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LOCUS XM_017153464 3903 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017153464 VERSION XM_017153464.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153464.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3903 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3903 /gene="fs(1)Yb" /note="female sterile (1) Yb; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108065465" CDS 136..3420 /gene="fs(1)Yb" /codon_start=1 /product="putative ATP-dependent RNA helicase SoYb" /protein_id="XP_017008953.2" /db_xref="GeneID:108065465" /translation="MKPSEDLKVPSFTGEYTGSTFTYASPKSGADSLDFLAQTIRGRD PNTCRIILICQQNFEAEHLKSELAGRDVNTILLAADDPMANQVLLLWSKGYIHQALIL CDSMLNILEGLEVNFVIHTSLPPLKKFEQRLERLRKSEIKAESLVITAHYGGNGNSDN KIVKADTEMLQSPKNGVNESPKMLDKPQPLEDVPIKDIKPVVKVDPIYLRNLSEKEFE RFKSSKDDEAKSVFNPTGAFSAIQDFNTPVVLEPIPKSLDDKEAQSSLKVEDIMKEFL KLTIGSKTPESQCDYKEDPSSFRVEGNVEEFGPSEEVSSSEASELELQSLLMSRRLQS ALPELESSPEPPYPPQIVTIAEPLSLDLLDDTASLDSFQTVEDSPSPSISPDSLTAGG TIVYNYGILSWSRHLVVPCYDLSGVPGISHKIRVAMHQMGVARSRARAVQRFAWPHVA AGRSLIVVGNTQIGKTWCYLPILCQRSHEELQLRRPSDDHGPTSIVVCSNQSQGQQIG RSMDTLLRSLGNDSSLETMVSHWDMGNVTDILGRLSQPVGILLTSVDLLLQLLTHHSK RSPIFDAAAVKFIALDNLHDMVRLLPDVTMRLLKRLPEIFDFSPSKCQLFVSGRNWHP DLMRQRLLPLMPEVLLLFDDALEASVYGGVQLDTRIVPEEQKIEELVALIRQKNLSED RTIVCCSSAAEVLHLRHQLDGMGIAVQTCISESCFNQVSQWRRQSPASLLLVADDVVP KLRCGFIALLIHFNWATSWMRFKHRFSLFHENYKSMPAKRCSKSVIFCQATDVDSIWL MADFLLKHGLPRPSHLLDILAQRRLAEPLHPMRLRLCRQVTAFGDCLRNSCRYRHLVW QQEVVPPYHYPTKGEIRFTVLTCNSPASLSVRLNDQYPTVAYFLRIPMTNLGQQVQRH YELEENRRRHPNPAPGERVVVKNMNRYERVVILEVNKEGNGNGKVSVQLMDTGTDILI YNASQVYICEKIFKDQPREAMEVRITGLEPESLDRIWPEDVRNVVRNQFFSRTQNRRC RQFSAVVQATIHETIFVRDVHDSEGNDLRTFVSSRFRVHQEEHCLDKLIRMVQGSKPR PAPKSH" misc_feature 1459..>1890 /gene="fs(1)Yb" /note="N-terminal helicase domain of the DEAD-box helicase superfamily; Region: DEAD-like_helicase_N; cl28899" /db_xref="CDD:475120" misc_feature order(1516..1536,1879..1881) /gene="fs(1)Yb" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:350670" misc_feature <2863..3162 /gene="fs(1)Yb" /note="Tudor domain superfamily; Region: Tudor_SF; cl02573" /db_xref="CDD:470623" misc_feature order(2944..2946,2953..2955,2959..2961,3022..3024, 3031..3033,3040..3042) /gene="fs(1)Yb" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:410449" ORIGIN 1 cgacttgttc ttttcaagtg tttatccatt aaaaacccat taaacttggg atttgtttat 61 ttcttgtgtt tgggcttcta ctttctcgtg gtgattccta aataaaagtg tttaagcgca 121 ttggaagatt ataaaatgaa gccgtctgaa gatctcaaag ttcccagttt tacgggggag 181 tacaccggat ccactttcac atacgccagt ccaaaatccg gagccgattc cctcgacttt 241 ttggcgcaaa caatcagagg aagagacccc aacacatgca gaattatttt gatatgtcag 301 cagaatttcg aagccgagca tctgaaatcg gagctcgccg gacgcgatgt caacacaatc 361 ctcctcgcag cggatgaccc gatggccaac caagtgctgc tcctctggtc aaaagggtac 421 attcaccaag ccctgattct ttgcgattcc atgctaaata ttcttgaggg actcgaggtg 481 aatttcgtga tccatacatc gttgccgccg ttgaaaaagt ttgaacaacg cttggagagg 541 ctgagaaagt cggaaattaa agccgagtcg ttggttataa cagctcacta tgggggaaat 601 gggaattccg ataataaaat agtaaaagca gatacagaaa tgttacaatc cccgaagaac 661 ggagtaaatg agagccccaa aatgctggat aaaccacaac ctctagaaga tgtgcccata 721 aaagacataa aaccagtggt caaggtggat cctatatatt taagaaacct cagtgaaaag 781 gaatttgaac gttttaaatc ttcaaaagat gatgaagcaa aatctgtttt taatccaact 841 ggagcattct ctgctattca agacttcaat actcctgtgg tcctcgagcc aattccaaaa 901 tccttggatg ataaagaggc tcaatcatct ttaaaggtag aagacattat gaaagagttc 961 ctaaaactaa ctattggatc taagactcca gaatcccagt gcgattataa agaggatccg 1021 agttctttta gagtagaagg aaatgtggaa gaatttggtc cttccgagga ggtatcttct 1081 tcggaagcct cggaacttga gctgcagagc ttgttgatgt caaggagact tcagagtgct 1141 ctcccagaat tggagtcttc tcctgagcct ccgtatccgc ctcaaatagt taccattgca 1201 gaaccccttt ccctggatct tcttgatgat accgcttctc tcgactcctt ccaaaccgtg 1261 gaggactctc cttctccctc catttctccg gattctctca ctgccggtgg caccatcgtc 1321 tataattatg gaatcctgtc ctggagtcgc cacctggttg ttccgtgcta cgaccttagt 1381 ggagtgcctg gcataagcca taaaatccgg gttgccatgc atcaaatggg cgtggccagg 1441 agccgagccc gtgctgtcca gagattcgcc tggccccacg tcgccgctgg gagatcgctg 1501 atcgtcgtgg gcaacacgca gatcggcaag acctggtgct atctgcctat cctatgccag 1561 cggagccacg aggagctgca gctgcgtcgt ccctctgatg accatggacc caccagcatc 1621 gtagtgtgct ccaatcaatc gcagggccag cagattggcc gctccatgga cacgctgctc 1681 cgttcgttgg gcaatgattc ctctctggag acgatggtca gtcactggga catgggcaat 1741 gtgacggaca tcctgggcag gctcagccag cccgtgggca tcctgctgac cagcgtggac 1801 ctgctgctcc agctgctgac gcatcactcc aagcggtcgc ccattttcga tgcggctgcc 1861 gtgaagttta tagctctgga taacctgcac gacatggtgc gtcttctgcc ggatgtcacg 1921 atgcggctgc tcaagcggct gccggaaata tttgattttt ctcctagtaa atgccagctt 1981 tttgtctccg gaagaaattg gcacccggat ctgatgaggc agcgcctcct gccgctgatg 2041 cccgaggttc tcctcctctt cgatgacgct ttggaggctt ctgtctatgg cggcgtacag 2101 ctggacactc ggattgtgcc ggaggagcag aagatcgaag agctggtggc tctaatcagg 2161 cagaaaaatc tctcagagga tcgcaccatt gtctgctgtt ccagcgccgc cgaggttctc 2221 catttgcgcc accagctgga cgggatgggc atcgccgtgc agacctgcat ctcggagtcg 2281 tgcttcaacc aggtcagcca atggcgacgc caatctccgg ccagtcttct cctggtggcg 2341 gatgatgtgg tgcccaagct gcgatgcgga tttatagccc tgctcatcca cttcaactgg 2401 gccaccagct ggatgcgttt caagcatcgc ttcagcctct tccacgagaa ctacaaatca 2461 atgccggcga agagatgcag taaatccgtg atcttctgcc aggctaccga tgtggacagc 2521 atctggctga tggctgactt tctgctgaag catggactac ccaggcccag ccatttgctg 2581 gacattctgg cccagcgtcg cctggcggag cctctgcatc cgatgaggct gcgtctctgc 2641 cgccaggtga ccgctttcgg ggattgcctg aggaacagct gccggtacag gcatctcgtg 2701 tggcagcagg aggtcgtgcc gccgtatcat tatcccacca agggcgagat tcgattcacg 2761 gtcctaactt gcaacagtcc cgccagcctg tcggtccgac tgaacgacca atatcccacg 2821 gtggcctact tcctcaggat tccgatgacc aatctgggcc agcaggtgca acggcactac 2881 gaactggagg agaaccgacg caggcacccc aatcctgcgc ccggcgagcg ggtggtggtc 2941 aagaacatga accgctacga gcgagtggtc atcctggaag tgaacaaaga aggtaatggt 3001 aatggtaagg tgtcggtgca actgatggac acgggcaccg acatactcat ctacaatgcc 3061 agccaagtgt acatctgcga gaagatcttc aaggatcaac cgcgggaggc aatggaggtg 3121 aggatcactg gcctcgagcc ggaaagcctg gatcgcatct ggcccgagga tgtgcgcaat 3181 gtggtgcgca atcagttctt cagcaggacg cagaatagac ggtgtcgcca gttctccgcc 3241 gttgtgcagg ccaccatcca cgagaccatc ttcgttcggg atgtgcacga tagcgagggc 3301 aacgacctgc gcaccttcgt ttcgagtcgt ttccgcgttc accaggagga gcactgcctg 3361 gacaagctta ttagaatggt ccagggctcc aaacccagac cagctccaaa aagccactaa 3421 ttttacattc actcatagaa atttttacct aaatactaga aaagtcgccc taaaactagg 3481 aaaaattttc ttattataca ggtgcctagc ccttaatata cgaaaaatcg ccatataaaa 3541 tattttttag ggttagtttt ccctattatt tagagcgaat ttttatgagt cgactccaaa 3601 agtaacttct tctttttagg gcgcaattac ctttaaaaat agaaaaatcg tcgtaaatgt 3661 atgactaatt cacccttatt tttagggcaa ctttacatta ttttgttgcc taatcgccat 3721 tgacccctgt tttagggcga ttttaccgga aaacttctat gagtgttgaa tcctgcttat 3781 ttgaacattt tttatcatct aaaaaattta cttatgtttt cttgtacaat gggcttacat 3841 ttcatttcga aaaaaacgtt ttcctttctt ttttaaattt ataaagcaat tgcatttgat 3901 tat