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LOCUS XM_017151126 3214 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_017151126 VERSION XM_017151126.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151126.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3214 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3214 /gene="arm" /note="armadillo; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:108063862" CDS 172..2703 /gene="arm" /codon_start=1 /product="armadillo segment polarity protein isoform X1" /protein_id="XP_017006615.1" /db_xref="GeneID:108063862" /translation="MSYMPAQNRTMSHNNQYNPPDLPPMVSAKEQTLMWQQNSYLGDS GIHSGAVTQVPSLSGKEDEEMEGDPLMFDLDTGFPQNFTQDQVDDMNQQLSQTRSQRV RAAMFPETLEEGIEIPSTQFDPQQPTAVQRLSEPSQMLKHAVVNLINYQDDAELATRA IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVRAISNSNDLES TKAAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQDG SKMAVRLAGGLQKMVTLLQRNNVKFLAIVTDCLQILAYGNQESKLIILASGGPNELVR IMRSYDYEKLLWTTSRVLKVLSVCSSNKPAIVDAGGMQALAMHLGNMSPRLVQNCLWT LRNLSDAATKVEGLEALLQSLVQVLGSTDVNVVTCAAGILSNLTCNNQRNKATVCQVG GVDALVRTIINAGDREEITEPAVCALRHLTSRHVDSELAQNAVRLNYGLSVIVKLLHP PSRWPLIKAVIGLIRNLALCPANHAPLREHGAIHHLVRLLMRAFQDTERQRSSIATTG SQQPSAYADGVRMEEIVEGTVGALHILARESHNRALIRQQSVIPIFVRLLFNEIENIQ RVAAGVLCELAADKEGAEIIEQEGATGPLTDLLHSRNEGVATYAAAVLFRMSEDKPQD YKKRLSIELTNSLLREDNNIWANADLGMGPDLQDMLGPEEAYEGLYGQGPPSVHSSHG GRAFHQQGYDTLPIDSMQGLEISSPVGGGGAGGAAGNGGAVGGAGGGGGNIGPIPPSG APTSPYSMDMDVGEIDAGALNFDLDAMPTPPNDNNNLAAWYDTDC" misc_feature 424..648 /gene="arm" /note="alpha-catenin binding domain found in Drosophila melanogaster armadillo segment polarity protein (dArm) and similar proteins; Region: CTNNAbd_dArm; cd21726" /db_xref="CDD:439243" misc_feature order(442..453,463..468,472..480,487..492,499..501, 553..561,565..570,577..582,589..591,598..624) /gene="arm" /note="putative CNTTA binding site [polypeptide binding]; other site" /db_xref="CDD:439243" misc_feature <619..>1113 /gene="arm" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 652..729 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 748..864 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 883..981 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature order(952..954,964..966,976..978,1078..1080,1090..1092, 1102..1104,1207..1209,1219..1221,1231..1233) /gene="arm" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293788" misc_feature 1003..1113 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1129..1236 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1252..1365 /gene="arm" /note="Armadillo/beta-catenin-like repeat; Region: Arm; pfam00514" /db_xref="CDD:425727" misc_feature 1255..1362 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1399..1476 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature order(1447..1449,1459..1461,1471..1473,1579..1581, 1591..1593,1603..1605,1717..1719,1729..1731,1741..1743) /gene="arm" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293788" misc_feature 1486..1614 /gene="arm" /note="Armadillo/beta-catenin-like repeat; Region: Arm; pfam00514" /db_xref="CDD:425727" misc_feature 1498..1614 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1639..1746 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature order(1921..1923,1933..1935,1945..1947,2044..2046, 2056..2058,2068..2070,2167..2169,2179..2181,2191..2193) /gene="arm" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293788" misc_feature 1960..2079 /gene="arm" /note="Armadillo/beta-catenin-like repeat; Region: Arm; pfam00514" /db_xref="CDD:425727" misc_feature 1969..2079 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 2092..2196 /gene="arm" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" polyA_site 3214 /gene="arm" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agggcgatat atgtatacga tattccctat cgctatagcc ctatacacag ttttcgcagt 61 cggttgttgt cgaattttaa gattcaagtg cgtttaaaca acagaaacct gcctttgagc 121 agacaaaatt acttctgacg cggtgtggtg taaagcgcct taatcaccaa gatgagttac 181 atgccagccc agaatcgtac catgtcgcat aataatcaat acaatccgcc ggatctcccg 241 ccgatggtgt ccgccaagga gcagaccctc atgtggcagc agaactcgta tctgggcgac 301 tccggcatcc actcgggggc cgtgacccag gtgccgtcgc tgtccggcaa ggaggacgag 361 gagatggagg gggatcccct gatgttcgac ctggacaccg ggttcccgca gaactttacg 421 caggaccagg tggacgacat gaaccagcag ctgagccaga cgcgctccca acgcgtccgg 481 gctgccatgt tcccggagac gctggaggag ggcatcgaga ttccctccac ccagttcgat 541 ccccagcagc cgacggcggt gcagcgtctc tcggagccgt cgcagatgct gaagcacgcg 601 gtggtgaatc tgatcaacta ccaggacgac gccgagctgg ccaccagggc cattccggag 661 ctgatcaagc tgctgaacga cgaggaccag gtggtcgtct cccaggcggc catgatggtc 721 caccagctgt ccaagaagga ggcctcgcgc cacgccatca tgaacagccc ccagatggtg 781 gccgccctgg tgcgcgccat ctccaacagc aacgatctgg agagcaccaa ggccgcggtg 841 ggcacgctgc acaacttgtc gcaccatcgc cagggcctcc tggccatctt caagagcggc 901 ggaatcccgg cactcgtcaa gctgctctcc tcgccggtgg agagtgtgct cttctacgca 961 ataaccacgc tgcacaacct gctgctccac caggacggct ccaagatggc cgtacgcctg 1021 gccggcggcc tccagaagat ggtcacgctg ctgcagagga acaacgtcaa gttcctggcc 1081 atcgtcaccg attgcctgca gattctggcc tacggcaacc aggagagcaa gctcataatc 1141 ctcgcctccg gcgggccgaa cgagctggtg cgcatcatgc gctcctacga ctacgagaag 1201 ctgctgtgga ccacctcgcg ggtgctcaag gtgctgtccg tctgctccag caacaagccg 1261 gccatcgtgg acgccggcgg catgcaggcg ctggccatgc acctgggcaa catgtcgccg 1321 cgcctcgtgc agaactgtct gtggacactg cgcaacctgt ccgacgcggc caccaaggtg 1381 gagggtctcg aggccctgct ccagtcgctc gtccaggtcc tgggctccac cgatgtcaac 1441 gtggtcacct gtgccgccgg catcctctcg aatctgacgt gcaacaatca gcgcaacaag 1501 gccaccgtct gccaggtggg cggcgtggac gccctcgtcc gcaccatcat caatgccggg 1561 gatcgcgagg agatcaccga gccggccgtt tgcgccctgc gccacctgac ctcgcgtcac 1621 gtggactcgg agctggccca gaatgccgtg cgtctcaact acgggctgtc ggtgattgtg 1681 aagctgctgc atccaccgtc ccgctggccg ttgatcaagg ccgtcattgg gctcatacgc 1741 aacttggccc tctgtccggc caaccacgcc ccgttgcggg agcacggggc catccatcac 1801 ctggtgcggc tgctaatgcg cgccttccag gacacagaga ggcaacgctc ctcgattgcc 1861 accacgggct cccagcagcc gtctgcctac gccgacggcg tgcgcatgga ggagattgtc 1921 gagggcacgg tgggggccct gcatatcctg gcccgtgagt cccacaaccg ggcgctcatt 1981 cgccagcagt cggtgatacc gatctttgtg cgtttgctgt tcaacgaaat cgagaatatt 2041 cagcgcgtgg ctgctggggt tctttgtgag ctggccgccg acaaggaggg cgccgagatt 2101 atcgagcagg agggcgccac cgggccgctg accgacctgc tgcactcgcg caacgagggc 2161 gtggccacgt acgctgccgc cgtgctcttc cgcatgagcg aggacaagcc gcaggactac 2221 aagaagcgcc tgtccatcga gctgaccaac tcgctgctgc gcgaggacaa caacatttgg 2281 gccaacgccg acctgggcat gggtcccgat ctgcaggata tgcttggacc agaagaagca 2341 tatgaaggcc tgtacggaca aggtccgccc agcgtgcaca gttcgcacgg aggtcgcgca 2401 ttccatcagc aaggatatga tactctacca atagattcga tgcagggtct ggagatcagc 2461 agcccggtgg gcggcggcgg cgctggcggt gctgccggca atggtggagc ggtgggcgga 2521 gctggcggcg gcggcggcaa catcggcccc atcccgccca gcggcgcacc cacatcaccc 2581 tactccatgg acatggatgt cggcgagatt gatgccggtg cattgaactt tgatttggac 2641 gccatgccga cgccacccaa tgacaacaac aatctggctg cctggtacga caccgactgc 2701 tagacgacga tgacgaggag cgagcgaaag agccgagcta agggtaaggg tcgaggagca 2761 tcaatccatt cgaccccaaa aacgagataa cacaaaacac acgagtcccc cgtcccagca 2821 atatagccct tttccactag gacgtggaga tgcagatgga gatggagcaa tcactgatga 2881 ccgatcaccg atataccgat attgactaga tcaacggaga gtgttgattt tacttgacaa 2941 agacgaggaa ggaagatagg atgctgcggc aggaagagcg agacgaaggc aatccgaagg 3001 tccgtgtccg tggaagaagg ctattgttca cacacccctc gacaaacata cacacccaca 3061 cgggcatact ggcatacatg aataatatta tatattaatt ataatgcgaa cgcagcggca 3121 taaaacatat tatatgatgc attacatatt atccacgtaa acgaaatgga aaattaaaca 3181 aatgtttgca atagaactcg tacatttccc ttca