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LOCUS XM_017151193 3717 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017151193 VERSION XM_017151193.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151193.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3717 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3717 /gene="PGAP1" /note="GPI inositol-deacylase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108063909" CDS 91..3015 /gene="PGAP1" /codon_start=1 /product="GPI inositol-deacylase isoform X1" /protein_id="XP_017006682.2" /db_xref="GeneID:108063909" /translation="MFMFRNCAVLLVIGSICCLLYGLFNLHVEVEPNACRMTYMFGEP MFAKVGVKGGDEYPNYGLYYYYEGLRQPLDPLKRRMTGAPVIFVPGNAGSYKQVRSLA SVALRKAMSDDAGLHLDYYTIDYDEELSALYGGYLPRQRSYLKLCIRTILSIYEGRAE QPSIVLIGHSMGGKLAQSVLVDPSIGQHINTIVSISTPLDQPVLNLDAQLEGFYGQTD AVLAKLRTATVPTVTTNVCDSLHQRPPSVQRMASQDSSARLDNVLLISTGGGNRDLLV RPGLTSSRFNDLHAMTSAIPRVSLSCDHLSAVWCLQFMQAINRFLFSIAYVREDRSSI AFGTNKQRNLQSALATFVKPRRRQQSTVRFGAAGNWHEERRLVINKYFSNGLKGIFFD LIGLQRQERYRKMAIEALNVDDEDWLFGCSAQEHNQTGQLYCERATSLMHLVQRLPNE DRDPRSIAILDLHNLRKTYVQWSHVLVRLPPSAKRIGYNLDIYDPRERVTDIKMPRWY TMAKLPLINETLQGTLHQRLRVAEMVDPYQSIRVIVEPLQCISAEYRVTARICVPWAA GFERFQTLKSFDQKPQLYVNVPTLVPRHYNTTLNPVTLDLYLDPTCRYRISYEYSYSS ALSRLILEFYGWLPAHLVCVLLIVLRKQVETFHEVGTFRSLRPYVGYLQYTSLYVVTA CRLLKKLIITSRLLPEPESLDYSINVSIVIHCAAIALSLLATLGTWLALTLYGNAFYR LALRITRLSQPTSNVMLSIMTHLPITFGILTIATAMGTCSGVGLLLAFVFYFLMLSNA YKDYLEDFLWQKAANLVRGKPAAVAAEEPNAEEEALETKQEQQPEEEEPEPCVGLQNF SFHVTLLLMLLVQLLLNAPSSLAWVRSRRHGIDLPDPSLYPSIVVMASLSLLLQLRAP QKCQGYWMLSLVFYLLAGVVLLYCQAAIYRLTYVIAGAFALLSVHQSLWILWRRLSSP QI" misc_feature 325..1062 /gene="PGAP1" /note="PGAP1-like protein; Region: PGAP1; pfam07819" /db_xref="CDD:369540" polyA_site 3717 /gene="PGAP1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acaactatcg cctctcgata gcaccgctcg catctctagc gcagctgggc catcaagaca 61 taaacagaaa tgaaaaactg aaaatcgagg atgtttatgt tccgaaactg tgctgttctg 121 ctggtgatcg gctcgatatg ctgcctcctc tacggcctct ttaatctgca cgtggaggtg 181 gagccgaatg cctgccggat gacctacatg ttcggcgagc ccatgtttgc gaaagtcggg 241 gtcaagggcg gcgatgagta tccaaattac ggtctgtact actactacga gggcctgcga 301 cagccgctgg atccgctgaa gcgccggatg acgggtgctc cggtgatctt cgtgcccggc 361 aacgccggct cctacaagca ggtgcgctcc ctggcctccg tggcgctgcg caaggcgatg 421 tccgacgacg cgggcctcca cctggactac tacaccattg actacgacga ggagctgtcc 481 gccctgtacg gcggctatct gccccgccag cggagctacc tgaagctctg catccgcacc 541 atcctctcga tctacgaggg tcgcgcggag cagccctcca tcgtcctgat tggccactcg 601 atgggcggca agctggcgca gtccgtcctg gtggatcctt caattggcca gcacatcaac 661 acgattgtca gcatctccac gcccctcgac cagccggtgc tcaatctgga tgcccagctg 721 gaggggttct acggccaaac ggacgccgtg ctggccaagc tgcgcacggc cacggtgccc 781 acggtgacca ccaatgtgtg cgacagcctg caccagcggc cgccgagtgt gcagcgcatg 841 gccagccagg acagctcggc gcggctggac aacgtgctgc tcatctcgac gggcggcggc 901 aacagggatc tgctggtgcg gccaggactc accagctcgc ggttcaacga tctgcacgcc 961 atgacctcgg ccatacccag agttagcctg agctgcgacc atctatccgc cgtgtggtgc 1021 ctgcagttca tgcaggccat caacaggttt ctcttcagca ttgcgtatgt gcgcgaggac 1081 cgctcgtcga tcgcttttgg caccaacaaa cagcgcaacc tgcagtcggc tttagccacc 1141 tttgtcaaac cgcggagacg gcaacagagc accgtgcgat tcggagcggc tggaaattgg 1201 cacgaggagc ggcgtctcgt gataaacaag tactttagca acggactgaa gggcatcttc 1261 ttcgatttga tcggcttgca gcgccaggag aggtacagga aaatggccat tgaggcgttg 1321 aatgtggatg acgaggactg gttgtttggc tgctcggccc aggagcacaa ccagacggga 1381 cagctttatt gcgaaagggc cacctcgctg atgcacctcg tccagcggct gcccaacgaa 1441 gatcgcgatc cccgcagcat cgccatcctg gatctgcaca acctgcgcaa gacctacgtg 1501 cagtggagcc acgtgctggt gcgcctgccg ccgagcgcca agcgaatcgg ctacaacctg 1561 gacatctacg atccgcggga gcgcgtgacg gacatcaaga tgccgcgctg gtacaccatg 1621 gccaagctgc cgctgataaa cgagaccctg cagggcacgc tgcaccagcg gctgcgcgtc 1681 gccgagatgg tggatccgta ccagagcatt cgggtgattg tggagccgct gcagtgcatc 1741 agtgcggagt accgggtgac cgccaggata tgtgtgccct gggcggcggg ctttgagcgc 1801 ttccagaccc tcaaatcgtt tgatcagaaa ccccagttgt atgtaaatgt gccgacttta 1861 gtgccccggc attacaatac cactctgaat ccggtgacac tggatcttta cctggatccc 1921 acttgccgct atcgcatcag ctatgagtac tcctactcct cggccttgtc gcgattgatt 1981 ctcgagtttt acggctggct gccggcccat ctggtctgcg tcctgctgat tgtgctgcgg 2041 aagcaggtgg agaccttcca cgaggtggga accttccgca gcctgcgtcc ctatgtgggc 2101 tacctgcagt acacgtcgct ctatgtggtc acagcctgtc gcctgcttaa gaagctaatc 2161 atcaccagcc gcctgttgcc cgagccagag tccctggact acagcatcaa tgtgtccatt 2221 gtgatccact gcgcggccat cgccctgtcc cttttggcca ccctgggcac ctggctcgcc 2281 ctgacgctct acggcaacgc cttctaccgc ctggccctgc gcatcacacg cctctcgcag 2341 cccacctcca acgtgatgct ctcgatcatg acccacctgc cgattacgtt cggcatcctg 2401 accatcgcca cggccatggg aacctgcagc ggagtgggtc tgctgctggc ctttgtcttc 2461 tacttcctga tgctgtcgaa tgcctacaag gactatctgg aggactttct ctggcagaag 2521 gcggctaact tggtgcgcgg caagccagct gcagtggcag cggaggagcc gaacgcagaa 2581 gaggaggctc tggaaacgaa gcaggagcag cagccggagg aggaggaacc ggagccctgc 2641 gtgggcctgc agaacttctc ctttcacgtc actctgctgc tgatgttgct cgtgcagctg 2701 ctgctcaatg ctcccagtag tttggcctgg gtgcgcagtc gtcggcatgg cattgacttg 2761 ccggatccga gcttgtatcc cagtatcgtg gtcatggctt cacttagttt actcctgcag 2821 ctaagggctc cccaaaaatg tcagggctac tggatgcttt cgctcgtgtt ttaccttctg 2881 gccggcgtgg ttctactgta ctgccaggcg gccatctaca ggctgaccta tgtgattgcc 2941 ggggccttcg ccctgctctc cgtgcaccaa agtctttgga tattatggcg tcgtctgtct 3001 agtccccaaa tctagtttga attttgttct ccaagcgtta attcgttatt tattgctgcg 3061 ttagttggtt cagttgcgta agccagcccc gtttgggatc tctcctccag cgggaagtcc 3121 aaactgggcc ccaatgggcg ttgctctcga tttgcctcga tcgcacatta cacgtattaa 3181 ttgtttttac gcctgtcgcc ggcgctttag gcgctggtta gcgatacctc ggacatctcg 3241 ggcggccgca cgttaatctc catttgcgga aaatgtgtga aaatgtgcga aaatgccttg 3301 gaacagccac actccccagc cagactgtag tttgatttta gccaaagacg ttacttttag 3361 tattttatct ttttatcctt tccgaaatta tttaattcat agtattatta atcctttgtt 3421 gtggaataca tatcttaatt taagatcata tgagattgag tgaggatttt gtaaagaaaa 3481 tctaaagcaa tagaaattaa ctattttctt tatttttatt gtttgtatat tattttttaa 3541 tcatccccca acaatctgta ttcttccgac taagtaatag acctaatgta gctgccaagt 3601 gtcacaaaca gaaacaattc gatgtatgta taaatattgt aaaatgtttt catttagaaa 3661 gtcccttgtt tttaccccta aacgaataca attttataca tttgtaaact ccgaaaa