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LOCUS XM_017151585 4770 bp mRNA linear INV 09-DEC-2024 (LOC108064176), mRNA. ACCESSION XM_017151585 VERSION XM_017151585.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151585.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4770 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4770 /gene="LOC108064176" /note="uncharacterized LOC108064176; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108064176" CDS 107..3070 /gene="LOC108064176" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_017007074.2" /db_xref="GeneID:108064176" /translation="MADSRKDVNRGRRHGGRKGPPGGGFVANGQARNSNSNSNAAKAA GKTSSKPSSKPSKHKPSGEEDKLNGQDEKALRQLVSDFLQSREPEQQLRGLSKAQRSH VHRLAQSRGLKTASKGPEEDRVLTISRPQSDALQHYLLDNARLHTSPALLRIFDQIYG PVESRLDRMPPGFWRLNRQPEEERRPSNFGLVGQRLIPPPPSNRNRNIEQDRRSLPIF KQRENILGNLQREQVLIIKGATGSGKSTQLPQYILEWAAQERAAVRIVVSQPRRIAAI SVSERISKERGEAAGTTVGYQIRMNSKCSSQTVLTLTTSGCLLRALAMDGESFFRNTT HLIIDEVHERDLDTDFLLLATKLELQKNPHLRLVLMSATMDLQALSDYFGQASVMDVE GRGFGVRIYHLEDILSETGYMTPRMEEYLGELTGDEQPGELLAAYYNGRTIIDPDIDN DLIISLLELLLRTGDSGAVIVYLPGYNDMTELMDRLYTALSRYPIKILLLHSQVDNNE QRKVFRVYQGVRLKIILSTNIGQTSITIPDLLYVIDAGRAKMMTYDPITDASQLCSTW ISQADAQQRAGRAGRLRYGICYRLFDSDRLARMPLYTIPEIMRRTLDEICLLTKVAAP EARIDKFLALALDPPQPEAVLQAIAKLQLLGVLREADETITPLGRIIAELPLSVQLGK CLVYSVYYRCLGSMTIIAAYHSVRDPFVLNTKSGGGGGGGGQQNARLQFAGDGMSDSL AALQLYAEFVNLKRIHIADFCERNLLCRHAMEMFVAAVSTLRDTVHRIFRCNQASARL ASAFDQDTNMIRLALTAGLYPKLAYMDRENKHQLVAEGDPFVQVSRTSCLLGRKKQKT LASEWILFVEKTRNADQRSSLEHTSLVSGLQVALVGGKQFRLEPVGAAEVLICLDSWV RLKCPSDFGGKLKTLRHLMDREVAEMVETRRLSSAGKWIGPETVCRLMQADVQSVCLA EGRGLPDEGHCDNDC" misc_feature 323..493 /gene="LOC108064176" /note="R3H domain; Region: R3H; pfam01424" /db_xref="CDD:460206" misc_feature 746..>2233 /gene="LOC108064176" /note="HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]; Region: HrpA; COG1643" /db_xref="CDD:441249" misc_feature 2531..2788 /gene="LOC108064176" /note="Oligonucleotide/oligosaccharide-binding (OB)-fold; Region: OB_NTP_bind; pfam07717" /db_xref="CDD:400182" polyA_site 4770 /gene="LOC108064176" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acaagctcaa ccagctcaat aaaattaaaa catttcattt tcattttcag tgaagacggt 61 tgtgtttaat tcgaataaat attactagaa atatctaaaa tagccaatgg cagatagtag 121 gaaagacgta aaccgcgggc gtcgccacgg cgggaggaag gggccgccgg gcggtgggtt 181 tgtggccaat ggccaggcga ggaactccaa ttcgaattcc aatgccgcaa aggccgcagg 241 taagacctcc tccaagccct cctccaaacc ctccaaacac aagccttccg gcgaggagga 301 caagctcaat gggcaggacg agaaggcgct gcgccagctg gtcagcgact tcctgcagag 361 ccgcgagccg gagcagcagc tccgcgggct gagcaaggcg cagcgcagcc acgtccaccg 421 gctggcccag agccgcggcc tcaagacagc gagcaagggg cccgaggagg accgcgtcct 481 gaccatctcg cgcccgcagt cggacgccct gcagcactac ctgctggaca acgcccggct 541 gcacacgagt cccgcgctct tgaggatctt cgaccagatc tacgggccgg tggagagccg 601 cctggacagg atgccgccgg gcttctggcg cctcaatcgc cagccggagg aggagcgccg 661 cccgtcgaac ttcggcctgg tcggccagcg gttgatcccg ccgccgccaa gcaaccgcaa 721 ccggaacatt gagcaggacc gacgcagtct gcccatcttt aagcagcgag agaacatcct 781 tgggaatctc cagcgcgagc aggtcttgat catcaaagga gccaccgggt cgggcaagtc 841 cacccagctg ccgcagtaca tcctcgaatg ggccgcccag gaacgggctg cggtcaggat 901 cgtggtgagt cagccgcgac gcatagcagc gatcagcgtg tcggagcgca tttccaagga 961 gcgcggcgag gcggcgggca ccacggtggg ctatcagatc cgcatgaaca gcaaatgcag 1021 cagccaaacg gtcctcacgc tgaccaccag cggctgtctt ctgcgtgctc tagccatgga 1081 cggcgagtcg ttcttcagga acaccaccca cctgatcata gacgaggtgc acgagcggga 1141 cttagacacg gacttcttgc tgttggccac caaattagag ctgcagaaga acccccatct 1201 gcgcctggtg ctcatgtcgg ccaccatgga cctgcaggcc ttgtccgact actttggcca 1261 ggccagcgtg atggacgtgg aggggcgcgg cttcggggtg aggatctatc acctagagga 1321 cattctaagc gagaccggct acatgacgcc gcgcatggag gagtatttgg gcgagctgac 1381 gggcgacgaa cagccgggcg aactgctggc agcctactac aacggacgca ccattataga 1441 cccggatata gacaatgatc taatcatttc tttgctggag ctgctgctgc gcacaggaga 1501 cagtggagcg gtgattgtct acctaccggg ctataacgac atgaccgagc taatggaccg 1561 attgtacacc gctctgtcgc gttacccgat caagatcctg ctgctgcaca gccaggtgga 1621 caacaacgag cagcggaagg tcttccgcgt ctatcagggt gttcgtctaa agattatctt 1681 gagtaccaac atagggcaaa cttcaataac cattcccgat ttgctgtatg tgatcgacgc 1741 gggtcgcgcc aagatgatga cctatgaccc cattacggat gcctcgcagc tgtgcagcac 1801 ctggatctcg caggcggatg cccagcagcg ggcgggacga gcgggacgcc tgcgttacgg 1861 catctgctat cgactgttcg acagcgaccg gctggccaga atgccgctgt acacgattcc 1921 cgagatcatg cgtcgcaccc tcgacgagat atgcctgctg accaaggtgg ccgctccgga 1981 ggcgaggata gacaagtttc tggccctcgc gctggatccg ccgcagccgg aggccgtgct 2041 gcaggccatt gccaagctgc agctgctggg cgtgctgcgg gaggccgacg agacgattac 2101 gccgctggga cggatcattg ccgagctgcc gctgagcgtg cagctgggca agtgcctggt 2161 ctactcggtt tactaccgct gcctgggcag catgaccatc atagcggcct accactcggt 2221 gcgcgatccc ttcgtgctga acacgaagtc gggcggcggc ggcggcggcg gaggtcagca 2281 gaatgcacgg ctgcagtttg ccggcgacgg catgagcgat tcgctggccg ccctgcagct 2341 ctacgcggag tttgtcaatc tgaagcgcat ccatatcgcc gatttctgcg agcgcaatct 2401 gttgtgccgc cacgccatgg agatgttcgt cgcggcggtg tccacgctgc gcgacaccgt 2461 gcaccgcatc ttccgctgca accaggccag cgctcgcctg gcctcggcct tcgaccagga 2521 cacgaacatg atccgtctgg ccctgacggc cggcctgtat cccaagctgg cgtacatgga 2581 tcgcgagaat aagcaccagc tggtggccga gggcgatccc ttcgtccagg tatcgcgcac 2641 ctcctgcctg ctgggcagga aaaaacagaa gacgctggcc agcgagtgga tactgttcgt 2701 ggagaagacc cgcaatgccg accagaggtc ctcgctggag cacacgagcc tggtgagtgg 2761 cctgcaggtg gccctggtcg gcggcaagca gttccgcctc gaaccggttg gtgcggcgga 2821 agtgctgatc tgcctggatt cgtgggtgcg cctcaagtgt cccagtgatt ttgggggcaa 2881 actcaaaact ctgcggcatc taatggatcg cgaggtggcc gagatggtgg agacccggcg 2941 gctcagctcc gccggcaagt ggattggccc ggagaccgtg tgccgactga tgcaggcgga 3001 cgttcagtcc gtgtgcctgg ccgagggcag ggggctgccc gacgagggcc actgtgataa 3061 cgattgttag aacttaagct agggaatcgg ccaaaaaaac acgaaataac acagtattcg 3121 cgaggtgatg gaccggtaga aaggtagacc ggtacccccg tagaaataaa tccacgatct 3181 aacgataaac ccatatttgt acagtgcgtt tcaaaagcct aagacagcct gtcgtacctg 3241 attagggcag ctaaattcac aactgagagg ctaacgaatt ttactctttt tttttttaat 3301 caatttttgt tataaaattt ttataagcaa attttagcct gacttttaga atgtacagag 3361 catttagtag gcaatcaaac ttgaattgta cttattaatg gttaagtgac ttacaaaata 3421 cttgaactag attcctttat tgttgtgata aacctaagaa tattttcgag tatttaacga 3481 gatctccgtt ttttattcta atcattattt tgaatgcttt gctcgatttg gacaaaagtt 3541 taatcggctt ccttaggtaa tatatgcatc gaatttaata tagaatataa gactatatct 3601 ctgcacttgt ctcatgcaca tgcacatgtc tctcgacgcg tatctattga tgcaactatt 3661 ttaagctctg aaacgcactg taggcacatt ttagcaattg gaaacacaca gggaattacg 3721 aatgtaaacc aaaagtatga ttttcgagag tgcaactgcg ggcactccct aattgccggg 3781 tgaaaatatg tgtgccacga gatgccgcga gatgccaggg agatcgcgac tcagtgtcag 3841 cgagcccgga tggtgggcgt ggcagttccc tgcggtgcat tgggccatgg cagtcatgga 3901 gctgccttcc acctgcctgc cacctgcctc ccactgccca ttgagccgca aacaagagcg 3961 ggcaaatgga aaatggagaa aaaaacagag ttaattgcac agacgacgca gtcaataaac 4021 ctgaagtcga gcttgtcgct gctgcagcaa caatggccac aaagacaccg gagcagcagc 4081 agcagcaaca gcagaaaaga cagcagcagc ttacttacaa agaaagtgaa attaatttgt 4141 tatttttcgg tcgattgtgg ctctttgagc gatgcctttg atgcctttga aaagcggcag 4201 agagagcatg gccaatctcc acggtcgacc ctacgaattc gaagtctttt tcgctcccgt 4261 agaatattgt atgaatgtgt attttaaatt gaatgtttag tgtatgtaga gaagaccatt 4321 cgaaatgtat tccattaatt aattataata ttaatgtaga tatatatgta tttttgaata 4381 tctcaagcgt tgaaaatgtt ctagctaaat gcatatctct ttagatcatt tctttttaaa 4441 atatttaaat tacatttcca attacaacat tttttcacgt ttttcttttg aaaaatccgt 4501 ccttgcctca aaaagacttt tataatttta atacaaatga tattattctt ccattgggca 4561 ttcgatgtgc ttttagtttt ggaaaaccac ttttttttac tctgaaaaat actagttaga 4621 gatttgtatt tttatgcaga atctgtttat actacaaatt tttcaaatgc atatttaagg 4681 ctaagaaaaa caagataatt aattgtaaaa tattttggat gtacctacaa ctacagattt 4741 taagaataaa attgaactag acgtttgaag