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LOCUS XM_017151128 3221 bp mRNA linear INV 09-DEC-2024 variant X3, mRNA. ACCESSION XM_017151128 VERSION XM_017151128.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151128.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3221 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3221 /gene="arm" /note="armadillo; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:108063862" CDS 179..2710 /gene="arm" /codon_start=1 /product="armadillo segment polarity protein isoform X1" /protein_id="XP_017006617.1" /db_xref="GeneID:108063862" /translation="MSYMPAQNRTMSHNNQYNPPDLPPMVSAKEQTLMWQQNSYLGDS GIHSGAVTQVPSLSGKEDEEMEGDPLMFDLDTGFPQNFTQDQVDDMNQQLSQTRSQRV RAAMFPETLEEGIEIPSTQFDPQQPTAVQRLSEPSQMLKHAVVNLINYQDDAELATRA IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVRAISNSNDLES TKAAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQDG SKMAVRLAGGLQKMVTLLQRNNVKFLAIVTDCLQILAYGNQESKLIILASGGPNELVR IMRSYDYEKLLWTTSRVLKVLSVCSSNKPAIVDAGGMQALAMHLGNMSPRLVQNCLWT LRNLSDAATKVEGLEALLQSLVQVLGSTDVNVVTCAAGILSNLTCNNQRNKATVCQVG GVDALVRTIINAGDREEITEPAVCALRHLTSRHVDSELAQNAVRLNYGLSVIVKLLHP PSRWPLIKAVIGLIRNLALCPANHAPLREHGAIHHLVRLLMRAFQDTERQRSSIATTG SQQPSAYADGVRMEEIVEGTVGALHILARESHNRALIRQQSVIPIFVRLLFNEIENIQ RVAAGVLCELAADKEGAEIIEQEGATGPLTDLLHSRNEGVATYAAAVLFRMSEDKPQD YKKRLSIELTNSLLREDNNIWANADLGMGPDLQDMLGPEEAYEGLYGQGPPSVHSSHG GRAFHQQGYDTLPIDSMQGLEISSPVGGGGAGGAAGNGGAVGGAGGGGGNIGPIPPSG APTSPYSMDMDVGEIDAGALNFDLDAMPTPPNDNNNLAAWYDTDC" misc_feature 431..655 /gene="arm" /note="alpha-catenin binding domain found in Drosophila melanogaster armadillo segment polarity protein (dArm) and similar proteins; Region: CTNNAbd_dArm; cd21726" /db_xref="CDD:439243" misc_feature order(449..460,470..475,479..487,494..499,506..508, 560..568,572..577,584..589,596..598,605..631) /gene="arm" /note="putative CNTTA binding site [polypeptide binding]; other site" /db_xref="CDD:439243" misc_feature <626..>1120 /gene="arm" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 659..736 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 755..871 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 890..988 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature order(959..961,971..973,983..985,1085..1087,1097..1099, 1109..1111,1214..1216,1226..1228,1238..1240) /gene="arm" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293788" misc_feature 1010..1120 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1136..1243 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1259..1372 /gene="arm" /note="Armadillo/beta-catenin-like repeat; Region: Arm; pfam00514" /db_xref="CDD:425727" misc_feature 1262..1369 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1406..1483 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature order(1454..1456,1466..1468,1478..1480,1586..1588, 1598..1600,1610..1612,1724..1726,1736..1738,1748..1750) /gene="arm" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293788" misc_feature 1493..1621 /gene="arm" /note="Armadillo/beta-catenin-like repeat; Region: Arm; pfam00514" /db_xref="CDD:425727" misc_feature 1505..1621 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1646..1753 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature order(1928..1930,1940..1942,1952..1954,2051..2053, 2063..2065,2075..2077,2174..2176,2186..2188,2198..2200) /gene="arm" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293788" misc_feature 1967..2086 /gene="arm" /note="Armadillo/beta-catenin-like repeat; Region: Arm; pfam00514" /db_xref="CDD:425727" misc_feature 1976..2086 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 2099..2203 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" polyA_site 3221 /gene="arm" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 attctgttcc gttttaacga gcgtgctggt cggtcgcatt ttccgctgcg ccttttccag 61 aagctgcgag tgaagcacaa ttattttggt ttttctttga gtgcatcaga tttgaaaaag 121 tgccaaacat agtaattaaa taactcaagg tgtggtgtaa agcgccttaa tcaccaagat 181 gagttacatg ccagcccaga atcgtaccat gtcgcataat aatcaataca atccgccgga 241 tctcccgccg atggtgtccg ccaaggagca gaccctcatg tggcagcaga actcgtatct 301 gggcgactcc ggcatccact cgggggccgt gacccaggtg ccgtcgctgt ccggcaagga 361 ggacgaggag atggaggggg atcccctgat gttcgacctg gacaccgggt tcccgcagaa 421 ctttacgcag gaccaggtgg acgacatgaa ccagcagctg agccagacgc gctcccaacg 481 cgtccgggct gccatgttcc cggagacgct ggaggagggc atcgagattc cctccaccca 541 gttcgatccc cagcagccga cggcggtgca gcgtctctcg gagccgtcgc agatgctgaa 601 gcacgcggtg gtgaatctga tcaactacca ggacgacgcc gagctggcca ccagggccat 661 tccggagctg atcaagctgc tgaacgacga ggaccaggtg gtcgtctccc aggcggccat 721 gatggtccac cagctgtcca agaaggaggc ctcgcgccac gccatcatga acagccccca 781 gatggtggcc gccctggtgc gcgccatctc caacagcaac gatctggaga gcaccaaggc 841 cgcggtgggc acgctgcaca acttgtcgca ccatcgccag ggcctcctgg ccatcttcaa 901 gagcggcgga atcccggcac tcgtcaagct gctctcctcg ccggtggaga gtgtgctctt 961 ctacgcaata accacgctgc acaacctgct gctccaccag gacggctcca agatggccgt 1021 acgcctggcc ggcggcctcc agaagatggt cacgctgctg cagaggaaca acgtcaagtt 1081 cctggccatc gtcaccgatt gcctgcagat tctggcctac ggcaaccagg agagcaagct 1141 cataatcctc gcctccggcg ggccgaacga gctggtgcgc atcatgcgct cctacgacta 1201 cgagaagctg ctgtggacca cctcgcgggt gctcaaggtg ctgtccgtct gctccagcaa 1261 caagccggcc atcgtggacg ccggcggcat gcaggcgctg gccatgcacc tgggcaacat 1321 gtcgccgcgc ctcgtgcaga actgtctgtg gacactgcgc aacctgtccg acgcggccac 1381 caaggtggag ggtctcgagg ccctgctcca gtcgctcgtc caggtcctgg gctccaccga 1441 tgtcaacgtg gtcacctgtg ccgccggcat cctctcgaat ctgacgtgca acaatcagcg 1501 caacaaggcc accgtctgcc aggtgggcgg cgtggacgcc ctcgtccgca ccatcatcaa 1561 tgccggggat cgcgaggaga tcaccgagcc ggccgtttgc gccctgcgcc acctgacctc 1621 gcgtcacgtg gactcggagc tggcccagaa tgccgtgcgt ctcaactacg ggctgtcggt 1681 gattgtgaag ctgctgcatc caccgtcccg ctggccgttg atcaaggccg tcattgggct 1741 catacgcaac ttggccctct gtccggccaa ccacgccccg ttgcgggagc acggggccat 1801 ccatcacctg gtgcggctgc taatgcgcgc cttccaggac acagagaggc aacgctcctc 1861 gattgccacc acgggctccc agcagccgtc tgcctacgcc gacggcgtgc gcatggagga 1921 gattgtcgag ggcacggtgg gggccctgca tatcctggcc cgtgagtccc acaaccgggc 1981 gctcattcgc cagcagtcgg tgataccgat ctttgtgcgt ttgctgttca acgaaatcga 2041 gaatattcag cgcgtggctg ctggggttct ttgtgagctg gccgccgaca aggagggcgc 2101 cgagattatc gagcaggagg gcgccaccgg gccgctgacc gacctgctgc actcgcgcaa 2161 cgagggcgtg gccacgtacg ctgccgccgt gctcttccgc atgagcgagg acaagccgca 2221 ggactacaag aagcgcctgt ccatcgagct gaccaactcg ctgctgcgcg aggacaacaa 2281 catttgggcc aacgccgacc tgggcatggg tcccgatctg caggatatgc ttggaccaga 2341 agaagcatat gaaggcctgt acggacaagg tccgcccagc gtgcacagtt cgcacggagg 2401 tcgcgcattc catcagcaag gatatgatac tctaccaata gattcgatgc agggtctgga 2461 gatcagcagc ccggtgggcg gcggcggcgc tggcggtgct gccggcaatg gtggagcggt 2521 gggcggagct ggcggcggcg gcggcaacat cggccccatc ccgcccagcg gcgcacccac 2581 atcaccctac tccatggaca tggatgtcgg cgagattgat gccggtgcat tgaactttga 2641 tttggacgcc atgccgacgc cacccaatga caacaacaat ctggctgcct ggtacgacac 2701 cgactgctag acgacgatga cgaggagcga gcgaaagagc cgagctaagg gtaagggtcg 2761 aggagcatca atccattcga ccccaaaaac gagataacac aaaacacacg agtcccccgt 2821 cccagcaata tagccctttt ccactaggac gtggagatgc agatggagat ggagcaatca 2881 ctgatgaccg atcaccgata taccgatatt gactagatca acggagagtg ttgattttac 2941 ttgacaaaga cgaggaagga agataggatg ctgcggcagg aagagcgaga cgaaggcaat 3001 ccgaaggtcc gtgtccgtgg aagaaggcta ttgttcacac acccctcgac aaacatacac 3061 acccacacgg gcatactggc atacatgaat aatattatat attaattata atgcgaacgc 3121 agcggcataa aacatattat atgatgcatt acatattatc cacgtaaacg aaatggaaaa 3181 ttaaacaaat gtttgcaata gaactcgtac atttcccttc a