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LOCUS XM_017151120 3738 bp mRNA linear INV 09-DEC-2024 X3, mRNA. ACCESSION XM_017151120 VERSION XM_017151120.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151120.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3738 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3738 /gene="prage" /note="prage; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:108063859" CDS 262..2526 /gene="prage" /codon_start=1 /product="uncharacterized protein prage isoform X3" /protein_id="XP_017006609.3" /db_xref="GeneID:108063859" /translation="MHFFLEDFLQVHLLKIYDKMQRCNQNSSSSNINTTSNTSGSSNS NKRCPPKYAGNNLAATNGMMAYQQHATATAATLQHGSNKTRKSRYNSNGNKQQQQFGN IQKRNGIGIAGLAGSESSSSPSKTTWLERGYGHRLANSSCIEDKFLGQHNPGHRNSTS SEATSEDIDSSREHLNKPKGSSSGGGGSSCNNHVAGGNKSRSKRQAKSCGQQIRQNPD QKPAGATASKAKQANGKWRQQQPNPNGNANPNQQQQQQQQQKRSNKKVQGKCSSIAGN AGSNGAKHAGSHPRKMATCDSSSSSALSSPTSSPGSSPQANGSRKRIERSLMPGAALE WRRERERGRQNANFLVPPLRQYEQLDLDDRSLVQQLRRHVIDHHLLRVYGFPVESVVH EGAIEIFKCLPHMSFAAALAETVINCHDGLSSQQAEEVATSSDSGNSSPRSLDSESSG EWSGSECESSNSSSSSSSADGDGELGLELKYCQYVQVERSLAKPCARCKRHFLVDELT GEYLSREECHYHSGKYQRYYDGVCHGRWTCCNEGEESSPGCCQGDRHVWTGSVVGVNG PYYDFVRTQHRDQSEEQSPAVYALDCEMSYTGRGLDVTKVSLVALNGQLVYEHFVRPE CDIVDYNTRYSGISERDLRSGAKSLAEVQRDLLQLIAADTILVGHGLDNDLRALRLVH NTLIDTSISFPHCSGFPYRRALRHLTKVHLKREIQSGDGTTGHSSFEDARACMELMLW RIGREQDPTWSWDD" misc_feature <1801..1911 /gene="prage" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:473070" misc_feature 2023..2478 /gene="prage" /note="DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins; Region: REX1_like; cd06145" /db_xref="CDD:99848" misc_feature order(2032..2043,2047..2049,2266..2271,2275..2283, 2434..2436,2449..2451) /gene="prage" /note="active site" /db_xref="CDD:99848" misc_feature order(2032..2043,2047..2049,2266..2271,2275..2280, 2434..2436,2449..2451) /gene="prage" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:99848" misc_feature order(2032..2034,2038..2040,2281..2283,2434..2436, 2449..2451) /gene="prage" /note="catalytic site [active]" /db_xref="CDD:99848" polyA_site 3738 /gene="prage" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgaattgtac gactctgtct ctggggtttt ttcgctgtat ttttcttggc gcccagcttt 61 ttgtgtttat atcgcgagcg ttcgctaatc gcgccattta gttggctttc aactgcaagt 121 gcaggcggtt tgctaagggt tcccgtataa aatacaataa acaacaaacc atcaacaaca 181 gaaaattacc aaaacaaagc aaagtttttg ttttccgaaa cctgcaatta attcgaacgc 241 gtttatgtct gcagcggtgc gatgcatttc tttctcgaag atttcttgca agtacatcta 301 cttaagattt atgacaaaat gcagcgttgc aaccagaaca gcagcagcag caacatcaac 361 acgaccagca acaccagcgg cagcagcaac agcaacaaac gctgccctcc gaagtacgcc 421 ggcaacaacc tagcagcaac taacggcatg atggcctacc agcaacatgc aacagccacg 481 gcagcaacat tgcagcacgg cagcaacaag actcgcaaga gtcgctacaa cagcaacggc 541 aacaagcagc aacagcagtt tgggaatatt cagaagcgga atggcatcgg aatcgctggc 601 ctcgccggaa gtgagtcctc gtcctccccc tcgaagacca cctggttgga gagaggctac 661 ggacatcggc tggccaattc ttcatgcatc gaagacaaat tcctgggcca gcacaatccg 721 gggcatcgga atagcaccag cagcgaggcg accagcgagg acatcgactc cagcagggag 781 cacctgaaca agcccaaggg cagttcgagc ggaggaggcg gaagcagttg caacaaccat 841 gtggccggcg gcaacaagag ccgctcgaag cgccaggcga agtcgtgtgg ccagcagatc 901 cgccagaatc ccgaccagaa gccagcggga gccactgcct ccaaggccaa gcaggccaac 961 ggcaagtggc gccagcagca gcccaatccc aatggcaatg ccaatcccaa ccagcagcag 1021 cagcaacagc aacagcagaa gcgcagcaac aagaaagtgc agggaaagtg cagcagcatc 1081 gccggaaatg ccggcagcaa cggcgccaag cacgccggca gccatccccg caagatggcc 1141 acctgcgaca gcagctcctc ttcggccctc agctcgccca ccagttcgcc cggcagctcc 1201 ccgcaggcca acggcagccg gaagcggatc gagcgctccc tgatgccggg agccgctttg 1261 gagtggcggc gggagcggga acgcggccgc cagaacgcca acttcctggt gcccccgctc 1321 cggcagtacg agcagctgga cctggacgac cggagcctgg tgcagcagct gcggcgccac 1381 gtcatcgacc accacctgct gcgcgtctac ggcttccccg tggagtccgt cgtccacgag 1441 ggcgccatcg agatcttcaa gtgcctgccg cacatgagct tcgccgccgc cctggcggaa 1501 acggtgatca actgccacga cgggctgagc agccagcagg cggaggaggt ggccacctcc 1561 agtgactcgg gcaacagctc gccccgctcc ctggactcgg agtcctccgg cgagtggagc 1621 ggcagcgagt gcgagtcctc caactcctcc tcgtcctcgt cctccgccga tggcgatggc 1681 gaactgggtc tcgagctcaa gtactgccag tacgtccagg tggagcggag cctggccaag 1741 ccgtgcgccc gctgcaagcg gcacttcctg gtggacgagc tgaccggcga gtacctgagc 1801 cgcgaggagt gccactacca ctcgggcaag taccagcgct actacgacgg cgtctgccac 1861 ggccgctgga cgtgctgcaa cgagggcgag gagagctcgc cgggatgctg ccagggcgac 1921 cggcacgtgt ggaccggctc ggtggtgggc gtcaatgggc cgtactatga ttttgtgcgc 1981 acccagcaca gggatcagtc ggaagagcaa tcccccgccg tctacgccct cgactgcgag 2041 atgagctaca cgggccgcgg tctggacgtg accaaggtct cgctggtggc cctcaacggg 2101 cagctggtgt acgagcactt cgtgcggccc gagtgcgaca tcgtggacta caacacccgg 2161 tactcgggca tctcggagcg ggacctgcgc tccggcgcca agagcctggc cgaggtgcag 2221 cgggatctgc tccagctgat cgccgccgac acgatcctcg tcggccacgg gctggacaac 2281 gacctgcggg ccctgcggct ggtgcacaac accctgatcg acacctctat cagcttcccg 2341 cactgcagcg gcttccccta ccgccgggcc ctgcgccacc tgaccaaggt ccacctgaag 2401 cgggagatcc agagcggcga cgggaccacg ggacacagca gcttcgagga cgcgagggcc 2461 tgcatggagc tgatgctctg gcggatcggc cgggaacagg atcccacatg gagctgggac 2521 gattgaggag ggggatctat cgggggatct atcgaggggc cagcaagtac ttttagtcgt 2581 taggagatcg cctagtttgt accgtattca agaaacaaaa cacaatccca aaatctcagc 2641 tggggcgccc acctggcagt cggtttctat gccaccgatc tatactatac tgtgtagatc 2701 tataaagacc cattgccagg tgtcggctca gcgtatatca tatacaccta tatcgagaaa 2761 atcgagtaaa tcgagcaaat cgagtaaatc gcaaattgga aaaattacaa aaatggcaaa 2821 aaaaaaatag agaggataat aatatttata tgcgatacat aaggtacatt ttgtaagcgt 2881 atatttatag agataaaata gaactttaat ctacatatgt atatacacat attgtttttt 2941 ttttcttgat taatttcgaa ccacgagaaa atgtactgaa gttttagctg tgatgttttt 3001 ttcactttct cacatattta cacgacaaaa ggaaaatgaa aagtaaaagc aaacaaaaaa 3061 agagaagaaa aatacaaaaa tatatacata cgcatacatt atttttttaa gagcacagaa 3121 gaaaggcaat ccaaatactt tttaatttcg accaaaactt tcaactaaat cactccattt 3181 atcataatct accattaggt ttcgtttcgt tttatttttt ccccaaacca aaccatttct 3241 tttattattt tacgaatata caaatcatct catacgcaaa cggaagaaga aaaaagtaaa 3301 gtttaacttt aactacttta tacactatgc ataaacgtaa gttaggttaa tcctgtgttt 3361 ttttccaaaa ctttttgatt atttatttaa cgaattcgcg cgacaagttc attgaaaact 3421 tcttcaagtg tttaattttt cacattgaac tccattctta ggctaagcta tatatttgtt 3481 ttctctcgag aaactatcga ctattaaaac cactattcct tgactccgat ttcataagac 3541 gagacgagga atactttatt cgaaaatcga tgttcctagc agcataagtt tcagcacaag 3601 tacactgcaa aaagcggctg tttttatatt gaacggaaag agaaagaaga gaagagtaat 3661 gcaaatgcac aacgacaaaa tttaaagaga ataaaagaaa caaagatttg tttaaaacta 3721 aatatcacct caagcaaa