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LOCUS XM_017151177 3148 bp mRNA linear INV 09-DEC-2024 sorting-associated protein 18 dor (dor), mRNA. ACCESSION XM_017151177 VERSION XM_017151177.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151177.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3148 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3148 /gene="dor" /note="vacuolar protein sorting-associated protein 18 dor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108063897" CDS 71..3064 /gene="dor" /codon_start=1 /product="vacuolar protein sorting-associated protein 18 homolog" /protein_id="XP_017006666.2" /db_xref="GeneID:108063897" /translation="MDQAMPNQPKFLPRVEGNSYVATASGNPFETDEEEEIFSRHKMV LRVPSHCTGDLMHLAVSRNWLLCLMGTADRTTLLRFFLPRAIPPGEAALEKYLSGSGY KITRLFLDPTGHHLIIALVPKSASAGVSPDFLYIHCLESPQAQQLKVRRIEKFKDHEI TAVAFNPYHGSDSSTGPILLGTSRGLIFETELNPAADGHVQRKQLYDLGLGRPKYPIT GLRLLRVPNSSRYIVVVTSPECIYTFQETLKPEERSLQSIFAGYVSGVQEPHCEERKT DLTYSQLRFFAPPNSKYPKQWAWLCGEGIRVGELSIEANSATTLIGSTLINLDFEKAM HLSYEERRLNIPKSFVLTEYHAVLLYADHIRAICLLNQEQVYQETFDESRLGRLLNIE RDEMTGSIYVYTTRTVFNLRVTREERNVWRIYLDRGQYELATAHAAEDPEHLQLVLGQ RADAAFAEGSYQVAADYYAETDRSFEEVCLKFMVLPDKRPIIDYVKKRLGRLTTRKQM EEEDVEDSDEANSIKALVIWLIDLYLIQINMPDQDDEGRRAWQAEYDEFMLEAPVLAC MRQNREAVQQLIAEHADPHNMARFAIAIGDYDEVVAQQLKAECYAEALQTLSTQRNPE LFYKYAPQLMVKLPKPTVDALMAQSSRLEVEKLVPTLIAMENREQREQTQRYLEFAVY KLNTTNDAIHNFLLHLYAEHEPKLLMKYLEIQGRDESLVHYDIHYALKVCSDLQVKEA CVFLECLLRKWIAAVELALTFDMKLAKETASRPSDSKLRRKLWLRIAYHDIKGTNDVK RALNLLKECDLLRIEDLLPFFSDFEKIDNFKEAICDALSDYNQRIQELQREMAETQEQ SDRVVAELQQVRERSITMNAQDTCGVCEMMLLVKPFFAFICGHKFHSDCLEKQVLPML TKEQTRRLAALRQQLEAEVQPQAQAQSMALSRQQAKELQHKRASLKTQIEDILAADCL FCGLLINTIDQPFVDDWEQVNVEWE" misc_feature 980..1441 /gene="dor" /note="Pep3/Vps18/deep orange family; Region: Pep3_Vps18; pfam05131" /db_xref="CDD:461557" misc_feature 2003..2404 /gene="dor" /note="Region in Clathrin and VPS; Region: Clathrin; pfam00637" /db_xref="CDD:459884" misc_feature 2582..>2683 /gene="dor" /note="nucleotide exchange factor GrpE; Region: GrpE; cl03075" /db_xref="CDD:446000" misc_feature 2702..2998 /gene="dor" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(2708..2710,2717..2719,2759..2761,2765..2767, 2774..2776,2783..2785,2981..2983,2990..2992) /gene="dor" /note="cross-brace motif; other site" /db_xref="CDD:438111" polyA_site 3148 /gene="dor" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cagtgccatc acttttgcat tggggcgtat ttggatcggg ggacaataaa cattgaagtc 61 cagctgcaaa atggaccagg caatgcccaa ccagcccaag ttcctgcccc gcgtcgaggg 121 caactcgtac gtggccaccg cctcgggcaa tcccttcgag acagacgagg aggaggagat 181 cttcagcagg cacaagatgg tgctccgggt gcccagccac tgcaccggcg acctgatgca 241 cctggccgtc tcgcgcaact ggctgctctg tctgatgggc accgcggatc gcaccaccct 301 gctccgcttc ttcctgcccc gcgcgattcc tccgggtgag gctgccctgg agaagtacct 361 ctcgggctcc ggctacaaga taacgcgcct gttcctggac cccactggcc accacctcat 421 catcgcgctg gtgcccaagt cggcctccgc gggcgtctcg cccgacttcc tgtacatcca 481 ctgcctcgag tcgccgcagg cgcagcagct caaggtgcgc cgcatcgaga agttcaagga 541 ccacgagatc acggccgtcg ccttcaatcc gtaccacggc agcgactcct cgacgggccc 601 catcctcctg ggcacgagtc gcggcctcat cttcgaaacg gagctgaatc ccgccgccga 661 tggccacgtg cagcgcaagc agctgtacga tctgggcctg ggtcgtccca agtatcccat 721 cacgggcctc agactgctgc gggtgcccaa tagcagccgg tacatagtgg tggtcaccag 781 tcccgagtgc atctacacat tccaggagac gctgaagccc gaggagcgct cgctgcagtc 841 catcttcgcc ggctatgtga gcggcgtgca ggagccgcac tgcgaggagc gcaagaccga 901 cctgacctac tcgcagctgc gcttcttcgc ccctccgaac agcaagtacc cgaagcagtg 961 ggcctggctg tgcggcgagg gcatccgcgt gggcgagctc tccattgagg ccaacagcgc 1021 caccacgctg ataggcagca cactgatcaa cctggacttt gagaaggcca tgcatctgtc 1081 gtacgaggag cggcgcctga acatccccaa gtccttcgtg ctgaccgagt accatgccgt 1141 gctcctctac gccgatcaca tacgggccat ctgcctgctc aaccaggagc aggtctacca 1201 ggagaccttc gacgagtcgc ggctgggcag gctgctgaac attgagcgcg acgagatgac 1261 cggctccatc tacgtgtaca ccacgcggac cgtcttcaat ctgcgggtga cgcgcgagga 1321 gcgcaacgtg tggcgcatct acctggacag gggccagtac gagctggcca ccgcccacgc 1381 ggccgaggat cccgagcacc tgcagctcgt cctgggtcag cgggcggacg cggccttcgc 1441 ggaagggtcc taccaggtgg cggccgacta ctacgccgag acggacaggt ccttcgagga 1501 ggtgtgcctc aagttcatgg tcctgccgga caagcggccc atcatcgact acgtgaagaa 1561 gcgcctcggc cgactgacca ccaggaagca gatggaagag gaggacgtcg aggactcgga 1621 cgaggcgaac agcatcaagg ctctggtcat ctggctgatc gacctctacc tcatccagat 1681 caacatgccc gaccaggacg acgaggggcg gcgggcgtgg caggcggagt acgacgagtt 1741 catgctggag gccccggtgc tcgcctgcat gcgccagaat cgcgaggccg tccagcagct 1801 gatcgccgag cacgcggatc cgcacaacat ggcccggttc gccatcgcca tcggcgacta 1861 cgacgaggtg gtggcgcagc agctgaaggc cgagtgctac gcggaggccc tgcaaacgct 1921 gagcacgcag cgcaacccgg agctcttcta caagtacgct ccgcagctga tggtcaagct 1981 gccgaagccc accgtggacg ctttgatggc ccagagctcc cggctggagg tggagaagct 2041 ggtgcccacg cttattgcca tggagaaccg cgagcagcgg gagcagacgc agcgctacct 2101 cgagttcgcc gtctacaagc tgaacaccac gaacgacgcc atccacaact tcctgctgca 2161 cctgtacgcc gagcacgagc cgaagctgct gatgaagtac ctcgagatcc aggggcgcga 2221 cgagagcctc gtgcactacg acatccacta cgcgctgaag gtgtgcagcg atctgcaggt 2281 gaaggaggcc tgcgtcttcc tcgagtgcct gctgcgcaag tggatcgccg ccgtggagct 2341 ggccctcacg ttcgacatga agctggcgaa ggagacggcc tcgcggccct cggacagcaa 2401 gctgcgccgc aagctgtggc ttcgaatagc ctatcacgac atcaagggca ccaacgacgt 2461 gaagagggcg ctcaatctgc tcaaggagtg cgatctgctg cgcatcgagg acctgctgcc 2521 cttcttctcc gacttcgaga agatcgacaa cttcaaggag gccatctgcg atgccctgag 2581 tgactacaat cagcgcatcc aggagctgca gcgcgagatg gccgagaccc aggaacaatc 2641 cgatcgcgtg gtcgccgagc tgcagcaggt gcgtgagcgc agcatcacca tgaatgccca 2701 ggacacgtgc ggcgtctgcg agatgatgct gctcgtcaag cccttcttcg ccttcatctg 2761 cggccacaag ttccacagcg actgcctgga gaagcaggtg ctgcccatgc tcaccaagga 2821 gcagacgcgt cgcttggccg ctctgcgtca gcagctggag gcggaggttc agccgcaggc 2881 gcaggcccag tcgatggccc tcagcaggca gcaggccaag gagctgcagc acaagcgggc 2941 gtctctaaag acccagatcg aggacatcct ggctgcggac tgcctgttct gcggcctgct 3001 catcaacacc atcgaccagc cgttcgtcga cgactgggag caggtgaatg tcgagtggga 3061 gtagcttcgt tcggatccac acacattata tatatattta tgtacatata gagtatttat 3121 taataaacct acacagatca caagagca