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LOCUS XM_017151142 7966 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017151142 VERSION XM_017151142.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151142.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7966 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7966 /gene="trr" /note="trithorax-related; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108063872" CDS 190..7143 /gene="trr" /codon_start=1 /product="histone-lysine N-methyltransferase trr" /protein_id="XP_017006631.3" /db_xref="GeneID:108063872" /translation="MNIPKVTTSLGAAEKAKPERVASVAAVGAVGGAAFTAVGLQKRS SGADDPSAAAEDATRKKAKTELLLGAPVAVPAPAPSLPAKASAPQQLLYQRAPGQQVK VQAKEEAQSEPDGASWEAREQQQQQQQQIIVCNFGPGSEMGAIKAEDADKQTFASFTK KEGASSSASSSSSTASVISIEPGGPGQEHADNPGKAEDLDYVLVPSSEGAGSQTGTTS TIILNANNGGGAGAVSAGGGTTTTILTQKPGHTNYLNFNTTATGSQTGQPTTTLLNRV NLHAKMKTTQLVVNAKKLSEVTQTTAKVSIGNKTISVPLLKPLMSAGGAATAGGATIV ESKQLLQPGGQVTAITGGGQQVQVHPHVHPHGHPHGHHNITKLIKRVPKNPGTIVSFS GLQIKPATTKIVATKVVSKKMSLQLQQHHQQQLQATSGGGLAPPTGSIVTITTTNPSQ TYAMVQEAVPHSEEDATAPRKITAYSENLQKMLSKGKETEEFAGLNSVVIKPLDKSAL NCPPSFNIFKQQQSVQSVQSAQTTTPDLATTSSSSAASSTVSVSAGTICINSPMMGSR PIISIQNKNISLVLSKTTMAQQKPKMITSQSALQMHHALVQESSADKTVSVASAGASS VQLKLTSASVTPAKLEVVKLEEIAGETKAVAKEAPGGNPAGEQERGEEIGTPEKRLNA STTMTLATTPTSTASNPSTPNPPASATPTATATPTATPTAINNQRSGAEDSNNALLKQ LLQNTGSSHNLSIPSAATTAPLSARKVINVRAPSMGMVSSLEAQLARPVIPPVPAGSS SSSGKSVATSTTTTTVASGGSGQSVATASVTPVTPLTAVAIATPGEPKLEQKSEAPVV VQNQNQNQNPPPPPPPPQQQMQPLQVKQTVQIVSKETSFISGPVASSKPPTEATAKPP VAELLPPPLPPPPYELATAPVSNVTISIATKQAAPKELQTKPKAVAMSLPMEQGEESL PEQAEMPPHPEQGVTATWSNSNHIEGGAATATKIPFKPSGEAQKRKLPMHPQLDEKQL EMASLPVTPTGQAAPEKVQLISAMGSYVKKSEAQTPQPIQAQSQGQVQMQAQMQAAMQ GQIPGQIPGQIPGQIANQMPAQMHLQVQHLHQQQAPSVPSVAMPGHHPLPHQQTHQQT HQQTHQLTHPQTHPPTMEPKAGDQRKRRKREVQKPRRTNLNAGAGGAGGAGAAGALKD LTGALPAGAMVQLAGMPPGAQYIQGAAPVISGGHGGQGGVALGGSSSPMLKKRVRKFS KVEEDHDAFTEKLLTHIRQMQPLQVLEPHLNRNFHFLIGSNEASASASAGGSPSSSGG GGAASAGGKLKGGARLPLSRHLEGLEDCDGAILGRFGRVRLPGIPSLYDSERFGGSGG LVGGSSRPPSPSVDAEKLLPLSSIQNDFYDQEFSTHMERNSRERLQRHIGAVKDCNLE TVDLVESEGVAAWAAFPRLTRYPGLILLNGNSRCHGRMSPVALPEDPLTMRVPVSPLL RSCGEELRKAQQLESLGSLASNNNNNNYQQKNQNVILALPASSSENIAGVLRDLANLL HLAPALTCKILEEKAGDKPEEQFPDRDQEKRRPPIAVSHGHLRKILDGRRKLCRSCGK VVPATGLRVPRHSVPALEEQLPRLAQLMDLLPRKAAAPPFVYFCDRACFAGFKWSGGK EEAASLLLQPAGGSTAAPSVSTGDSPTASGSISSALAETVVKQEPEDEADQAQPTANL PVQRKCIVKCFSADCFATDSPVKLEFADGAGGGGAGTAGTNNTVWETEASGLQLEDTR QCVFCNQRGDGQADGPSRLLNFDVDKWVHLNCALWSNGVYETVSGALMNFQTALQAGL NQACSACHQLGATIKCFKSRCNSLYHLPCAIREECVFYKNKSVHCSAHGHAPPGGGAA GAGGAGAPGSAALAENELSSLVVHRRVFVDRDENRQVATVMHYSELSNLLRVGNMTFL NVGQLLPHQLEAFHTPHYIYPIGYKVSRYYWCVLRPNRRCRYICSIAEAGCRPEFRIL VQDAGDREPEREFRDSSPSAVWQQILQPITRLRRAHKWLQLFPQHISGEDLFGLTEPA IVRILESLPGIETLTDYRFKYGRNPLLEFPLAINPSGAARTEPKQRQLLVWRKPHTQR TAGSCSTQRMANSAAIAGEVACPYSKQFVHSKSSQYKKMKQEWRNNVYLARSKIQGLG LYAARDIEKHTMIIEYIGEVIRTEVSEIREKQYESKNRGIYMFRLDEDRVVDATLSGG LARYINHSCNPNCVTEIVEVDRDVRIIIFAKRKIYRGEELSYDYKFDIEDESHKIPCA CGAPNCRKWMN" misc_feature 5545..5850 /gene="trr" /note="PHD finger superfamily; Region: PHD_SF; cl22851" /db_xref="CDD:473978" misc_feature order(5722..5724,5752..5763,5779..5781,5842..5844) /gene="trr" /note="histone H3 binding site [polypeptide binding]; other site" /db_xref="CDD:277136" misc_feature 6046..6201 /gene="trr" /note="F/Y-rich N-terminus; Region: FYRN; pfam05964" /db_xref="CDD:461787" misc_feature 6223..6492 /gene="trr" /note="FY-rich domain, C-terminal region; Region: FYRC; smart00542" /db_xref="CDD:197781" misc_feature 6679..7137 /gene="trr" /note="SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C), 2D (KMT2D) and similar proteins; Region: SET_KMT2C_2D; cd19171" /db_xref="CDD:380948" misc_feature order(6682..6690,6694..6699,6703..6705,6787..6789, 6802..6807,6811..6825,6829..6834,6838..6849,6877..6879, 6883..6891,6907..6909,6916..6924,6928..6936,6940..6942, 6976..6978,6982..6984,6991..6993,7030..7032,7057..7059, 7063..7071) /gene="trr" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:380948" misc_feature order(6745..6756,6805..6807,6838..6840,6847..6849, 6877..6891,6907..6909,6940..6954,6976..6978,6982..6984, 7057..7059,7063..7071,7099..7110,7135..7137) /gene="trr" /note="active site" /db_xref="CDD:380948" misc_feature order(6745..6756,6877..6882,6940..6954,7063..7065, 7099..7110,7135..7137) /gene="trr" /note="SAM binding site; other site" /db_xref="CDD:380948" misc_feature order(6805..6807,6838..6840,6847..6849,6877..6879, 6883..6891,6907..6909,6940..6942,6976..6978,6982..6984, 7057..7059,7063..7071) /gene="trr" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:380948" misc_feature order(6958..6960,7102..7104,7108..7110,7123..7125) /gene="trr" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:380948" polyA_site 7966 /gene="trr" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cggctctttt gccagctcta ctgcatacac gaaaataaaa atttttttga caaaatcgtg 61 catgttttcg ctggctaaaa aaaagaagca ggccgcgcga gccctagcta gctagaccgc 121 cgcccctccc gtcctacgaa gcgcagcgca tcgcatcccg cgtccagcgt ttccacttgt 181 gtgtttgtta tgaatatacc gaaggtgaca acatcgcttg gtgccgccga aaaggcgaaa 241 cccgaacgtg tagcatccgt ggcggccgtc ggtgccgtcg gaggcgccgc cttcacagcg 301 gtcggcctgc agaagcgcag cagcggcgcc gacgacccct ccgctgcggc ggaggatgcc 361 acgcgcaaga aggccaagac ggagctgctc ctcggggcgc cagtggccgt gccagcgccc 421 gcgcccagtt tgcccgccaa ggcgtctgct ccgcagcagc tgctctacca gcgggctccc 481 ggccagcagg tcaaggtgca ggccaaggag gaggcccagt cggagcccga cggcgcctcc 541 tgggaagccc gcgagcagca gcaacagcag cagcagcaga tcatagtgtg caactttggc 601 cccggcagcg agatgggcgc catcaaggcg gaggatgccg acaagcagac cttcgccagc 661 tttaccaaaa aggagggcgc ctcctcgtcg gcctcgtcct cctcctccac cgcctccgtc 721 atctccatcg agcccggcgg ccctgggcag gagcacgccg acaatcccgg caaggcggag 781 gacctcgact acgtgctggt gccctcctcc gagggagcgg gcagccaaac gggcaccacc 841 tccaccatca tcctgaacgc caacaacgga ggaggagcag gagcagtcag tgccggcggc 901 ggcaccacca ccaccatcct cacccagaag cccggccaca ccaactactt gaacttcaac 961 accacggcca ccggcagcca gaccggccag ccgaccacca cgctgctgaa ccgggtgaac 1021 ctgcacgcca agatgaagac cacccagctg gtggtgaacg ccaagaagct gtcggaggtc 1081 acgcagacca cggccaaggt gtcgatcggc aacaagacga tctcggtgcc gctgctcaag 1141 cccctgatga gcgccggcgg agcggccacg gccggcgggg cgacgatcgt ggagagcaag 1201 cagctgctgc agccgggcgg ccaggtgacg gccatcaccg gcggcggcca gcaggtgcag 1261 gtccacccgc acgtccaccc gcacggccat ccgcacggcc accacaacat caccaagctg 1321 atcaagcgcg tgcccaagaa ccccggcacc atcgtctcct tctcggggct gcagatcaag 1381 ccggcgacca cgaagatcgt ggccaccaag gtggtcagca agaagatgtc cctgcagctg 1441 cagcagcacc accagcagca gctgcaggcg accagcggcg gcggcttggc cccgcccacg 1501 ggcagcatag tgaccatcac gaccaccaat cccagccaga cctacgcgat ggtccaggag 1561 gcggtcccgc actcggagga ggatgcgacg gcgccgcgca agatcaccgc ctactcggag 1621 aacctgcaga agatgctcag caagggcaag gagaccgagg agttcgccgg cctcaacagc 1681 gtggtgatca agccgctgga caagagcgcg ctcaactgcc cgcccagctt caacatcttc 1741 aagcagcagc agtctgtcca gtctgtccag tctgcccaaa cgactacgcc cgatctggcc 1801 accacctcct cctcctccgc cgcctcctcc accgtctccg tgtccgcggg caccatctgc 1861 atcaacagtc ccatgatggg ctcgcggccc atcatctcca tccagaacaa gaacatctcc 1921 ctggtgctct ccaagacgac gatggcccag cagaagccca agatgatcac cagccagtcg 1981 gcgctgcaga tgcaccatgc cctggtccag gaatccagtg cggacaagac ggtgtcggtg 2041 gcctccgcgg gagcctcttc ggtgcagctc aagctgacga gcgccagcgt gacgcccgcg 2101 aagctcgagg tggtcaagct ggaggagatt gccggcgaaa cgaaggcggt ggccaaggag 2161 gcacccggtg gtaatccggc gggcgaacag gagcgcggcg aggagatcgg cacaccggag 2221 aagcgtttga acgccagcac caccatgacg ctggccacca ctcccacctc caccgcctcg 2281 aatcccagca caccgaatcc cccggccagt gccacgccca ctgccactgc cacgcccact 2341 gccactccca cagcgatcaa caatcagcgc tcgggggcgg aggattcgaa caacgcgctg 2401 ctcaagcagc tgctccagaa caccggcagc agccacaacc tcagcatccc ctccgccgcc 2461 acgacggcgc ccctctccgc ccgcaaggtg atcaacgtgc gggcgcccag catgggcatg 2521 gtcagcagcc tggaggcgca gctggcgcgt ccggtgattc cgccggtgcc ggcgggcagc 2581 agcagcagca gcggcaagtc cgtggccacc tccaccacga ccacaacggt ggccagcgga 2641 ggaagtggcc agtcggtggc caccgcctcg gttactccgg ttactccgct cacggctgtg 2701 gcaatcgcca cgcctggaga accaaagctg gagcagaaga gcgaagcgcc agtggtggtt 2761 cagaaccaga atcagaatca gaatccacca ccaccacctc ctcctccgca gcaacagatg 2821 cagcccctcc aagtcaagca gaccgtgcag attgtgtcca aggaaacgtc gttcatctcg 2881 ggccccgtgg catcgagtaa accgccgacg gaggccaccg ccaagccgcc agttgcggag 2941 ctgctgcctc cgccgctgcc tccgccgccc tacgaactgg ccaccgcccc cgtctcgaac 3001 gtgaccatct ccatagccac caagcaggcg gcgcccaagg agctgcagac gaagcccaag 3061 gcggtggcca tgtcgctgcc catggagcag ggcgaggagt cgctgccgga gcaggcggag 3121 atgcctcccc atccggagca gggagtaaca gcaacctgga gcaacagcaa ccacatcgag 3181 ggaggagcag ccacagccac gaagattccc ttcaagcctt cgggcgaggc ccagaagcgc 3241 aagctgccca tgcatccgca gctggacgag aagcagctgg agatggcctc gctgccggtc 3301 accccaacgg gacaagctgc tccggagaag gtgcagctca tctcggcgat gggcagctat 3361 gtgaagaagt ccgaggcaca gaccccacaa cccattcaag cccaaagcca ggggcaggtg 3421 cagatgcagg cgcagatgca ggcggccatg caggggcaga tcccgggaca gattcctgga 3481 cagatccctg gacagatcgc gaaccagatg ccggcacaaa tgcatctgca ggtgcagcat 3541 cttcaccagc agcaggctcc ctcggttccc tcggtggcaa tgcctggaca tcatcccctt 3601 ccccaccagc aaacccatca acagacccat cagcaaaccc atcagctaac ccatccccaa 3661 acccatcctc ccaccatgga gcccaaggcg ggtgaccaaa gaaagcgccg caaacgcgag 3721 gttcagaagc cgcggcgcac gaatctgaat gccggagcgg gaggagctgg aggagcggga 3781 gcagcgggag ctctcaagga tctgacgggc gcactgccgg caggagcaat ggtccagttg 3841 gcgggaatgc cgccgggagc gcagtacatc cagggcgcag ctccagtgat cagcggcgga 3901 cacggaggac aaggaggcgt tgcgctggga ggcagctcct cgcccatgct caagaagcgc 3961 gtgcgcaagt tctccaaggt ggaggaggat cacgatgcat ttaccgaaaa gctgcttacg 4021 cacatccgcc agatgcagcc gctccaggtg ctggaaccgc atctcaaccg caactttcac 4081 tttctcatcg ggagcaacga ggcctccgcc tccgcttccg ccggtggttc gccctcatct 4141 tctggaggag gaggagcagc atcagctggt ggcaaactga agggaggagc gaggctgccg 4201 ctgagcaggc acctggaggg tctggaggac tgcgacggcg ccatcctcgg gcgctttgga 4261 cgcgtgcgtc tgccggggat tccctcgctg tacgacagcg agcgcttcgg cggcagcgga 4321 ggtctggtgg gcggatcatc gcgcccaccc tcgccctccg tcgatgccga gaagctgctg 4381 ccgctgtcca gcatccagaa cgacttctac gaccaggagt tctccacgca catggagcgc 4441 aattcgcggg agcgcctgca gcggcacatc ggcgccgtca aggattgcaa cctggagacc 4501 gtcgatctgg tcgagagcga gggcgtggcc gcgtgggcgg ccttcccgcg gctcacccgc 4561 tacccgggat tgatcctgct caacgggaac agccgctgcc acggacgcat gtcgccggtg 4621 gcgctgccgg aggacccgct gaccatgcgg gtgcccgtgt cgccgctgct gcgatcctgc 4681 ggcgaggagc tgcgcaaggc ccagcagctg gagtccctgg gctccttggc cagcaacaac 4741 aacaacaaca actaccagca gaagaaccag aacgtgatac tcgcactgcc cgcctcctcc 4801 tcggagaaca tagccggcgt gctgcgggat ctggccaacc tgctgcacct ggcgcccgcg 4861 ctcacgtgca agatcctcga ggagaaggcg ggcgacaagc cggaggagca gttcccggac 4921 cgtgaccagg agaagcgccg cccgccgatc gccgtgagcc acggccacct gcgcaagatc 4981 ctcgacgggc gccggaagct gtgccgcagc tgcgggaagg tggtccccgc caccgggctg 5041 cgtgttccgc ggcacagtgt gcccgcgctg gaggagcagc tgccccggct ggcccagctg 5101 atggacctgc tgccccgcaa ggcggctgcc ccgccgttcg tctacttctg cgaccgcgcc 5161 tgctttgcgg gattcaagtg gagcggcggc aaggaggagg cggccagtct gctgctccag 5221 ccggcgggag gttccactgc agcgccttct gtgtccaccg gtgactcccc caccgccagc 5281 ggctccatct cctcagcact cgcggaaacg gtggtcaaac aggagccgga ggacgaggcg 5341 gaccaggcgc agcccaccgc caatctcccc gtgcagcgca agtgcatcgt caagtgcttc 5401 agtgccgact gctttgccac ggactcgccc gtcaagctgg agtttgcaga cggagcagga 5461 ggaggaggag cgggaacagc gggaaccaac aacactgtct gggaaacgga ggccagtgga 5521 ctgcagctgg aggacaccag gcagtgcgtg ttctgcaatc agcggggcga cggccaggcg 5581 gacggaccct cgcgactgct caactttgat gtggataaat gggtgcacct caactgcgcc 5641 ctgtggtcca acggcgtcta cgagaccgtc tccggggccc tgatgaactt ccagactgcc 5701 ctgcaggcgg gtctcaacca ggcgtgcagc gcctgccacc aactgggcgc caccatcaag 5761 tgcttcaagt cgcgctgcaa cagcctgtac cacctgccgt gcgccattcg cgaggagtgc 5821 gtcttctaca agaacaagtc ggtgcactgc agcgcccacg ggcatgctcc accaggcgga 5881 ggagcagcag gagcaggagg agcaggtgcg ccaggctctg ctgctctggc ggagaacgaa 5941 ctgagctcgc tggtcgtcca ccgccgcgtg ttcgtggatc gcgacgagaa ccgccaggtg 6001 gccactgtga tgcactactc ggagctgagc aacctgctgc gcgtgggcaa catgacgttc 6061 ctgaacgtgg gccagctgct gccgcaccag ctggaggcct tccacacgcc gcactacatc 6121 taccccatcg gctacaaggt gagtcgctac tactggtgcg tgctgcgtcc gaatcgcagg 6181 tgccgctaca tctgcagcat cgccgaggcc ggctgcaggc ccgagttccg catcctggtg 6241 caggacgccg gcgacaggga gccggagcgc gagttccgcg acagctcgcc ctcggcggtg 6301 tggcagcaga tcctgcagcc gatcacgcgg ctgcgcaggg cgcacaagtg gctgcagctc 6361 ttcccgcagc acatcagcgg cgaggacctc ttcgggctca cggagccggc catcgtgcgc 6421 atcctggaga gcctgccggg catcgagacg ctcaccgact accgcttcaa gtacggccgc 6481 aacccgctgc tcgagttccc gctggccatc aacccgtcgg gggccgcgcg caccgagccc 6541 aagcagcgcc agctgctcgt ctggcgcaag ccgcacaccc agcgcaccgc cggcagctgc 6601 agcacccagc ggatggccaa ctcggcggcc atcgccggcg aggtggcctg tccctacagc 6661 aagcagttcg tccactcgaa gagctcccag tacaagaaga tgaagcagga gtggcgcaac 6721 aacgtgtacc tggcgaggtc caagatccag ggactgggcc tgtatgccgc ccgggacatt 6781 gagaagcaca ccatgatcat cgagtacatt ggcgaggtca tccgcaccga ggtctccgag 6841 atacgggaga agcagtacga gtccaagaac cgcggcatct acatgttccg gctggacgag 6901 gaccgcgtgg tggacgccac tctgagcggt ggcctggcgc gctacatcaa ccactcgtgc 6961 aatcccaatt gtgtgaccga gatcgtggag gtcgatcgcg acgtgcggat catcatattc 7021 gccaagcgga agatctaccg cggcgaggag ctgtcctacg actacaagtt cgacatcgag 7081 gacgagtcgc acaagatacc gtgcgcctgc ggggcgccca actgccgcaa gtggatgaac 7141 tagagtcggg atccgcctcc tccgcctacg aaggaccaaa ggaagcgcaa gaggcggcga 7201 cgcgcgcgcc gctcccagtg aacaggaata ggaattgttg tatctgatca aatagataga 7261 ttcgctaggc agataagcag atagcagata gcagataaca gataagcaga taggcagtat 7321 agaccgtgta catatataca attatattat gctatatgcg agcatagaac cttgtaagtt 7381 atgtatatgt gcccactgta gctaattcgt atcccatata catatatcgc cgtaagtgga 7441 aagtggagca agtggagagt gtttcatagt ttcaattgaa tgattgctat cgtttctata 7501 tagagagaat ataaatataa atgttaatgc taggacatga ccacgccccc tgtaatgtat 7561 gtacatctga cccctgacct ttgacccctg agcttcttat ttttatattt ttttttagca 7621 ccatctccac atccacagcc gatggaaaac ccaaaaactt gactttatgc gtgtgtgcct 7681 tcccctctgt ttaccattta ccatttacca tttaccatta cactactatt atcatagtta 7741 tagtggctat ctttcaatat tcgcatactt tgcatgcaaa catgccccac gtgcaacatg 7801 tgcaaccttc tttgaatata tacacttgat aaggatacaa acacctactc ttattttatt 7861 ttttttaaat agttttgcaa tacctttaag tacattaacc aactccgagc aacgtgtatt 7921 tttcatcccc ttactagtta agtaaatttt atgccaccac atttta