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LOCUS XM_017153034 2199 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017153034 VERSION XM_017153034.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153034.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2199 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2199 /gene="Cda4" /note="chitin deacetylase Cda4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108065126" CDS 123..1580 /gene="Cda4" /codon_start=1 /product="chitin deacetylase 1 isoform X2" /protein_id="XP_017008523.2" /db_xref="GeneID:108065126" /translation="MLRLSLVAVLLAVAGVNGQGKEKEEFQCPSHIANGNYADPATCR RFYQCVDGFPYLNRCPSGLFFDDLQKYCTFKDEAKCGPLPTTPAPATEAPADTAQRCN TEECALPYCFCSKDGTQIPGDLEAEKIPQIIMLTFDGAVNLNNYQHYQKIFDGKRKNP NGCLIRGTFFMSHEYSNYQQIQHLGYYGHEIGTESISQQQGLQDKGYEEWVGEMIGMR EILRHFANVSVNDVVGMRAPFLKPGRNTQYKVLEDFGYIYDSSITVPPVAVPVWPYTL DYKISHECKSGTCPSRTFPGVWEVPLNTHYVEGYEGGHCPYLDQCVLHNLDEEEVLQW LQEDFSRYYEQNKAPYMMPFHTNWFQTKPLENGLHKFLDWALELPDVYILTVTQMLQY MTDPKELRDISQIEAWKCDKSVAVAPKPCNIWQTCALPFKIPEQNVTDTRYMETCREC PNVYPWLGDAGGTGIAGRDNYIFNGGTDSSSESTN" misc_feature 219..362 /gene="Cda4" /note="Chitin binding Peritrophin-A domain; Region: CBM_14; pfam01607" /db_xref="CDD:426342" misc_feature 510..1310 /gene="Cda4" /note="Putative catalytic domain of chitin deacetylase-like proteins with additional chitin-binding peritrophin-A domain (ChBD) and/or a low-density lipoprotein receptor class A domain (LDLa); Region: CE4_CDA_like_1; cd10974" /db_xref="CDD:200596" misc_feature order(528..539,702..719,828..830,834..836,906..908, 1179..1181,1185..1187) /gene="Cda4" /note="NodB motif; other site" /db_xref="CDD:200596" misc_feature order(534..539,702..704,714..716,834..842,1185..1187) /gene="Cda4" /note="putative active site [active]" /db_xref="CDD:200596" polyA_site 2199 /gene="Cda4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acttgcgcgt tgcggacgtc tcgcccgccc cgatctccct atctctcgca cacactctcc 61 tatatctcgt tccggaatcg ggatatacat atagctgatc cgtacacgta gccagaacca 121 agatgttgcg gctttctctg gtggccgtgc tgctggctgt tgctggtgtc aatggccagg 181 gaaaggagaa ggaggagttc cagtgtccct cacacattgc caatggcaac tacgctgatc 241 cggcgacctg tcgtcgtttt taccagtgcg tcgatggatt tccgtatttg aaccgctgtc 301 catccggact tttcttcgat gatctgcaga agtactgcac attcaaggat gaggccaagt 361 gcggtcctct accaacaaca cccgcccctg ccaccgaggc cccggctgac accgcccagc 421 ggtgcaacac ggaggagtgc gccctgccct actgcttctg ctccaaggac ggcacccaga 481 ttcccggcga cctggaggcc gaaaagatcc cccaaatcat tatgctcacc ttcgatgggg 541 cggtgaatct gaataactac cagcattacc agaagatttt cgacggcaag cgcaagaatc 601 ccaacggctg tctgattcgg ggcaccttct tcatgtccca cgagtacagc aactaccagc 661 agatccagca cctgggatac tatggacacg aaatcggaac ggagagcatc tcgcagcagc 721 aggggctgca ggacaagggc tacgaggagt gggtgggcga gatgattggc atgcgtgaaa 781 tcctgcgaca cttcgccaat gtgtccgtca acgatgtggt cggcatgcga gcccccttcc 841 tcaagcctgg ccgcaacacc caatacaagg tgctggagga cttcgggtac atctatgaca 901 gttcgatcac cgttccaccg gttgccgtac cagtgtggcc gtacaccctt gattacaaga 961 tctcgcacga gtgcaagagc ggcacatgtc cgtcgcgcac cttcccaggc gtttgggagg 1021 tgccccttaa cacccattac gtggagggat acgagggtgg tcactgtccc tacctggacc 1081 agtgcgtcct gcacaacctc gacgaggagg aggtgctaca gtggctgcag gaggacttct 1141 cgcgctacta cgaacagaac aaggcgccct acatgatgcc cttccacacc aactggttcc 1201 agacaaagcc actggagaac ggactgcaca agttcctcga ctgggccctc gaactacctg 1261 acgtctacat cctaaccgtc acccagatgc tgcagtacat gaccgatccc aaggagctgc 1321 gcgacattag ccaaatcgag gcgtggaaat gcgacaagag cgtagcggtg gccccgaagc 1381 cctgcaacat ctggcaaacg tgtgcgctgc ccttcaagat ccccgaacag aacgtgacgg 1441 atacgcgcta tatggagacc tgccgggaat gccccaatgt gtatccctgg ctgggcgacg 1501 ccggcggtac gggaatcgct ggtcgggata actatatctt caacggaggc acagatagtt 1561 ccagcgaatc taccaattag agaagatcct accttttcac tccttttttt ccttttcatc 1621 tctcttactc gtaaagtaaa agagtgtatt atattcgttg aaaagtaaaa aattaaaatt 1681 atgaagcctt tctattttta aacaggctca ctagccttgt ccgtctgtcc gtttgaacga 1741 tgagatctcg ggaactataa atgccaggat attaaatatg atgattgtcg ggcttacaac 1801 cttttagttt ccttttacca agccaataga attacactta acgtcattga aattgattaa 1861 cgagtataag atagtcgaga cactcgacta tagtcttctt tcatgttttt tttttttgtg 1921 tcatgtctct tattgttgtt gaatttgttt ttctctatat tgaactctca ctaatttctc 1981 acacatgtgc cagtcatcgt gatgcaataa tgagctgctg cctttttata aataactctt 2041 agtttgttct tcgtttttcc tgtagtgctg tgtgcttcac agtgtacttc tctagtagtt 2101 cttaagcgaa atcgtgtcaa attgttctta gtttgtaagc gacaaaatgt ttgtaaaaaa 2161 tcacattttt tgtatgaata aaatgaatat ttttctaaa