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LOCUS XM_017151182 3454 bp mRNA linear INV 09-DEC-2024 (Rbf), mRNA. ACCESSION XM_017151182 VERSION XM_017151182.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151182.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3454 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3454 /gene="Rbf" /note="Retinoblastoma-family protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108063902" CDS 423..2987 /gene="Rbf" /codon_start=1 /product="retinoblastoma family protein" /protein_id="XP_017006671.1" /db_xref="GeneID:108063902" /translation="MSEPEPQELGAEVVSGSVATSDDGQEMTKAKYTNLCRELNMDRQ TELQGYQMYHEVSQRCSLEGESIHWLCCALYAACRRSSTPTVIGQDAVVRGNCVSLNN LLRCCQMSIYDFKTKIKQWCDMANLPQEFVNEIEVLDRKFSITFTLYKRFRTIFDKIF SCPPNEKKHSKYISLHGNHAHGKCSYIKLDDICWRLFLCAKNQKPSNTVDLVTSFNLM ICCIDLIYNNVLAEKRTDLINSKFEGLPSNWTELDLRHKQHCILAYFCDMTEEAKAMK ATTFRQIMSSFFQTSTIYGSKDTMLGLLSNENFERNLKSLNISYEQYVLSVGEFDERI LSAYDAGDHTGLNDQSLRPPVTPLTRKQDLPAQPSMAGDKFEPVRNATNNVKQLSAFS RITEPTDFVKQAGEEVIAKLLNIIEEIKQKFLAKYPSTEAKSRFQLAKSFYFYLLDQI LQAEIRNKPDIDLKRLLVQKISLDIFNITLMACCVELVLEAYETELKFPWVLDCFSIS AFEFQKIIEIVVRHGSHEGCLNRSLIKHLNSIEETCLERLAWARDSTVWDMISSAPPP LPTSLVVNRDRSAGALQIFLRKVYLLGWLRIQKLCSELGLCEKTPECIWHIFEHSITH ETDLMKDRHLDQNIMCAIYIYIRVKRMEDPKFSDIMRAYRNQPQAVNSVYREVFIEFN DEGEPKVKDIIQFYNNIYVPMIRQFAIDYLNVTPDVSGRNSDLLLSPHPKERAAQPKK VTQNHSLFVSQMPKNEIQQSPNQMVYRFYHSPAKDLQLMNEKVRGGKRMLSFGDEPGL GGIAEAKQRLVVRDLPPHLSQIKAVLDDRDRDRERELQAAVPAEGSGRGAGGEHET" misc_feature 690..1106 /gene="Rbf" /note="Domain of unknown function (DUF3452); Region: DUF3452; pfam11934" /db_xref="CDD:463402" misc_feature 1551..2102 /gene="Rbf" /note="Retinoblastoma-associated protein A domain; Region: RB_A; pfam01858" /db_xref="CDD:460364" misc_feature 2163..2537 /gene="Rbf" /note="Retinoblastoma-associated protein B domain; Region: RB_B; pfam01857" /db_xref="CDD:460363" polyA_site 3454 /gene="Rbf" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cttatcatcg gtggaaacaa gaagaagaag aagaacacgt acaaaaaaaa aaagaagaaa 61 agcggattat ccgcgaaaat tgggacgaaa aaggctttag cttcgtgttg ggcagtgtga 121 aggcaaagtg cagcaagtgc aagtgaaagt gtgaaggagt cgccgagtcg agtcgccgga 181 aatccgcacc ctctcgctca atctccccga cttggcaacc tcgccgcgtt ttcccgcctt 241 tttctatgtt acatgtgcgt gaggagcgaa gcgggtcgag cagcgcacac cggcagccac 301 taggagcagt cagcgataag tctagagcta cgacgtttca ctgaaggtga accaaccccg 361 ggaaaaccta gataaagagc ggaaaattca gccgggaaag cagctacagc agctacccag 421 cgatgagtga gcccgagccg caggagctgg gcgccgaggt ggtcagcgga tcggtggcca 481 cgagcgacga cggccaggag atgaccaagg ccaagtacac gaatctgtgc cgtgagctca 541 acatggaccg ccagacggag ctgcagggct atcagatgta ccacgaggtc tcccagcgct 601 gctccttgga gggcgagtcc atccactggc tgtgctgcgc cttgtacgcc gcctgccgga 661 gatccagcac gcccacggtg attggccagg atgcggtggt caggggcaac tgtgtgtccc 721 ttaacaacct gctgcgctgc tgccagatga gcatatacga cttcaagacg aagatcaagc 781 agtggtgcga catggccaac cttccccagg agtttgtcaa cgagattgag gtgctggacc 841 gcaagtttag catcaccttt accctgtaca agcgcttccg caccattttc gacaagatct 901 tctcctgtcc gcccaacgag aagaagcact ccaagtacat ctccctgcat ggcaaccatg 961 cccatggcaa gtgctcgtac atcaagctgg acgacatctg ctggcggctc ttcctctgcg 1021 ccaagaatca gaagcccagc aacaccgtgg atctggtgac ctcgttcaac ctgatgatct 1081 gctgcatcga tctgatatac aacaatgtgc tggccgagaa gcgcaccgat ctcatcaata 1141 gcaagttcga gggcctgccg agcaactgga cggagctgga cctgcgtcac aagcagcact 1201 gcattctggc ctacttttgc gacatgaccg aggaggcgaa ggccatgaag gccaccacct 1261 tccgccagat catgtcgagc ttctttcaga cttcgaccat ctacggcagc aaggacacca 1321 tgctgggcct gctgtccaac gagaactttg agcgcaacct gaaatccctg aacattagct 1381 acgaacagta cgtgctcagt gtgggcgagt tcgacgagcg cattttaagt gcctacgatg 1441 cgggcgacca cacggggctc aacgaccagt cgctgcgtcc gcccgtgacg ccgctcaccc 1501 gcaaacagga cctgcccgcc cagccgtcga tggcgggcga caaattcgag cccgtccgca 1561 acgccaccaa caatgtgaag cagctgagcg ccttcagtcg catcaccgag cccacggact 1621 ttgtcaagca agctggcgaa gaggtgatcg ccaagctgct caacatcatc gaggaaatca 1681 agcagaaatt cctcgccaaa tatccctcga cggaggcgaa gagccgcttc cagctggcca 1741 agtccttcta cttctacctg ctcgaccaga tcctgcaggc ggagatccgc aacaagcccg 1801 acatcgatct caagcgtctg ctggtgcaga agatctcgct ggacatcttc aacatcacgc 1861 taatggcctg ctgcgtggag ctcgtgctgg aggcctacga gacggagctc aagttcccct 1921 gggtgctcga ctgtttcagt attagtgcgt tcgagttcca gaagatcatc gagattgtgg 1981 tgcggcacgg ctcgcacgag ggctgtctga atcgctcgct gatcaagcac ctcaactcga 2041 tcgaggagac gtgcctggag cgtttggcct gggcgcgcga ctcgaccgtc tgggacatga 2101 tctcctccgc cccgccgccg ctgcccacgt cgctggtggt gaatcgcgac cgctccgccg 2161 gcgccctgca gatcttcctg cgcaaagtct acctcctggg ctggctgcgc atccagaagc 2221 tctgctcgga gctggggctg tgcgagaaga cgcccgagtg catctggcac atcttcgagc 2281 actcgatcac ccacgagacg gacttgatga aggaccgcca cctcgatcaa aatatcatgt 2341 gtgcaatata tatctacatt agagtaaagc gaatggagga ccccaagttc agtgacatca 2401 tgcgggcata tcgcaaccag ccgcaggcgg tgaacagcgt ctaccgcgag gtgttcatcg 2461 agttcaacga cgagggcgag ccaaaggtga aggacatcat tcagttctac aacaacatat 2521 atgtgccgat gatccgccag ttcgccatcg actacctgaa cgtaacgccg gacgtgagtg 2581 gccgcaactc ggacctgctg ctctccccgc atcccaagga gcgggccgcc cagcccaaga 2641 aggtcaccca gaaccactcg ctcttcgtct cccagatgcc caagaacgag atccagcagt 2701 cgcccaatca gatggtctac aggttctacc acagtccagc caaggacctc cagctgatga 2761 acgaaaaggt acgcgggggc aagcgcatgc taagcttcgg ggacgagccc ggcttgggcg 2821 gcattgcgga ggcgaagcag cgcctggtgg tgcgcgacct gccgccgcat ctcagccaga 2881 tcaaggccgt cctggacgac cgggacaggg atcgggaacg ggagctgcag gccgccgtgc 2941 ccgccgaggg gagcggccgg ggagcaggag gagaacacga gacatagaca cggggctttt 3001 cgggggcagc ttagacttaa ggctattaca acacaaacac aacacaaaaa cacagaaaaa 3061 ctaaaaaaaa accggcgccg agggccactc tttttacacg ctggctactc cggcgcacgt 3121 tcgactattt tatgattgtt tttttttatt attaactctt ttagtatgac attttaattt 3181 aaaacccaac cacaaccaat cgtacgcatc tcttttatag tttgtttaac gccagccaac 3241 catataattc atatgataac cccatacaca atgtaaacac ccgaaacttg aagggaattt 3301 tagtaaatac ctgaacacca caacacaaac acacacacat ccatcggtcg caggtccttg 3361 gatctcatgg atcagcgacc actaacaaat caaattaagg caatccacat tatatataca 3421 aacatatata caaatacact ttataaaaat tgaa