg cgggattcga tgaggcggcg gcgcccagca
      361 ttggcgacga gctgctcctg caggagcgct tcggcagagc cttcgaccgc gagcggcgtc
      421 gcatctacga gcagaaggag cacgagtgga ccaccaccct gcatctgcgt cccgagagcg
      481 acgacgagga ggtgatcgag cagcatccca tagcccagat cacgccgccg cgtccctcga
      541 gctacgccct gcattcgctg aaatatgtgg aggccattgg ccagctgaag agacgcggag
      601 tactcagcta tggcggcctg gacctgggcg agtcctgcac ggtccacctc actctgggct
      661 atcgcaccac ccagctgccg ggcagccaag tgcgcggcat cgagatctgc ctggctgtct
      721 acgaccgcgg gctgacgagc ctcaagcgat ccaccttggc agctccgccg tctgctagat
      781 cccttccacg acgtggcaat ggccgctgca atccgagcac agacgacgag ggcgaggacc
      841 ttccttcgcc accgagcagc cgtcgtggcg tccggcgtac gctgttcaca gaggagaacg
      901 ccgaggagga agaggatccc gacccgaatc ccgcggtgca gcaggagcag ccagctcgac
      961 aggtggagac accggagaga ccacaagagg aggttattag taccttagat tccccccgat
     1021 catcaggcag catctataca ccaaggaaac gccaacagcc agccaatggc aacgaagtgg
     1081 cacccaaacg cacgccggga ccacagcgga tgcgtttcta ggcccaaaga ggtctagaga
     1141 agacagatta tgaaaccgag ttagccccta gttgcttttc caaatctccg tagcacaatt
     1201 ctctatttta ggctttagga ggatagttga taccccacaa atttccgtaa tattttgaag
     1261 aagactgatt gcacccgttt cggtcccgcc ttcagggacc ccgcgtcgcg ctaggctaat
     1321 cccgaatatg tattgtatta cataatccca tgtatttatt tgtgtattaa agttcagtgt
     1381 taatta