PREDICTED: Drosophila takahashii Cytochrome c oxidase assembly

LOCUS       XM_017153503            1213 bp    mRNA    linear   INV 09-DEC-2024
            factor 7 (Coa7), transcript variant X1, mRNA.
ACCESSION   XM_017153503
VERSION     XM_017153503.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017153503.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1213
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1213
                     /gene="Coa7"
                     /note="Cytochrome c oxidase assembly factor 7; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins"
                     /db_xref="GeneID:108065502"
     CDS             70..870
                     /gene="Coa7"
                     /codon_start=1
                     /product="cytochrome c oxidase assembly factor 7 homolog"
                     /protein_id="XP_017008992.1"
                     /db_xref="GeneID:108065502"
                     /translation="MAYDLKKESDVKEYVDKLGVEYRFGCYSEKKPEACHLLGDYLEG
                     IKKDFEKASKVYKSTCDDYGYAKSCYKYGNYSFLGKGKSGSKGDPRVAYEYYEKGCNL
                     NDSDACLHSGLLLVSRSMPKEIDRNVPKGLEFLTKSCDMNNATACFYLSGMHISGVQK
                     KPDQSAVAASAGSGPTAPPAGKTPLKDSDYIVLKDMKKAFQFAHKACELRNMYACANL
                     SQMYARGDGIEKNEKEAEKYKKLALEMQDEVKKQQETLGFQQGVGMPN"
     misc_feature    <163..801
                     /gene="Coa7"
                     /note="TPR repeat [General function prediction only];
                     Region: TPR; COG0790"
                     /db_xref="CDD:440553"
     misc_feature    211..303
                     /gene="Coa7"
                     /note="SLR repeat [structural motif]; Region: SLR repeat"
                     /db_xref="CDD:276807"
     misc_feature    331..420
                     /gene="Coa7"
                     /note="SLR repeat [structural motif]; Region: SLR repeat"
                     /db_xref="CDD:276807"
     misc_feature    448..537
                     /gene="Coa7"
                     /note="SLR repeat [structural motif]; Region: SLR repeat"
                     /db_xref="CDD:276807"
     misc_feature    652..741
                     /gene="Coa7"
                     /note="SLR repeat [structural motif]; Region: SLR repeat"
                     /db_xref="CDD:276807"
     polyA_site      1213
                     /gene="Coa7"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atatttttga catccctaga aagcataaca taataatttt tggttgttat ctattaaaaa
       61 tcgctgacca tggcctacga cctaaagaag gagtcggacg tgaaggagta cgtggacaag
      121 ttgggcgtgg agtaccgatt cgggtgttac tccgagaaaa agccggaagc ctgccacctg
      181 ctgggtgact acctggaggg catcaagaag gacttcgaaa aggcctccaa ggtgtacaaa
      241 tcgacgtgcg acgactacgg ttacgcaaag tcctgctaca aatacggcaa ctacagcttc
      301 ctaggcaagg gcaagagcgg cagcaagggg gatccccgag tggcctacga gtactacgag
      361 aagggctgca acctgaacga ctcggatgcc tgccttcact ccggcctgct tctcgtctcg
      421 aggtccatgc ccaaggagat cgacagaaat gtgcccaagg gcttggaatt cctgaccaag
      481 agctgcgaca tgaacaacgc taccgcctgc ttttacctat ccggcatgca catctcgggc
      541 gtgcaaaaga agcctgacca gagcgcggtg gctgcatccg ccggaagtgg gccaacagca
      601 ccacccgccg gaaagacgcc cttgaaggac tcggactaca ttgtgctaaa agacatgaag
      661 aaggcgttcc agttcgccca taaggcgtgc gagcttcgca acatgtatgc gtgcgccaat
      721 ctcagccaga tgtacgcccg gggcgatgga attgagaaaa acgagaagga ggccgagaag
      781 tacaaaaagc tagccttgga gatgcaagat gaggtcaaga agcagcagga gacgctaggg
      841 ttccagcagg gcgtgggcat gcccaattga ttcagattca gtttgattcc tgctactaac
      901 tattgctgtt atttcgccat cgcttagtcc actgtttttt ttgtcttcat gcgtatcatt
      961 atcaggtttc ccttttcagt cggtctaaca ttagtggcta aactaactaa cttgtgtttg
     1021 taatttctgt gtacatagcg ggcatttaca tgcgacggag cgagagagag aaggcgtaac
     1081 gaagagaaat tcatagtttt aattgttaaa gttatcaagt aacaaatgag aaacccttaa
     1141 accattctgt tgatacctta tatacaaaat ataaaccagt cctaccaaag gacgttgtcg
     1201 taaaactcca tta