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LOCUS XM_017151163 3416 bp mRNA linear INV 09-DEC-2024 (Gcna), transcript variant X1, mRNA. ACCESSION XM_017151163 VERSION XM_017151163.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151163.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3416 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3416 /gene="Gcna" /note="Germ cell nuclear acidic peptidase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108063890" CDS 122..3220 /gene="Gcna" /codon_start=1 /product="germ cell nuclear acidic protein isoform X1" /protein_id="XP_017006652.3" /db_xref="GeneID:108063890" /translation="MADHKYRLFNAVDPSKVKVPFNQKFANLTLSSHKKRQQVDQPGV KVNPREKVEAEAAAMRVNVGAPAAGGGNLDDTAQNLDGSDYMDALQLSCSQDAGEMAD VGDVEHLSAGISSLTVREPPQPSKQEISICISSTTEENASDNDDDASCITISDSSEDE DEPLPPDSMAVSDRTADQEAIPPPMLSTDKVQRIEAFLRDVSMERREMERTGPLTPSP LSSTKRQSRSRLAEADTESMSPTDEDWQPPVDSSRRLADNETQVDTICSADATRLDSS KRLADDETEANTLGSEDLDLEHLEPRDSSKRLADNDTELNTLCSDNSTLHEEQPVPEE SIEIPETSSEGEPSPQKPSSGSSASDEDDRETVHVSSINISAKINIKISIPTMESSSA EDEYPSPRATKSLPSSEEVQCEKQQPQQQEKSMLSTGDASEDEQFLTQAEKLLNQLYG KSWQTPDVIRTLKRSSGSGGKTAPLRPRNIPATAATTAKKKKPRAPPPVVRTDESVLG DFSLFTRALRTNQTPLNSTRLPPLRAVQTERRPRSQRPVTRPRTNHVDEDRWRKLIDS DSGTDASDDEDADATFSDSGSESDSDSGRKQGQQKGGDITYLDLTKDEVEVISNPDED SQSPKTHRRLDDILRSCRASVKAKLPATPAPQATTRRQLFTPNVGFEDETEARAIVDK ALDLDMLDELESDYLPGTPVHKRVQEVRRKLGIGLPGQTTPQQSPILKLLTPKTAPPK ALGPPKTTAPPKSTARKAKKPKELPPIASGGKCGFLKSLEGQVSRDRADNEAFFYREN FAKNKDQLAQHLYRMFNAQVFNNELDVPITWSKLLRNTAGRCMNKRRLNQRSSVVELS VKVLTTADRLRCTLIHELCHAAAWVFNGEGGHGRVWKMWAQRANDKFPDLPQIKVCHN YSIEFKYTYKCLSCDKSSHAHSRSRKAEDLRCRICRGPITLFLNKKDKQGNTVSTPAG EAKGFAKFVKDNFQKHKRENMTAAQVMRVLSVEYAKQKGQPAGEAAASIASRVETLTL DD" misc_feature <521..1207 /gene="Gcna" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 2531..2989 /gene="Gcna" /note="SprT homologues; Region: SprT; smart00731" /db_xref="CDD:214794" polyA_site 3416 /gene="Gcna" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gataacgatg acagcaaaac gacgcgcaca aaatataaat tttacgaatt tgttgaaagc 61 atattctcaa agccgagttt aaggccaact ttaccgttat tcccccaacg acgcccccaa 121 aatggcggat cacaagtaca ggctcttcaa tgcagtcgat ccgagcaaag taaaggttcc 181 gttcaatcag aaattcgcca atttgacgct atcctcccac aaaaaacgac agcaggtgga 241 ccagccagga gtgaaggtca atcctcggga gaaagtcgaa gctgaagcag ctgccatgcg 301 cgtaaatgtg ggtgctccgg ccgccggcgg aggcaatctg gatgacacgg cccagaatct 361 cgatggttcc gattacatgg acgccctgca gctgagctgc agccaggatg cgggcgaaat 421 ggccgatgtg ggcgatgtgg agcacctgtc cgccggcatc agcagtttga cagtgcggga 481 gccaccgcag ccaagcaagc aggagatctc catctgcatc tcctccacca cggaggagaa 541 cgcttccgac aacgacgacg acgcctcctg catcaccata tccgactcca gtgaggacga 601 ggatgagccc ctgccccccg acagcatggc agtgagtgat agaaccgccg accaggaggc 661 catcccaccg cccatgctct ccaccgacaa ggtgcagcgc atcgaggcct tcctgcggga 721 tgtgtccatg gagcggcgcg agatggagcg gactggcccc ctgacaccat cgcccctctc 781 gtccaccaag cggcaatccc gatcccggct agccgaggcc gacacggagt ccatgtcgcc 841 caccgacgag gactggcagc caccggtgga cagcagcagg cgactggcgg acaacgagac 901 gcaggtggac accatctgct cggcggacgc gactcggctg gacagcagca agcgcctggc 961 ggacgacgaa acggaggcca ataccctggg atcagaggat ctggatctgg agcatctgga 1021 gcccagggac agcagcaagc gactggcgga caatgacacc gaactcaaca ccctgtgctc 1081 cgacaactcg acgctccacg aggagcagcc cgtgccggag gagtccatag aaataccaga 1141 gaccagcagt gagggcgagc cctcgccgca gaaacccagt tccggctcct cggcgtcgga 1201 cgaggacgac cgtgaaaccg ttcatgtgag cagcattaat atttcggcca agatcaacat 1261 caagatcagc attcccacca tggagtcgag ttcggcggag gacgagtatc cttctcccag 1321 ggccaccaag tcgctgccca gctcggagga ggtgcagtgt gagaagcagc agccgcagca 1381 gcaggaaaaa tccatgctgt ccacgggtga cgcctccgag gatgagcagt tcctcaccca 1441 ggccgaaaag ctgctgaacc agctgtatgg caagtcctgg cagacacccg acgtgatccg 1501 caccctcaag cgctccagtg gcagcggcgg gaaaacagct cccttgcggc ccaggaatat 1561 cccagcaact gcggccacca ccgccaaaaa gaagaagcca cgagctccgc cgcccgtcgt 1621 caggacagac gaaagtgtcc tgggcgattt cagcctgttc acccgcgccc tgcgcaccaa 1681 tcagacgcct ctgaactcca cgcgcctgcc tcccctgcga gctgtccaaa cggagaggcg 1741 tccgcggagc cagcggcccg tgacacgacc gcgcaccaac cacgtggacg aggaccggtg 1801 gcggaagctc attgactcgg acagcggcac agacgcctcc gacgacgagg atgcggacgc 1861 cacgttcagc gacagcggct ccgagagcga cagcgactcg gggagaaagc agggccagca 1921 gaagggcggc gacattacct acctggactt gaccaaggac gaggtagagg tcatcagcaa 1981 tcccgacgag gattcacagt ctcccaagac gcatcgtcgc ctggatgaca ttctgcgctc 2041 gtgccgcgcc agcgttaaag ccaaactccc cgccacgcct gcgccccagg ccaccacgcg 2101 ccggcagctc ttcacaccga acgtcggctt cgaggacgag accgaggcca gggcgattgt 2161 ggacaaggca ctggacctgg acatgctgga cgagctggag agcgactacc tgccgggcac 2221 gcccgtccac aagcgagtgc aggaggtcag gcggaagctg ggcatcgggc tgccagggca 2281 gacgacgccc cagcaaagcc ccatcctcaa gctgctcacc ccaaagacgg cgccgcccaa 2341 ggcgcttggt ccgcccaaaa ctaccgcccc accgaaatcc actgcccgga aggccaagaa 2401 gccgaaggaa cttcctccca tcgccagcgg cggcaagtgc ggcttcctca agtccctgga 2461 ggggcaggtg agccgcgatc gggcggacaa cgaggccttc ttctaccggg agaacttcgc 2521 caagaacaag gatcagctgg cccagcatct gtacaggatg ttcaacgccc aggtgttcaa 2581 caacgagctg gatgtgccca ttacctggtc caaactgctg cgcaacacag ccgggcgctg 2641 catgaacaag cgcagactca accagcgcag cagcgtggtg gagctgagcg tcaaggtcct 2701 gaccacggcg gaccgcctgc gctgcaccct gatccacgaa ctgtgccacg ccgccgcctg 2761 ggtcttcaac ggcgagggcg gccacggacg cgtgtggaag atgtgggccc agcgggccaa 2821 cgacaagttc cccgacctgc cgcagataaa ggtctgccac aactacagca tcgagttcaa 2881 gtacacctac aagtgcctga gctgcgacaa atcttcgcac gctcactccc gatcgcgcaa 2941 ggcggaggac ctgcgctgca ggatctgccg cggacccatc accctgttcc tcaacaagaa 3001 ggacaagcag ggaaacaccg tgtccacgcc ggcgggcgag gccaagggat tcgccaagtt 3061 cgtcaaggac aacttccaga agcacaagcg ggagaacatg accgccgccc aggtgatgcg 3121 tgtcctcagc gtggagtacg ccaagcagaa gggtcagccg gcgggggagg cggcggcgtc 3181 gatcgccagc cgagtggaga cgctgacact ggacgactag cctcaatcac tgggaaatct 3241 gattatatat ttgatcattt aatcagttgt caaagtttcc gtctatagac gatatgtgga 3301 cattcatgta tattttgttt tatattattt tgttagtttt tattttttac ttgaccaaaa 3361 aacaaagttt ccacaaaagt ttaaaatatg taaataaaat gtaacggaca tttgaa