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LOCUS XM_017151192 3066 bp mRNA linear INV 09-DEC-2024 paraplegin (Spg7), mRNA. ACCESSION XM_017151192 VERSION XM_017151192.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151192.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3066 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3066 /gene="Spg7" /note="SPG7 matrix AAA peptidase subunit, paraplegin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108063908" CDS 246..2672 /gene="Spg7" /codon_start=1 /product="mitochondrial inner membrane m-AAA protease component paraplegin" /protein_id="XP_017006681.2" /db_xref="GeneID:108063908" /translation="MMLKGLRHVRNMLQRGGSQLAQIRGATGLQAPRTGRELSLLQLS RQQVRQLQAEYKAIVGLIARSLQLTPQEVRLMHLRSLSTAGKPPPAEGKAEKSPKDAA KTDEGSPKEKPQESSKDEASSSPNPSPSSSAGEPGEDPNKNSNENDEKMRSVLTKAVL WLFTIYMFVAFFSLLITPRSERPEGSTRYVSWNEFVHHMLAVGEVKELIIRPDMEMVT IILHEGAVIKGRKVSSSIFHMAVADATRFEEKLREVEKRLGIKDGVPVTYDRQTDTTG RILMLLLVCALLVSIATRMKSMKSPLSMDSFNQMGRAKFTLVDPFDGGRGVLFRDVAG LSEAKQEVKEFVDYLKSPEKYQRLGAKVPRGALLLGPPGCGKTLLAKAVATEAQVPFL SMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAIGRQRSGTESMGQGSSG ESEQTLNQLLVEMDGMATKEGVLMLASTNRADILDKALLRPGRFDRHILIDLPTLAER KEIFEKHLSSVKLESPPATFSQRLARLTPGFSGADIANVCNEAALHAARNTQKEVSSK NLEYAVERLVGGTEKRSHALSLAERKVIAYHESGHALVGWMLPNSDILLKVTIVPRTS LALGFAQYTPSEQHLYSKEELFDKMCMALGGRAAENLVFNRITTGAQNDLEKVTKIAY SQIKKFGMNATLGPIYVRDADETEGGGAMGSGGKKPFSRAMESLIDNEARHVVASAYQ TTEGILATHRDKLEKLAEALLEKETLDYDQVVELIGPPPYDLGKRQVDGVEFEQSLKN LGSDTDATKA" misc_feature 744..2576 /gene="Spg7" /note="ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]; Region: HflB; COG0465" /db_xref="CDD:440233" polyA_site 3066 /gene="Spg7" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 attctgggcg catgcagcct actatttgcg gcaaaccaaa tttcgtgtgt ttttatttaa 61 gttaaatcat catttttcgg ggctggccaa aagcgaggcg cagaaattgg tagcgaaagc 121 caagccgtcg ggccgtagtt cagtattacc aggagatatc gactccatac tcaattggca 181 gctgtcaagg aagtagaatt acgtaggagt tacgtagtcg cccgaagttc gggattcgaa 241 aggaaatgat gttgaagggc ctgcggcatg tgcggaacat gctgcagcgc ggtggctccc 301 agttggccca gatccgcggc gccacggggc tccaggcccc gcgaactggc cgggagctct 361 cgctcctcca gctcagccgg cagcaggtga ggcagctgca ggcggagtac aaggcgattg 421 tgggcctgat agcccgctcg ctgcaactga cgccccagga ggtccgactg atgcacctgc 481 gcagcctgag caccgcagga aaacctcctc ccgcggaggg caaggcggaa aagtccccaa 541 aggacgcagc caagactgac gaaggttccc ccaaggagaa gccacaggag agcagcaaag 601 acgaggcctc cagtagtccc aatcccagtc ccagcagctc tgccggcgaa cccggcgagg 661 atcccaacaa gaacagcaac gagaacgacg agaagatgcg ctccgtgctg accaaggcgg 721 tcctctggct cttcaccatc tacatgttcg tggccttctt ctccctgctg attaccccgc 781 gttccgagcg accagagggc tccacgcgct acgtgtcctg gaacgagttc gtgcaccaca 841 tgctggccgt gggcgaggtc aaggagctga tcattcggcc cgacatggag atggtcacca 901 tcattctgca cgagggcgcc gtcatcaagg gccgcaaggt ctcgtccagc atcttccaca 961 tggcggtggc cgatgccacc cggttcgagg agaagttgcg cgaggtggag aagcggctgg 1021 gcatcaagga cggcgtgccg gtgacctacg accgccagac ggacaccacc gggcgcatcc 1081 tcatgctgct gctcgtctgc gccctgctcg tctccattgc cacgcgcatg aagagcatga 1141 agagcccgct cagcatggat tcctttaacc aaatgggccg ggccaagttc acgctggtcg 1201 atcccttcga cggcggccgc ggcgtgctct tccgcgacgt cgccgggctc agcgaggcca 1261 agcaggaggt gaaggagttc gtcgactacc tcaagtcgcc ggagaagtac cagcgcctgg 1321 gcgccaaggt gccgcgcggc gccctgctcc tcggaccgcc gggctgcggc aagacgctgc 1381 tggccaaggc ggtggccacc gaggcccagg tgccgttcct cagcatgaac ggctccgagt 1441 tcatcgagat gatcggcggc ctgggggcgg cgcgagtgcg cgatctgttc aaggagggca 1501 agaagcgggc gccgtgcatc atctacatcg acgagataga cgccatcggg cggcagcgct 1561 cgggcacgga gagcatgggc cagggcagct cgggcgagtc cgagcagacg ctcaaccagc 1621 tgctggtcga gatggacggc atggccacca aggagggcgt gctcatgctg gccagcacga 1681 atcgggcgga tattctagat aaggcccttt tgcgccccgg tcgctttgat cgccacatcc 1741 tcatcgatct gcccacgctg gcggaacgca aggagatatt cgagaagcac ctgtcctcgg 1801 tgaagctgga gtcgccgccc gccaccttct cgcagcgcct ggcccgcctg acgccgggct 1861 tctcgggcgc ggacatcgcc aacgtttgca acgaggctgc cctgcatgcg gcgcgcaaca 1921 cccaaaagga ggtcagcagc aagaacctgg agtacgcggt ggagcggcta gtgggcggca 1981 ccgagaagcg ctcgcacgcc ttgtcgctgg ccgagcgcaa ggtgatcgcc taccacgaat 2041 ccggacatgc tttggtgggc tggatgctgc ccaactcgga catcctgctc aaggtgacca 2101 ttgtgccgcg caccagcttg gccttgggct tcgcccagta cacgccgagc gaacagcacc 2161 tgtacagcaa ggaggagctg ttcgacaaga tgtgcatggc gctgggcggc cgggcggccg 2221 agaatctggt cttcaatcgc atcacgacgg gcgcccagaa cgacctggag aaggtgacca 2281 agatcgcgta ctcgcagatc aagaagttcg gcatgaacgc gaccctggga cccatctatg 2341 tccgcgatgc cgacgagacg gagggcggcg gcgcgatggg cagcggcggc aagaagccct 2401 tctcgcgggc catggagagc ctgatcgaca acgaggcgcg ccacgtggtg gccagcgcct 2461 accagaccac cgaggggata ctcgccacgc accgcgacaa gctggagaag ctggctgagg 2521 cgctgctcga gaaggaaacg ctggactacg accaggtggt ggagctgatt ggtccgccgc 2581 cttacgacct ggggaagcgg caagtggacg gcgtggagtt tgagcagtca ctgaagaacc 2641 tgggcagcga cacggacgcc acgaaagcct gaggcttgga gtcgaactca gattcagatt 2701 caggttaaga gtcacagtca cagtcacagt cattcatcat acgccacgtg ggcccagtcg 2761 ctcacctttc cgcccgttgt ccgcccctgg ttcatgttcg ttgaatgtaa ataaagttgt 2821 ttaccttttt aaatgattcc aagccgtatt cattgtctaa ttgcccgcta ataagccgcg 2881 tctcgtcgtc tcgggcaagg cgatttcgat ttgcaactac ctaacggata aaacagtcca 2941 acttcagtaa tgaaatcaat cgaaaatcga aagtgaatat agctgtgact ttgactggca 3001 aataaattgt tatgtaattt ttctattgtt gagctgaaag caatatatta aaatctgttt 3061 agaaag