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LOCUS XM_017151202 1873 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017151202 VERSION XM_017151202.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151202.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1873 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1873 /gene="Pex5" /note="peroxin 5; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108063916" CDS 1..1689 /gene="Pex5" /codon_start=1 /product="peroxisomal targeting signal 1 receptor" /protein_id="XP_017006691.2" /db_xref="GeneID:108063916" /translation="MSFRPLVEGDCGGVNPLMQLGGQFTRDVAHKDEGYVQRQFERGA RPEDQLINEFLGQVAAPPQSFQMDTLLQEMRDINIHGNPQQQQMQQLQAEQWGQDFAR GLAPALPNKMIHMQAQQQDLQHAQEFFDEPLISSQNFRPLHRQPLMAITAGQQLQQQQ DPFFDSAMETIVTDNLPQAPQGESLDDWISDYQRSAAQKEQTASNFNEKFWQRLQDEW QKLADENEHPWLSEYNDNMDAYKEYEFAEENPMAELENAFEKGKEYLAKGDIPSAVLC FEVAAKKQPERAEVWQLLGTSQAENEMDPQAIAALRRAYDLQPDNQQVLMALAVCYTN EGLQNNAVRMLCSWLAVHPKYQHLAAAHPELQDEGTALASSLIGPSRLRDLQQIYLEA VRQNPAQVDADVQEALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGS RSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALTMQAHTNAARE LPNAAMAATSSGQNQMSESIWSTVKMVISLMGRSDLQGHVSDRNLAALNEAFKD" misc_feature 748..1527 /gene="Pex5" /note="Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis]; Region: LapB; COG2956" /db_xref="CDD:442196" misc_feature order(772..777,784..789,793..795,865..867,874..879, 886..891,895..900,967..969,976..981,988..993,1000..1002) /gene="Pex5" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature 772..846 /gene="Pex5" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 859..951 /gene="Pex5" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 964..1035 /gene="Pex5" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 1204..1290 /gene="Pex5" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature order(1207..1209,1216..1221,1228..1233,1237..1239, 1309..1311,1318..1323,1330..1335,1339..1344,1411..1413, 1420..1425,1432..1437,1444..1446) /gene="Pex5" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature 1303..1395 /gene="Pex5" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 1408..1491 /gene="Pex5" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" polyA_site 1873 /gene="Pex5" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atgtcgttcc gcccgctggt cgagggcgac tgcggcggcg tgaatccgct gatgcagctg 61 ggcggccagt tcacccgcga tgtggcccac aaggacgagg gctacgtgca gcggcagttc 121 gagcggggcg cccgtcccga ggaccagctg atcaacgagt tcctgggcca ggtggccgcc 181 ccgccgcagt ccttccagat ggacaccctg ctgcaggaga tgcgggacat caacatccac 241 ggcaatccgc agcagcagca gatgcagcag ctgcaggcgg agcagtgggg ccaggacttt 301 gcccgcggcc tggcccccgc cctgcccaac aagatgatcc acatgcaggc gcagcagcag 361 gacctgcagc acgcccagga gttcttcgac gagccgctca tcagcagcca gaacttccgg 421 ccgctgcacc ggcagccgct gatggccatt acggccggac agcagctgca gcagcagcag 481 gaccccttct tcgactcggc catggagacc atcgtgacgg acaacctgcc ccaggcgccg 541 cagggcgagt cgctggacga ctggatcagc gactaccagc gcagcgccgc gcagaaggag 601 cagaccgcct ccaacttcaa tgagaagttc tggcagcgcc tgcaggacga gtggcagaag 661 ctggccgacg agaacgagca cccctggctg tccgagtaca acgacaacat ggacgcctac 721 aaggagtacg agttcgccga ggagaacccc atggccgagc tggagaacgc gttcgagaag 781 ggcaaggagt acctggcgaa gggcgacatt cccagcgcgg tgctctgctt cgaggtggcg 841 gccaagaagc agccggagcg cgccgaggtc tggcagctgc tgggcacctc gcaggcggag 901 aacgagatgg acccgcaggc cattgcggcg ctgaggcgcg cctacgacct gcagccggac 961 aaccagcagg tcctgatggc cctggccgtc tgctacacca acgagggcct gcagaacaac 1021 gccgtgcgca tgctgtgcag ctggctggcc gtgcacccca agtaccagca cctggcggcc 1081 gcccatccgg agctgcagga cgagggcact gcgctggcct cctcgctgat tggtcccagc 1141 aggctgcgcg acctgcagca gatctacctg gaggcggtgc gtcagaaccc ggcgcaggtg 1201 gacgccgacg tccaggaggc cctcggcgtg ctctacaatc tgtccgggga gttcgacaag 1261 gcggtggact gctaccagtc cgccctgcag gtggatccgc agaatgccaa gacgtggaac 1321 cgcctgggcg ccagcctggc caacggctcg cggtccgtgg aggcggtgga ggcctaccag 1381 caggcgctgc agctccagcc gggcttcatc cgggtgcgct acaacgtggg cgtctgctgc 1441 atgaacctaa aggcctacaa ggaggcggtg gaacacctgc tgacggcgct caccatgcag 1501 gcccacacca acgccgcccg ggagctgccc aatgcggcga tggcggccac cagcagcggg 1561 cagaaccaga tgtccgagtc catttggagc acagtcaaga tggtcatctc gctgatgggt 1621 cgcagcgatc tccagggcca cgtgagtgac cgcaatctgg cggccctgaa cgaggccttc 1681 aaggattaac caccaatcag cagccctatt gtcatgtata tttttctatc gttatatctg 1741 taagcaatta aatacttctg tggtatctaa ggatgaattt gtattgtaaa gaaaccattc 1801 cggctagatt cgttgttgtc cgtatatttt tctatgtcct tatccttaag cgattaaata 1861 actgttgagg aaa