Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017151165 3353 bp mRNA linear INV 09-DEC-2024 (Gcna), transcript variant X2, mRNA. ACCESSION XM_017151165 VERSION XM_017151165.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151165.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3353 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3353 /gene="Gcna" /note="Germ cell nuclear acidic peptidase; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108063890" CDS 122..3157 /gene="Gcna" /codon_start=1 /product="germ cell nuclear acidic protein isoform X2" /protein_id="XP_017006654.3" /db_xref="GeneID:108063890" /translation="MADHKYRLFNAVDPSKQVDQPGVKVNPREKVEAEAAAMRVNVGA PAAGGGNLDDTAQNLDGSDYMDALQLSCSQDAGEMADVGDVEHLSAGISSLTVREPPQ PSKQEISICISSTTEENASDNDDDASCITISDSSEDEDEPLPPDSMAVSDRTADQEAI PPPMLSTDKVQRIEAFLRDVSMERREMERTGPLTPSPLSSTKRQSRSRLAEADTESMS PTDEDWQPPVDSSRRLADNETQVDTICSADATRLDSSKRLADDETEANTLGSEDLDLE HLEPRDSSKRLADNDTELNTLCSDNSTLHEEQPVPEESIEIPETSSEGEPSPQKPSSG SSASDEDDRETVHVSSINISAKINIKISIPTMESSSAEDEYPSPRATKSLPSSEEVQC EKQQPQQQEKSMLSTGDASEDEQFLTQAEKLLNQLYGKSWQTPDVIRTLKRSSGSGGK TAPLRPRNIPATAATTAKKKKPRAPPPVVRTDESVLGDFSLFTRALRTNQTPLNSTRL PPLRAVQTERRPRSQRPVTRPRTNHVDEDRWRKLIDSDSGTDASDDEDADATFSDSGS ESDSDSGRKQGQQKGGDITYLDLTKDEVEVISNPDEDSQSPKTHRRLDDILRSCRASV KAKLPATPAPQATTRRQLFTPNVGFEDETEARAIVDKALDLDMLDELESDYLPGTPVH KRVQEVRRKLGIGLPGQTTPQQSPILKLLTPKTAPPKALGPPKTTAPPKSTARKAKKP KELPPIASGGKCGFLKSLEGQVSRDRADNEAFFYRENFAKNKDQLAQHLYRMFNAQVF NNELDVPITWSKLLRNTAGRCMNKRRLNQRSSVVELSVKVLTTADRLRCTLIHELCHA AAWVFNGEGGHGRVWKMWAQRANDKFPDLPQIKVCHNYSIEFKYTYKCLSCDKSSHAH SRSRKAEDLRCRICRGPITLFLNKKDKQGNTVSTPAGEAKGFAKFVKDNFQKHKRENM TAAQVMRVLSVEYAKQKGQPAGEAAASIASRVETLTLDD" misc_feature <458..1144 /gene="Gcna" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 2468..2926 /gene="Gcna" /note="SprT homologues; Region: SprT; smart00731" /db_xref="CDD:214794" polyA_site 3353 /gene="Gcna" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gataacgatg acagcaaaac gacgcgcaca aaatataaat tttacgaatt tgttgaaagc 61 atattctcaa agccgagttt aaggccaact ttaccgttat tcccccaacg acgcccccaa 121 aatggcggat cacaagtaca ggctcttcaa tgcagtcgat ccgagcaaac aggtggacca 181 gccaggagtg aaggtcaatc ctcgggagaa agtcgaagct gaagcagctg ccatgcgcgt 241 aaatgtgggt gctccggccg ccggcggagg caatctggat gacacggccc agaatctcga 301 tggttccgat tacatggacg ccctgcagct gagctgcagc caggatgcgg gcgaaatggc 361 cgatgtgggc gatgtggagc acctgtccgc cggcatcagc agtttgacag tgcgggagcc 421 accgcagcca agcaagcagg agatctccat ctgcatctcc tccaccacgg aggagaacgc 481 ttccgacaac gacgacgacg cctcctgcat caccatatcc gactccagtg aggacgagga 541 tgagcccctg ccccccgaca gcatggcagt gagtgataga accgccgacc aggaggccat 601 cccaccgccc atgctctcca ccgacaaggt gcagcgcatc gaggccttcc tgcgggatgt 661 gtccatggag cggcgcgaga tggagcggac tggccccctg acaccatcgc ccctctcgtc 721 caccaagcgg caatcccgat cccggctagc cgaggccgac acggagtcca tgtcgcccac 781 cgacgaggac tggcagccac cggtggacag cagcaggcga ctggcggaca acgagacgca 841 ggtggacacc atctgctcgg cggacgcgac tcggctggac agcagcaagc gcctggcgga 901 cgacgaaacg gaggccaata ccctgggatc agaggatctg gatctggagc atctggagcc 961 cagggacagc agcaagcgac tggcggacaa tgacaccgaa ctcaacaccc tgtgctccga 1021 caactcgacg ctccacgagg agcagcccgt gccggaggag tccatagaaa taccagagac 1081 cagcagtgag ggcgagccct cgccgcagaa acccagttcc ggctcctcgg cgtcggacga 1141 ggacgaccgt gaaaccgttc atgtgagcag cattaatatt tcggccaaga tcaacatcaa 1201 gatcagcatt cccaccatgg agtcgagttc ggcggaggac gagtatcctt ctcccagggc 1261 caccaagtcg ctgcccagct cggaggaggt gcagtgtgag aagcagcagc cgcagcagca 1321 ggaaaaatcc atgctgtcca cgggtgacgc ctccgaggat gagcagttcc tcacccaggc 1381 cgaaaagctg ctgaaccagc tgtatggcaa gtcctggcag acacccgacg tgatccgcac 1441 cctcaagcgc tccagtggca gcggcgggaa aacagctccc ttgcggccca ggaatatccc 1501 agcaactgcg gccaccaccg ccaaaaagaa gaagccacga gctccgccgc ccgtcgtcag 1561 gacagacgaa agtgtcctgg gcgatttcag cctgttcacc cgcgccctgc gcaccaatca 1621 gacgcctctg aactccacgc gcctgcctcc cctgcgagct gtccaaacgg agaggcgtcc 1681 gcggagccag cggcccgtga cacgaccgcg caccaaccac gtggacgagg accggtggcg 1741 gaagctcatt gactcggaca gcggcacaga cgcctccgac gacgaggatg cggacgccac 1801 gttcagcgac agcggctccg agagcgacag cgactcgggg agaaagcagg gccagcagaa 1861 gggcggcgac attacctacc tggacttgac caaggacgag gtagaggtca tcagcaatcc 1921 cgacgaggat tcacagtctc ccaagacgca tcgtcgcctg gatgacattc tgcgctcgtg 1981 ccgcgccagc gttaaagcca aactccccgc cacgcctgcg ccccaggcca ccacgcgccg 2041 gcagctcttc acaccgaacg tcggcttcga ggacgagacc gaggccaggg cgattgtgga 2101 caaggcactg gacctggaca tgctggacga gctggagagc gactacctgc cgggcacgcc 2161 cgtccacaag cgagtgcagg aggtcaggcg gaagctgggc atcgggctgc cagggcagac 2221 gacgccccag caaagcccca tcctcaagct gctcacccca aagacggcgc cgcccaaggc 2281 gcttggtccg cccaaaacta ccgccccacc gaaatccact gcccggaagg ccaagaagcc 2341 gaaggaactt cctcccatcg ccagcggcgg caagtgcggc ttcctcaagt ccctggaggg 2401 gcaggtgagc cgcgatcggg cggacaacga ggccttcttc taccgggaga acttcgccaa 2461 gaacaaggat cagctggccc agcatctgta caggatgttc aacgcccagg tgttcaacaa 2521 cgagctggat gtgcccatta cctggtccaa actgctgcgc aacacagccg ggcgctgcat 2581 gaacaagcgc agactcaacc agcgcagcag cgtggtggag ctgagcgtca aggtcctgac 2641 cacggcggac cgcctgcgct gcaccctgat ccacgaactg tgccacgccg ccgcctgggt 2701 cttcaacggc gagggcggcc acggacgcgt gtggaagatg tgggcccagc gggccaacga 2761 caagttcccc gacctgccgc agataaaggt ctgccacaac tacagcatcg agttcaagta 2821 cacctacaag tgcctgagct gcgacaaatc ttcgcacgct cactcccgat cgcgcaaggc 2881 ggaggacctg cgctgcagga tctgccgcgg acccatcacc ctgttcctca acaagaagga 2941 caagcaggga aacaccgtgt ccacgccggc gggcgaggcc aagggattcg ccaagttcgt 3001 caaggacaac ttccagaagc acaagcggga gaacatgacc gccgcccagg tgatgcgtgt 3061 cctcagcgtg gagtacgcca agcagaaggg tcagccggcg ggggaggcgg cggcgtcgat 3121 cgccagccga gtggagacgc tgacactgga cgactagcct caatcactgg gaaatctgat 3181 tatatatttg atcatttaat cagttgtcaa agtttccgtc tatagacgat atgtggacat 3241 tcatgtatat tttgttttat attattttgt tagtttttat tttttacttg accaaaaaac 3301 aaagtttcca caaaagttta aaatatgtaa ataaaatgta acggacattt gaa