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LOCUS XM_017151119 4255 bp mRNA linear INV 09-DEC-2024 X1, mRNA. ACCESSION XM_017151119 VERSION XM_017151119.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151119.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4255 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4255 /gene="prage" /note="prage; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108063859" CDS 701..3043 /gene="prage" /codon_start=1 /product="uncharacterized protein prage isoform X1" /protein_id="XP_017006608.3" /db_xref="GeneID:108063859" /translation="MEQITNYFEHMDYVSFGVVALPCVVIAVYGFLQVASGLAKCKND KMQRCNQNSSSSNINTTSNTSGSSNSNKRCPPKYAGNNLAATNGMMAYQQHATATAAT LQHGSNKTRKSRYNSNGNKQQQQFGNIQKRNGIGIAGLAGSESSSSPSKTTWLERGYG HRLANSSCIEDKFLGQHNPGHRNSTSSEATSEDIDSSREHLNKPKGSSSGGGGSSCNN HVAGGNKSRSKRQAKSCGQQIRQNPDQKPAGATASKAKQANGKWRQQQPNPNGNANPN QQQQQQQQQKRSNKKVQGKCSSIAGNAGSNGAKHAGSHPRKMATCDSSSSSALSSPTS SPGSSPQANGSRKRIERSLMPGAALEWRRERERGRQNANFLVPPLRQYEQLDLDDRSL VQQLRRHVIDHHLLRVYGFPVESVVHEGAIEIFKCLPHMSFAAALAETVINCHDGLSS QQAEEVATSSDSGNSSPRSLDSESSGEWSGSECESSNSSSSSSSADGDGELGLELKYC QYVQVERSLAKPCARCKRHFLVDELTGEYLSREECHYHSGKYQRYYDGVCHGRWTCCN EGEESSPGCCQGDRHVWTGSVVGVNGPYYDFVRTQHRDQSEEQSPAVYALDCEMSYTG RGLDVTKVSLVALNGQLVYEHFVRPECDIVDYNTRYSGISERDLRSGAKSLAEVQRDL LQLIAADTILVGHGLDNDLRALRLVHNTLIDTSISFPHCSGFPYRRALRHLTKVHLKR EIQSGDGTTGHSSFEDARACMELMLWRIGREQDPTWSWDD" misc_feature <2318..2428 /gene="prage" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:473070" misc_feature 2540..2995 /gene="prage" /note="DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins; Region: REX1_like; cd06145" /db_xref="CDD:99848" misc_feature order(2549..2560,2564..2566,2783..2788,2792..2800, 2951..2953,2966..2968) /gene="prage" /note="active site" /db_xref="CDD:99848" misc_feature order(2549..2560,2564..2566,2783..2788,2792..2797, 2951..2953,2966..2968) /gene="prage" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:99848" misc_feature order(2549..2551,2555..2557,2798..2800,2951..2953, 2966..2968) /gene="prage" /note="catalytic site [active]" /db_xref="CDD:99848" polyA_site 4255 /gene="prage" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gccgtcgccg cacacgcagc gaatttactg cgcgctccgc cgacgagaaa taaaaagaaa 61 gctgaaaaat aaatcaacaa aatatatttt tcccacgacg cgcgttttcc gcgagtgttt 121 ttttttcggc aacttgccga tttgactttt tggatttttg gattttcacc tttccgtctt 181 actgggcatt ttccatttcc cattttccgt tcgagagtcc cggaggcatt cttgcgtttc 241 tggccaccga tgcaaatcaa ttacgccaga tttgcagtgc aaaacaatgg cgttatttgt 301 gcaacaacaa ttactaacac aaaggcagca gcaacaacaa gaacaacaag agcgaaaaaa 361 cccaaaaaca acaacaacaa aggcaaagga gcagacagcc caggacattc agttagtgcc 421 ccaaaaggag ccgccgcaac gacttgtgca aagaatataa atacctaaaa atcataaaca 481 aaaactggaa ctgaaaaaaa gataaaaatc tatatgaaca actaaactcg aaacgaaatt 541 gaaaaaaaat ctagatccaa agttgcgcct gcgcaaaaag aaagtttttg aaatttatcc 601 agccgaactg cgttattttg tttgcttttt gttcgagtgc atttcgagag tgttttataa 661 ataattgaaa aattaaaatt tcaaaagttg aaaccacaaa atggagcaaa ttacgaacta 721 cttcgagcac atggattacg tgtccttcgg cgtggtggca ctgccatgcg tcgtaatcgc 781 cgtctacgga ttcctccagg tggccagtgg actggcgaag tgcaaaaatg acaaaatgca 841 gcgttgcaac cagaacagca gcagcagcaa catcaacacg accagcaaca ccagcggcag 901 cagcaacagc aacaaacgct gccctccgaa gtacgccggc aacaacctag cagcaactaa 961 cggcatgatg gcctaccagc aacatgcaac agccacggca gcaacattgc agcacggcag 1021 caacaagact cgcaagagtc gctacaacag caacggcaac aagcagcaac agcagtttgg 1081 gaatattcag aagcggaatg gcatcggaat cgctggcctc gccggaagtg agtcctcgtc 1141 ctccccctcg aagaccacct ggttggagag aggctacgga catcggctgg ccaattcttc 1201 atgcatcgaa gacaaattcc tgggccagca caatccgggg catcggaata gcaccagcag 1261 cgaggcgacc agcgaggaca tcgactccag cagggagcac ctgaacaagc ccaagggcag 1321 ttcgagcgga ggaggcggaa gcagttgcaa caaccatgtg gccggcggca acaagagccg 1381 ctcgaagcgc caggcgaagt cgtgtggcca gcagatccgc cagaatcccg accagaagcc 1441 agcgggagcc actgcctcca aggccaagca ggccaacggc aagtggcgcc agcagcagcc 1501 caatcccaat ggcaatgcca atcccaacca gcagcagcag caacagcaac agcagaagcg 1561 cagcaacaag aaagtgcagg gaaagtgcag cagcatcgcc ggaaatgccg gcagcaacgg 1621 cgccaagcac gccggcagcc atccccgcaa gatggccacc tgcgacagca gctcctcttc 1681 ggccctcagc tcgcccacca gttcgcccgg cagctccccg caggccaacg gcagccggaa 1741 gcggatcgag cgctccctga tgccgggagc cgctttggag tggcggcggg agcgggaacg 1801 cggccgccag aacgccaact tcctggtgcc cccgctccgg cagtacgagc agctggacct 1861 ggacgaccgg agcctggtgc agcagctgcg gcgccacgtc atcgaccacc acctgctgcg 1921 cgtctacggc ttccccgtgg agtccgtcgt ccacgagggc gccatcgaga tcttcaagtg 1981 cctgccgcac atgagcttcg ccgccgccct ggcggaaacg gtgatcaact gccacgacgg 2041 gctgagcagc cagcaggcgg aggaggtggc cacctccagt gactcgggca acagctcgcc 2101 ccgctccctg gactcggagt cctccggcga gtggagcggc agcgagtgcg agtcctccaa 2161 ctcctcctcg tcctcgtcct ccgccgatgg cgatggcgaa ctgggtctcg agctcaagta 2221 ctgccagtac gtccaggtgg agcggagcct ggccaagccg tgcgcccgct gcaagcggca 2281 cttcctggtg gacgagctga ccggcgagta cctgagccgc gaggagtgcc actaccactc 2341 gggcaagtac cagcgctact acgacggcgt ctgccacggc cgctggacgt gctgcaacga 2401 gggcgaggag agctcgccgg gatgctgcca gggcgaccgg cacgtgtgga ccggctcggt 2461 ggtgggcgtc aatgggccgt actatgattt tgtgcgcacc cagcacaggg atcagtcgga 2521 agagcaatcc cccgccgtct acgccctcga ctgcgagatg agctacacgg gccgcggtct 2581 ggacgtgacc aaggtctcgc tggtggccct caacgggcag ctggtgtacg agcacttcgt 2641 gcggcccgag tgcgacatcg tggactacaa cacccggtac tcgggcatct cggagcggga 2701 cctgcgctcc ggcgccaaga gcctggccga ggtgcagcgg gatctgctcc agctgatcgc 2761 cgccgacacg atcctcgtcg gccacgggct ggacaacgac ctgcgggccc tgcggctggt 2821 gcacaacacc ctgatcgaca cctctatcag cttcccgcac tgcagcggct tcccctaccg 2881 ccgggccctg cgccacctga ccaaggtcca cctgaagcgg gagatccaga gcggcgacgg 2941 gaccacggga cacagcagct tcgaggacgc gagggcctgc atggagctga tgctctggcg 3001 gatcggccgg gaacaggatc ccacatggag ctgggacgat tgaggagggg gatctatcgg 3061 gggatctatc gaggggccag caagtacttt tagtcgttag gagatcgcct agtttgtacc 3121 gtattcaaga aacaaaacac aatcccaaaa tctcagctgg ggcgcccacc tggcagtcgg 3181 tttctatgcc accgatctat actatactgt gtagatctat aaagacccat tgccaggtgt 3241 cggctcagcg tatatcatat acacctatat cgagaaaatc gagtaaatcg agcaaatcga 3301 gtaaatcgca aattggaaaa attacaaaaa tggcaaaaaa aaaatagaga ggataataat 3361 atttatatgc gatacataag gtacattttg taagcgtata tttatagaga taaaatagaa 3421 ctttaatcta catatgtata tacacatatt gttttttttt tcttgattaa tttcgaacca 3481 cgagaaaatg tactgaagtt ttagctgtga tgtttttttc actttctcac atatttacac 3541 gacaaaagga aaatgaaaag taaaagcaaa caaaaaaaga gaagaaaaat acaaaaatat 3601 atacatacgc atacattatt tttttaagag cacagaagaa aggcaatcca aatacttttt 3661 aatttcgacc aaaactttca actaaatcac tccatttatc ataatctacc attaggtttc 3721 gtttcgtttt attttttccc caaaccaaac catttctttt attattttac gaatatacaa 3781 atcatctcat acgcaaacgg aagaagaaaa aagtaaagtt taactttaac tactttatac 3841 actatgcata aacgtaagtt aggttaatcc tgtgtttttt tccaaaactt tttgattatt 3901 tatttaacga attcgcgcga caagttcatt gaaaacttct tcaagtgttt aatttttcac 3961 attgaactcc attcttaggc taagctatat atttgttttc tctcgagaaa ctatcgacta 4021 ttaaaaccac tattccttga ctccgatttc ataagacgag acgaggaata ctttattcga 4081 aaatcgatgt tcctagcagc ataagtttca gcacaagtac actgcaaaaa gcggctgttt 4141 ttatattgaa cggaaagaga aagaagagaa gagtaatgca aatgcacaac gacaaaattt 4201 aaagagaata aaagaaacaa agatttgttt aaaactaaat atcacctcaa gcaaa