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LOCUS XM_017151127 3224 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_017151127 VERSION XM_017151127.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151127.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3224 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3224 /gene="arm" /note="armadillo; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:108063862" CDS 182..2713 /gene="arm" /codon_start=1 /product="armadillo segment polarity protein isoform X1" /protein_id="XP_017006616.1" /db_xref="GeneID:108063862" /translation="MSYMPAQNRTMSHNNQYNPPDLPPMVSAKEQTLMWQQNSYLGDS GIHSGAVTQVPSLSGKEDEEMEGDPLMFDLDTGFPQNFTQDQVDDMNQQLSQTRSQRV RAAMFPETLEEGIEIPSTQFDPQQPTAVQRLSEPSQMLKHAVVNLINYQDDAELATRA IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVRAISNSNDLES TKAAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQDG SKMAVRLAGGLQKMVTLLQRNNVKFLAIVTDCLQILAYGNQESKLIILASGGPNELVR IMRSYDYEKLLWTTSRVLKVLSVCSSNKPAIVDAGGMQALAMHLGNMSPRLVQNCLWT LRNLSDAATKVEGLEALLQSLVQVLGSTDVNVVTCAAGILSNLTCNNQRNKATVCQVG GVDALVRTIINAGDREEITEPAVCALRHLTSRHVDSELAQNAVRLNYGLSVIVKLLHP PSRWPLIKAVIGLIRNLALCPANHAPLREHGAIHHLVRLLMRAFQDTERQRSSIATTG SQQPSAYADGVRMEEIVEGTVGALHILARESHNRALIRQQSVIPIFVRLLFNEIENIQ RVAAGVLCELAADKEGAEIIEQEGATGPLTDLLHSRNEGVATYAAAVLFRMSEDKPQD YKKRLSIELTNSLLREDNNIWANADLGMGPDLQDMLGPEEAYEGLYGQGPPSVHSSHG GRAFHQQGYDTLPIDSMQGLEISSPVGGGGAGGAAGNGGAVGGAGGGGGNIGPIPPSG APTSPYSMDMDVGEIDAGALNFDLDAMPTPPNDNNNLAAWYDTDC" misc_feature 434..658 /gene="arm" /note="alpha-catenin binding domain found in Drosophila melanogaster armadillo segment polarity protein (dArm) and similar proteins; Region: CTNNAbd_dArm; cd21726" /db_xref="CDD:439243" misc_feature order(452..463,473..478,482..490,497..502,509..511, 563..571,575..580,587..592,599..601,608..634) /gene="arm" /note="putative CNTTA binding site [polypeptide binding]; other site" /db_xref="CDD:439243" misc_feature <629..>1123 /gene="arm" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 662..739 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 758..874 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 893..991 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature order(962..964,974..976,986..988,1088..1090,1100..1102, 1112..1114,1217..1219,1229..1231,1241..1243) /gene="arm" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293788" misc_feature 1013..1123 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1139..1246 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1262..1375 /gene="arm" /note="Armadillo/beta-catenin-like repeat; Region: Arm; pfam00514" /db_xref="CDD:425727" misc_feature 1265..1372 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1409..1486 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature order(1457..1459,1469..1471,1481..1483,1589..1591, 1601..1603,1613..1615,1727..1729,1739..1741,1751..1753) /gene="arm" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293788" misc_feature 1496..1624 /gene="arm" /note="Armadillo/beta-catenin-like repeat; Region: Arm; pfam00514" /db_xref="CDD:425727" misc_feature 1508..1624 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1649..1756 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature order(1931..1933,1943..1945,1955..1957,2054..2056, 2066..2068,2078..2080,2177..2179,2189..2191,2201..2203) /gene="arm" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293788" misc_feature 1970..2089 /gene="arm" /note="Armadillo/beta-catenin-like repeat; Region: Arm; pfam00514" /db_xref="CDD:425727" misc_feature 1979..2089 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 2102..2206 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" polyA_site 3224 /gene="arm" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 attccacgac ctatcgacta tcgcccatcg ctagttggtc tctgctttgt cgtatacagt 61 ttttttcgag cgagttcacc gttaatttgt gtcccagtgc gttttaaaca aataaatcct 121 gctctaaggc agacctagat tacttggacg cggtgtggtg taaagcgcct taatcaccaa 181 gatgagttac atgccagccc agaatcgtac catgtcgcat aataatcaat acaatccgcc 241 ggatctcccg ccgatggtgt ccgccaagga gcagaccctc atgtggcagc agaactcgta 301 tctgggcgac tccggcatcc actcgggggc cgtgacccag gtgccgtcgc tgtccggcaa 361 ggaggacgag gagatggagg gggatcccct gatgttcgac ctggacaccg ggttcccgca 421 gaactttacg caggaccagg tggacgacat gaaccagcag ctgagccaga cgcgctccca 481 acgcgtccgg gctgccatgt tcccggagac gctggaggag ggcatcgaga ttccctccac 541 ccagttcgat ccccagcagc cgacggcggt gcagcgtctc tcggagccgt cgcagatgct 601 gaagcacgcg gtggtgaatc tgatcaacta ccaggacgac gccgagctgg ccaccagggc 661 cattccggag ctgatcaagc tgctgaacga cgaggaccag gtggtcgtct cccaggcggc 721 catgatggtc caccagctgt ccaagaagga ggcctcgcgc cacgccatca tgaacagccc 781 ccagatggtg gccgccctgg tgcgcgccat ctccaacagc aacgatctgg agagcaccaa 841 ggccgcggtg ggcacgctgc acaacttgtc gcaccatcgc cagggcctcc tggccatctt 901 caagagcggc ggaatcccgg cactcgtcaa gctgctctcc tcgccggtgg agagtgtgct 961 cttctacgca ataaccacgc tgcacaacct gctgctccac caggacggct ccaagatggc 1021 cgtacgcctg gccggcggcc tccagaagat ggtcacgctg ctgcagagga acaacgtcaa 1081 gttcctggcc atcgtcaccg attgcctgca gattctggcc tacggcaacc aggagagcaa 1141 gctcataatc ctcgcctccg gcgggccgaa cgagctggtg cgcatcatgc gctcctacga 1201 ctacgagaag ctgctgtgga ccacctcgcg ggtgctcaag gtgctgtccg tctgctccag 1261 caacaagccg gccatcgtgg acgccggcgg catgcaggcg ctggccatgc acctgggcaa 1321 catgtcgccg cgcctcgtgc agaactgtct gtggacactg cgcaacctgt ccgacgcggc 1381 caccaaggtg gagggtctcg aggccctgct ccagtcgctc gtccaggtcc tgggctccac 1441 cgatgtcaac gtggtcacct gtgccgccgg catcctctcg aatctgacgt gcaacaatca 1501 gcgcaacaag gccaccgtct gccaggtggg cggcgtggac gccctcgtcc gcaccatcat 1561 caatgccggg gatcgcgagg agatcaccga gccggccgtt tgcgccctgc gccacctgac 1621 ctcgcgtcac gtggactcgg agctggccca gaatgccgtg cgtctcaact acgggctgtc 1681 ggtgattgtg aagctgctgc atccaccgtc ccgctggccg ttgatcaagg ccgtcattgg 1741 gctcatacgc aacttggccc tctgtccggc caaccacgcc ccgttgcggg agcacggggc 1801 catccatcac ctggtgcggc tgctaatgcg cgccttccag gacacagaga ggcaacgctc 1861 ctcgattgcc accacgggct cccagcagcc gtctgcctac gccgacggcg tgcgcatgga 1921 ggagattgtc gagggcacgg tgggggccct gcatatcctg gcccgtgagt cccacaaccg 1981 ggcgctcatt cgccagcagt cggtgatacc gatctttgtg cgtttgctgt tcaacgaaat 2041 cgagaatatt cagcgcgtgg ctgctggggt tctttgtgag ctggccgccg acaaggaggg 2101 cgccgagatt atcgagcagg agggcgccac cgggccgctg accgacctgc tgcactcgcg 2161 caacgagggc gtggccacgt acgctgccgc cgtgctcttc cgcatgagcg aggacaagcc 2221 gcaggactac aagaagcgcc tgtccatcga gctgaccaac tcgctgctgc gcgaggacaa 2281 caacatttgg gccaacgccg acctgggcat gggtcccgat ctgcaggata tgcttggacc 2341 agaagaagca tatgaaggcc tgtacggaca aggtccgccc agcgtgcaca gttcgcacgg 2401 aggtcgcgca ttccatcagc aaggatatga tactctacca atagattcga tgcagggtct 2461 ggagatcagc agcccggtgg gcggcggcgg cgctggcggt gctgccggca atggtggagc 2521 ggtgggcgga gctggcggcg gcggcggcaa catcggcccc atcccgccca gcggcgcacc 2581 cacatcaccc tactccatgg acatggatgt cggcgagatt gatgccggtg cattgaactt 2641 tgatttggac gccatgccga cgccacccaa tgacaacaac aatctggctg cctggtacga 2701 caccgactgc tagacgacga tgacgaggag cgagcgaaag agccgagcta agggtaaggg 2761 tcgaggagca tcaatccatt cgaccccaaa aacgagataa cacaaaacac acgagtcccc 2821 cgtcccagca atatagccct tttccactag gacgtggaga tgcagatgga gatggagcaa 2881 tcactgatga ccgatcaccg atataccgat attgactaga tcaacggaga gtgttgattt 2941 tacttgacaa agacgaggaa ggaagatagg atgctgcggc aggaagagcg agacgaaggc 3001 aatccgaagg tccgtgtccg tggaagaagg ctattgttca cacacccctc gacaaacata 3061 cacacccaca cgggcatact ggcatacatg aataatatta tatattaatt ataatgcgaa 3121 cgcagcggca taaaacatat tatatgatgc attacatatt atccacgtaa acgaaatgga 3181 aaattaaaca aatgtttgca atagaactcg tacatttccc ttca