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LOCUS XM_017151460 6068 bp mRNA linear INV 09-DEC-2024 regulator (baz), transcript variant X4, mRNA. ACCESSION XM_017151460 VERSION XM_017151460.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151460.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6068 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6068 /gene="baz" /note="par-3 family cell polarity regulator; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108064086" CDS 225..4766 /gene="baz" /codon_start=1 /product="partitioning defective 3 homolog isoform X3" /protein_id="XP_017006949.2" /db_xref="GeneID:108064086" /translation="MFDVPPKCPALANKLGGLFGWRHTYKVAAKHEGIPHGQLHKSYS LTLPKRPPSPSAYSCVKPDSWVTVTHLQTQSGILDPDDCVRDVADDREQILAHFEDPG PDPGVPQGGGDGASGSSSVGTGSPDIFRDPTNTEAPTCPRDLSTPHIEVTSTTSGPMA GLGVGLMVRRSSDPNLLASLKAEGSNKRWSAAAPHYAGGDSPERLLLDKAGGQLSPQW EEDDDPGQQLKEQLLQQQQQPHGAGSANNHQPFARSGRLSMQFLGDGNGYKWMEAAEK LQSQPTTAQQMHHHHPSGSSYSSKSLPRESKRKEPLGQAYESIREKDGEMLLIINEYG SPLGLTALPDKEHGGGLLVQHVEPGSRAERGRLRRDDRILEINGIKLIGLTESQVQEQ LRRALESSELRVRVLRGNRSRNSKVAEMVEVATVSPTRKPHAAPVGTSLQVANTRKLG RKIEILLKKGPNGLGFSVTTRDNPAGGHCPIYIKNILPRGAAIEDGRLKPGDRLLEVD GTPMTGKTQTDVVAILRGMPAGATVRIVVSRQQELAEQAGQPAAEKSVTAVAAPAPAA IPIPVQKSSSARSLFTQQSQLNESQHFIDAGSESAASNDSLPPSSNNWHSREELTLHI PVHDTEKAGLGVSVKGKTCSNLNASGSSASSGSNGGGGAGGLMKLDGDLGIFVKNVIH GGAASRDGRLRMNDQLLSVNGVSLRGQNNAEAMETLRRAMVNTPGKHPGTITLLVGRK ILRSASSSDILDHSSSHSHSNSSSGGSNSNGSGHNNNSSSNASDNSGATVIYLSPEKR EQRCNGGATGGSAGNEMNRWSNPVLDRLTGGICSSNSAQPSSQQQQPTHPSQQQQQTQ QQQQQQRRLPAPPVCSSAALRNESYYMATNDNWSPAQLHLLTGHGNTALLIEDDAEPM SPTLPARPHDGQHCNASSANPSQNLNAAGGSHPVVVVPGTPSTSSNFDATYSSQLSLE TNSGVEHFSRDALGRRSISEKHHAALDARETGTYQRNKKLREERERERRIQLTKSAVY GGSIESLTARIASANAQFSGYKHAKTASSIEQRETQQQMAAAAESEARDQLGDLGPSL GMKKSSSLESLQTMVQELQMSDEPRGHQALRAPRGRGREDSLRAAVVSEPDASKPRKT WLLEDGDHEGGFAAQRNGPFQSSLNDGKHGSKSSRAKKPSILRGIGHMFRFGKNRKDG VVPVDNYAVTISPPTSVVSTATSPQLQQQQQLQLQQQQQQLQQQQIPTAALAALERNG KPPAYQPPPPLPAPNGVGGSNGIHQNDIFNHRYQHYANYEDLHQQHQQHQISGDESPT SISETLSESTLECMRQQVIRQRIKVEAESRRHQHYHSQRSARSQDVSMHSTSSGSQPG SLAQPQSQSNGSGVRPMSSYYEYETVQQQRVGSIKHSHSSSATSSSSSPINVPHWKAA AMNGYSPASLNSSARSRGPFVTQVTIREQSHLLQQHHQQQQQQQQLQQQPTYQTVQKM SGASQYGTAAGSQPHASKV" misc_feature <408..524 /gene="baz" /note="N-terminal of Par3 and HAL proteins; Region: Par3_HAL_N_term; pfam12053" /db_xref="CDD:463446" misc_feature 1191..1451 /gene="baz" /note="PDZ domain 1 and PDZ domain 3 of Drosophila bazooka (DmPar3), and related domains; Region: PDZ1_PDZ3_bazooka-like; cd06665" /db_xref="CDD:467154" misc_feature order(1230..1250,1281..1283,1290..1292,1380..1382, 1392..1394,1401..1406) /gene="baz" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467154" misc_feature 1566..1844 /gene="baz" /note="PDZ domain 2 of partitioning defective 3 (Par3), and related domains; Region: PDZ2_Par3-like; cd23058" /db_xref="CDD:467271" misc_feature order(1611..1631,1674..1676,1683..1685,1773..1775, 1785..1787,1794..1799) /gene="baz" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467271" misc_feature 2073..2444 /gene="baz" /note="PDZ domain 3 of partitioning defective 3 (Par3), and related domains; Region: PDZ3_Par3-like; cd23059" /db_xref="CDD:467272" misc_feature order(2121..2141,2256..2258,2265..2267,2355..2357, 2367..2369,2376..2381) /gene="baz" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467272" polyA_site 6068 /gene="baz" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gaaatgcgtc gtcgtcggac gtcgccgtcg ctgggccgtc ggtaccacca caattgttta 61 acgcaattgt tttaacgcgg tgaaatgttc ctcaaattac aattaaacgg cagtgacaaa 121 gaaaagccaa cgaaaagcga acagtaaaac gattaaaaag tgaagatata aaaataaata 181 tataaaacca ataagcaaat accaaagatc ggatttggat cgacatgttc gacgtaccgc 241 caaaatgtcc ggcgctggcc aacaagttgg gcggtctctt tggatggcga cacacctaca 301 aggtggccgc caagcacgag gggattcccc acgggcagct ccacaagtcc tactccctca 361 cgctgcccaa gcgaccgcca tcgccctcgg cctactcgtg tgtgaagccc gattcctggg 421 tgaccgtgac ccatctgcag acacagtcgg gcatcctcga tccggatgac tgtgtgcgcg 481 acgtggccga cgaccgggag cagatactgg cccacttcga ggacccggga ccggatccgg 541 gcgtcccgca gggcggcggc gacggtgcgt cgggcagttc gtccgtgggc accggctcgc 601 cggacatttt ccgcgatccg accaacacgg aggcgcccac ctgtccgcgc gatctgtcca 661 cgccgcacat cgaggtgacc agcactacgt cgggtccgat ggccggacta ggagtgggcc 721 tgatggtccg tcgcagcagt gatcccaatc tgctggcctc cctgaaggcg gagggcagca 781 acaagcgctg gtcggcggcg gctccccact acgctggcgg agattccccc gagcgcctgc 841 tcctggacaa ggccggtggc cagttgtcgc cccagtggga ggaggacgac gatcccggcc 901 agcagctaaa ggagcagctg ctccagcagc agcagcagcc acatggagca ggatcagcca 961 acaaccacca gccattcgct cgatccggcc gcctgtccat gcagtttctg ggcgacggca 1021 atggctacaa gtggatggag gcggccgaga agctgcagag ccagccgaca acagcccagc 1081 agatgcatca tcatcatccc tctggcagct cctattccag caaatcgctg ccccgggaga 1141 gcaagcgcaa ggagccgctg ggccaggcat acgaatccat acgcgagaag gacggcgaga 1201 tgctgctgat catcaacgag tacggcagtc cgctgggact gacggctctg cccgacaagg 1261 agcacggcgg cggactgctg gtgcagcacg tggagccggg cagtcgggcg gagaggggac 1321 ggctgcgtcg cgatgatcgc atcctcgaga tcaacggcat caagctgatc ggactgactg 1381 agtcgcaggt tcaggagcag ctgcgtcggg ccttggagag ctcggagctg agggttcgag 1441 tgctgcgcgg gaatcggagc agaaactcca aggtggccga gatggtggag gtggccacgg 1501 tgtcgcccac ccggaagcca catgccgctc cagtcggcac ctccctccag gtggccaaca 1561 cacgcaagct gggcagaaag attgagatac tgctgaagaa gggacccaat ggactgggct 1621 tctcggtgac gacgcgcgac aatcccgccg gcggacattg ccccatctac atcaagaaca 1681 tcctgccgcg cggagcagcc atcgaggatg gtcgcctgaa gcctggcgat cgcctgctgg 1741 aagtggacgg cactccgatg acggggaaga cgcaaacgga tgtggtggcc attttgaggg 1801 gaatgccagc gggggccact gtgaggattg tggtctcgcg gcagcaggag ttggccgagc 1861 aggctggcca gccggcggcg gagaagagtg tgactgcagt tgctgctccc gctccggctg 1921 ccattccaat tcccgtccag aaatccagca gtgcacgatc tctgtttacc cagcaatcgc 1981 agctcaacga atctcagcac tttatcgatg cgggcagcga gtcggcggcc tcgaatgaca 2041 gcctgccccc gagcagcaac aactggcatt cgcgcgagga gctgaccctt cacattcccg 2101 ttcacgacac cgaaaaggcc ggactggggg tcagtgtgaa gggcaagacg tgctcgaatc 2161 tgaatgcctc cggatcgagt gcctccagcg gcagcaacgg aggaggagga gcaggaggac 2221 tgatgaagct cgacggcgac ctggggatat tcgtgaagaa cgtcatccat ggtggagcgg 2281 cgtcgcgcga cggtcgcctg cggatgaacg atcagctgct gagcgtgaat ggagtatcgc 2341 taaggggtca aaataacgcc gaggccatgg agacactgcg tcgagcgatg gtcaatacgc 2401 ccggcaagca tccgggcacc ataaccctgc tcgtgggccg caagatcctg cgatcggcca 2461 gctccagcga catcctggac cacagtagca gccatagtca cagcaatagc agcagcggcg 2521 ggagcaattc gaatggcagc ggccataaca acaatagcag ctcgaatgcc agcgacaatt 2581 ccggagccac ggtcatctac ttgagtcccg agaagcggga gcagcgttgc aatggcggcg 2641 ccactggagg cagtgccggc aatgagatga acagatggag caaccccgtt ttggatcgcc 2701 taaccggtgg catttgctcg tcgaactcag cgcagccatc ctcccagcag cagcagccga 2761 cacatccctc ccagcagcaa cagcagacgc agcagcagca gcaacagcag cgccgcctgc 2821 ccgcaccgcc cgtttgcagc agtgcagcgt tgaggaacga gagctactac atggccacca 2881 acgacaactg gtcgccggcg cagctgcacc tgctcactgg ccacggcaac acggcgctgc 2941 tcatcgagga cgacgctgag cccatgtcgc caaccctgcc ggcgcgtcct cacgatgggc 3001 agcactgcaa cgcgagcagc gccaatccat cgcagaattt gaacgcagcc ggcggaagcc 3061 atccggtggt cgtggtaccg ggcacaccgt cgacgtccag caactttgat gccacctact 3121 cgtcgcaact gagcctggag accaactccg gcgtggagca cttctcgcgc gatgccctcg 3181 gcaggcgcag catctcggag aagcatcatg cggcgctgga tgcccgcgaa acgggcacct 3241 atcagcggaa caagaagttg cgcgaggagc gggagcgcga gcgacgcatc cagctgacca 3301 agtcggctgt ctacggggga tccattgagt cgctcaccgc ccgcatagcc agtgcgaatg 3361 cccagttctc gggctacaag cacgcgaaga cggcttcgag catcgagcag cgggagacgc 3421 agcagcaaat ggccgcggcc gccgagtcgg aggccaggga tcagctgggc gatctcggcc 3481 cgtcgctggg catgaagaag tcctcgtcgc tggagtcgct gcagacgatg gtgcaggagc 3541 tgcagatgtc cgatgagccg cgtggccatc aggcgctgcg ggcgccgcgt gggcgtggca 3601 gggaggatag tctgcgagcg gcggtggtca gcgaaccaga tgcgagcaag ccccgcaaga 3661 cctggcttct ggaggacggc gatcacgagg gcggcttcgc tgcgcagcgg aatggaccct 3721 ttcagagctc cctgaacgat ggcaagcatg gcagcaagtc gtcgcgggcc aagaagccga 3781 gcattctgcg cggcatcggg cacatgttcc gcttcggcaa gaaccgcaag gacggcgtgg 3841 tgccggtgga caattatgcg gtgaccatat cgccgcccac atcggtggtc tccaccgcca 3901 cgtcgccgca gttgcagcag cagcagcagt tgcagttgca acagcagcag cagcagctgc 3961 agcagcaaca gatacccacc gctgcattgg ccgcgctgga gaggaatggc aagccgccgg 4021 cgtatcaacc gccgccaccg ctgcctgctc cgaatggcgt tggtggtagc aatggcatcc 4081 atcagaacga catcttcaac catcgctatc agcactatgc caactacgag gatctgcacc 4141 agcagcatca gcagcaccag attagtggag acgagtcccc cacatccatt tcggaaacgc 4201 tttcggagtc gacgctcgag tgcatgcgac agcaggtcat ccggcagcgc atcaaggtcg 4261 aggcggaaag tcgccgccat cagcattacc attcgcagcg cagtgcgcgc tcgcaggatg 4321 tgagcatgca ctcgacgagc tccggctccc agccgggatc cttggcccag ccgcagtcgc 4381 aatccaatgg cagcggagtc cgtcccatga gcagctacta cgagtacgag acggtgcagc 4441 agcagagggt gggcagcatc aagcacagcc acagcagcag cgccacctcg tcctcctcgt 4501 cgcccatcaa tgtgccgcac tggaaggcgg cggccatgaa cggctactcg ccggccagcc 4561 tgaacagcag cgctcggagt cgcggtccgt ttgtgaccca ggtgaccata cgtgagcaga 4621 gccacctgct gcagcagcat caccagcagc agcaacagca gcagcagctt cagcagcagc 4681 ccacctacca gaccgttcag aagatgtccg gagcatcgca atatggcact gccgccggct 4741 cccagccgca cgcctccaag gtgtgactat aggtgttggc gcaggcgcgc gccacccgcg 4801 atgtgctggc cgagaaccgg gtcattctca gcgaggccaa cgaggaggtg gaggtcttct 4861 actttgccac cgagtgctga atttagtttg tttagtttgg agtggagaag aaatggaaca 4921 cacattgggg ggtgggttga ttattgtaat ctttcaagtg aaacttttgt attccacatc 4981 aattgtaagc cttaaaaatg aaagcaaggc cagaggaaat atgttttatg ttttgagctt 5041 tgaaaaccaa cggatgaggt tgctacttaa cttatttaaa atcctgatta attaatatac 5101 ctacaattat ccgtgatatt tggttaagca aacaaacgga aagaaccagg ataaaatatt 5161 ttcaacggtc cgctaggaga ggataacacc gattttatgt tttttgtaaa ttactttgcg 5221 aatattactt tgattcaaca gatttcaaac caattgaccc accctgacac acacacatct 5281 aggctaagtt cacgattcac aatatatata tacgacatat atagagatat gcatatttgg 5341 cgaaccagaa attagacacc agaaaccaag agagtaacga gtaaggaaag tattccccgt 5401 acagcgctgc ccatttgtcg agtgcttagg cttagatgtt taaactttaa agtaaacaaa 5461 aacgatttcc gattgtatta agctttagct gtaagtccaa gtcaaacgcc tttgtacata 5521 attagtttac gcagaagcca gcaaaaagaa aagcaaagaa aaggagaaca actttaaatt 5581 ccaaaactac gaaaggtctt aagaatttcc attgtcattt atacttattt ttttttttct 5641 tccaacattt acatatatat tctttgatct gtaaatagaa cttgtttgtt tgttttgtta 5701 agctttaaag cggacgccat tttgtgtgtg caaacgtgtg gatttgcaag aagcgaaaag 5761 taaaacttat agccaaccca tatacattat atagctatat gcgtaagtga agcaattttt 5821 ttttccctaa cgataatcga gcttagaaaa gagtaaaagt tttgtgcagc cgaccgcggc 5881 ccaggtctct aaaaaagaca agcagcttaa tttagttata cgaacccata cgattaagcc 5941 caatttagtg ggtaagccta catgtatagc gaatatatac gatactttaa ttttgtgtac 6001 ttcctaagta atttgtgcga taccgaatac cgagttgcga attaaaagtt acaaattttc 6061 ataaacca