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LOCUS XM_017151109 3379 bp mRNA linear INV 09-DEC-2024 (su(w[a])), transcript variant X1, mRNA. ACCESSION XM_017151109 VERSION XM_017151109.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151109.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3379 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3379 /gene="su(w[a])" /note="suppressor of white-apricot; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108063852" CDS 283..3288 /gene="su(w[a])" /codon_start=1 /product="protein suppressor of white apricot isoform X1" /protein_id="XP_017006598.2" /db_xref="GeneID:108063852" /translation="MMPYNVRNAGGGSVGGILRRTGHASSSSSNLILSNGNGGTGMGG TVGTAGGSSSSASLNLENHRQTPLELLVFGYACKIFRDDEKAREMDHGKQLIPWMGDV NLKIDRYDVRGALCELAPHEAPPGGYGNRLEYLTAEEQRAEQLCEEERYLFLYNNEEE LRLRQEEDLKRLQQETSGGNYSQVGFQYDGQSAASASTAPSQLSPTSEENELPFVLPY TLMMVPPLGMQLPETMKQHAIIEKTARFIATQGAQMEILIKAKQANNNQFDFLTQGGH LQPYYRHLLAAIKAAKFPPAPEATLDQQQQQTGQDQESNPSTNDVHGEDGAGGGRRNS NQVVITVPTIKYKPSANCAYTQLISKIKGVPLQAVLLEDESSNPGNSQHSGTDSPTPS CRSEGHNSQGGGEFTPVLLQYNGSTFTHETETPQDDNENNSREPPQVELLKNTSALAL AQNYSSESDDEEEEEPEKEPEKKPEPVLTFPVPEESLRHIIDKTATYVIKNGRQFEET LRTKSVERFSFLLPANEFYAYYLYKVTGDVDAASKEEKTRKAAAVAAALMSKKGLSFG GAAAAALGTGNNLDKAPVSFSIRARDEHGPLQPTLPQETSDEEASSMAGGGGEQVRPG MPDSVQRAIKQVETQLLARTAGQKSSAAPSSCSSPQKEQRQAEERVKDKLAQIAREKL NGMISREKQLQLERKRKAMAFLNQIKGEGATVGSAVTGTAPNPPEAAAGASQSAGGES DNESNDESVRSIPITFFGPDDDDEVGDDDQKEPEVRLERRAKEDEEDDDEEDEDDDGD LEKYNLLNDDSTNTFTSKPAPSLVAPPPPAAASAVPAPAVLLSDDDDVQLVATSSSSR SSRSRPRKMPRRSMSRSRNGRSRSRSASSASSRESSHRRRQKSSKPSKEPSSSIAARK SQSQSTQRRKGSPKKRRRSRSRSRSRSHRRSRSRSSISRTNRRSRSRSYSGGSREAEQ RHRQQQQRRRTPTKKSHKRHKRRRRSSSP" misc_feature 490..852 /gene="su(w[a])" /note="Alternative splicing regulator; Region: DRY_EERY; pfam09750" /db_xref="CDD:462881" misc_feature 994..1146 /gene="su(w[a])" /note="Surp module; Region: Surp; pfam01805" /db_xref="CDD:460339" misc_feature 1744..1884 /gene="su(w[a])" /note="Suppressor-of-White-APricot splicing regulator; Region: SWAP; smart00648" /db_xref="CDD:197818" polyA_site 3379 /gene="su(w[a])" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tctcgcatcg gtacggtcac gctgcacctc tagcattttt atttcgcacg caaaataaaa 61 ataatggaaa gaaattgacc aaatccggcc gtaaaatgcg atcctccaga tcctagatcc 121 ccgaaatctt ggtacaaagt gagtgggcag cgacacagcg agagagagtg ggagaaagag 181 agctagtgag agtgagaggg agtgcagtgt cccgagcact cgatttggat tccagaaagg 241 atttggattt ggatttggat ttgcattact ttctgctgcg aaatgatgcc ctacaatgtg 301 cgaaatgccg gcggcggaag cgttggcgga atccttcggc gcacgggcca cgcttccagt 361 tccagttcca atctaatcct gagcaatggc aacggaggca cgggaatggg aggaacagtg 421 ggaacggcag gaggttcctc ctcctccgcc tctttgaacc tggaaaacca ccgacaaacg 481 ccgctggaac tgctcgtctt tggctacgcc tgcaagattt tccgggacga cgagaaggcg 541 cgggaaatgg accacggcaa gcagctaatt ccctggatgg gcgatgtaaa tctcaagata 601 gacagatacg atgtgcgtgg cgccctctgc gaactggcgc cccacgaggc gccacctggc 661 ggctatggca accgtttgga gtacttgacc gccgaggagc agcgcgccga gcaactttgc 721 gaggaggagc gctacctgtt cctctacaac aacgaggagg agctgcgact gcgccaagag 781 gaggacctca agcggctgca gcaggagacc tccggcggca actacagcca ggtgggcttc 841 cagtacgatg gccagtccgc ggcctcagcc tccacggcgc cctcgcagct ctcgccgacc 901 tccgaggaga acgagctgcc cttcgtcctg ccctacacgc tgatgatggt gcctccgttg 961 ggcatgcagc tgccggaaac gatgaagcag cacgccatta ttgagaagac agctcgcttc 1021 atcgccaccc agggtgccca gatggagatc ctgatcaagg cgaagcaggc gaacaacaac 1081 caattcgatt tcctcaccca gggtggccac ttgcagccgt actaccgtca ccttttggcc 1141 gccatcaagg cagcgaaatt cccgcccgct ccggaggcca cgttggatca gcagcagcag 1201 cagactggcc aggaccagga atcgaatcca tcaacgaacg atgtacatgg cgaggacgga 1261 gcgggcggag gaaggaggaa cagcaaccaa gtggtcatca cggtgcccac tattaagtac 1321 aaaccctcgg cgaactgcgc ctacacccag ctaattagca agatcaaggg cgttcccctg 1381 caggctgttt tgctggagga cgagtcgagt aatcccggga attcgcagca ctcgggcacg 1441 gattcaccca cgcccagctg ccgatccgaa ggtcacaaca gccagggcgg cggggaattc 1501 acgcccgtgc tgctgcagta caacgggagt accttcaccc atgagacgga gacgccgcag 1561 gatgacaacg agaacaacag tcgcgagccg ccgcaggtgg agctgcttaa gaacacgagt 1621 gccctggccc tggcccaaaa ctatagttcc gaaagcgatg atgaagagga ggaggagccg 1681 gaaaaggaac ccgaaaagaa acccgagccc gtcttgacct ttcccgttcc ggaggagagt 1741 ctgcggcaca taatcgacaa gacggccacg tatgtgatca agaacggacg gcaattcgag 1801 gagacgctgc gcacgaagag cgtggagcgg tttagtttcc tgctgccggc gaatgagttc 1861 tatgcctact acttgtacaa ggtgaccggc gatgtggatg cggcatccaa ggaggagaag 1921 actcgcaaag cggccgccgt ggcagctgcc ctgatgtcca agaagggact cagctttggc 1981 ggagcggcag ctgctgctct aggaactggc aacaatctgg ataaggctcc tgtaagtttc 2041 tccattcgcg ctcgggatga gcatggtcca ttgcaaccca ctcttccgca ggagaccagc 2101 gacgaggagg ccagttcgat ggccggtggc ggcggggagc aagtgcgtcc gggcatgccg 2161 gatagtgtgc agcgggccat caagcaggtg gagacgcaat tgttggccag gaccgccggt 2221 cagaagtcgt cagccgcccc atcctcgtgt tcctcgccgc aaaaagagca gcgacaagct 2281 gaggagcgcg taaaggacaa actggcgcaa atcgcccgcg agaagctgaa cggaatgatt 2341 tcccgcgaga aacaattgca attggagcga aaacgcaagg ccatggcctt tctcaatcag 2401 atcaaaggtg agggtgccac tgtgggttca gcggtgaccg gtactgctcc taatcctcca 2461 gaggctgcgg caggtgcttc gcaatcggca ggcggtgaaa gtgacaatga gtccaacgac 2521 gaatcggttc gatccatacc catcacattc tttggacccg acgacgatga cgaggtggga 2581 gatgatgatc agaaggagcc tgaggtgaga ctcgaaagga gagcgaagga ggatgaggag 2641 gacgacgacg aagaggacga ggatgacgat ggcgatctgg agaagtacaa tctgctaaac 2701 gatgatagca caaacacctt caccagcaaa cccgcacctt cgctcgtggc tcctcctcct 2761 cctgccgctg cttccgccgt ccccgcccct gccgttcttc tctccgacga cgacgacgtc 2821 cagctggtgg ccacgtcctc ctcctcgcga tcctcccggt cgcgtccccg taaaatgccc 2881 cgccggagca tgagtcgcag ccggaatggt cgcagcagaa gtcgcagtgc cagcagtgct 2941 tccagtcgag aatcctccca ccgacggcgc cagaaaagca gcaaaccttc caaggagcca 3001 tcatcctcga tcgcggcccg aaaatcccag tcgcagtcaa cgcagcgaag aaaaggaagc 3061 ccaaagaaga ggaggcgcag caggagtaga agccgatcaa ggagccaccg acggagtaga 3121 agcagaagca gcatatcacg caccaatagg cggagcagat cgcgtagcta ctccggcgga 3181 agtcgggagg cggaacagcg acaccggcag cagcagcaga ggcgccgcac gcccaccaag 3241 aagtcgcaca agcggcacaa gcgacgcagg cgcagcagct ccccctgatg atccagatcc 3301 aaatccacct ccacatttca aagttttttg tagttcacaa gttgtatcaa ataaaccacc 3361 aacatatttt tgtaaacaa