Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017151106 6665 bp mRNA linear INV 09-DEC-2024 Rbcn-3B (Rbcn-3B), mRNA. ACCESSION XM_017151106 VERSION XM_017151106.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151106.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6665 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6665 /gene="Rbcn-3B" /note="WD repeat-containing protein Rbcn-3B; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108063851" CDS 662..5248 /gene="Rbcn-3B" /codon_start=1 /product="WD repeat-containing protein 7" /protein_id="XP_017006595.3" /db_xref="GeneID:108063851" /translation="MVSTNLVVPVVLWGPTAPTHCISSVFLSDDQFTLVTGCYDGQIC LWQVEPSTLKMSPRCLLVGHSAPVLCLVRASLLPENNFLVSSSENGEMCTWDLTDGKC MEAVKLPQVHTQIQSYHTANSEDVRLFCIGYYAEIMVMDPFSLEVIYVLSSKVKPDWI SALHVLRPMRRKDDVVLAITTTGTVKVWTLTGNENKHAEPIYENESKEIRCLNAITMN CCAQNQRTVLLVCTKYWQIYDAGDFTVLCSVIAPARERWQGGDFLTSDRVMLWTDEGK GYLYKLPANCIPDNKEFHSKSVVRDAPYLYYVLQHAGDKVLSCPPAMKLLQGAGGQHN LLRGDSEGYISVWNVPEVPLDNISILQAKQMPPRVLKPHVCTSLVEAWSIMDPPPVGI LDQLSRITESPVKLTSSIYLPQQSRLVIGREDGSIVIVPATQTVMMQLLVGIKQNFSD WPSHQILYGHRGRVNCLLCPSMIHSRYEKSHLLSGGIDFAVCLWDLYSGSLLHRFCVH AGEITQLLVPPESCSPRILKCICSVASDHSVTLVSLQERKCVTLASRHLFPVVTIKWR PLDDFLIVGCSDGSVYVWQMETGHLDRVLHGMLAEEVLSACDEQAEDGGSGSGTVSNG TSASEMGMANPAVHFFRGLKSRNMNAIRHATQRGINQLQQLQGHNQGNFDFLMKHRSN PLVIQGLRTNPKDAESHILFFDIEGLIFELHSEEYAQMTPATLESLGVHLQNPKDGKS MHLDASKKIGDFFSKVKNKAVDVEKILKDKDKHGLVQKFKEKTEIVEKKVQAKVESLQ KAVEPHEEQQDLRSKIASKMEVTHVMEVAQLLLSLLHSWGLDPHLDKMCETRLGLLRP IVPISYGVLSKAGYMSLLLPTWQNNYAIPPGLQLPSSSKKRPLPEELQRLEHLTAVFT SRLHWELSTTLTTNHILALVAMSNTLLSMSAASFLPDSEKHKKLQRLAQRTDSTLSNE EEREELLAHHVSQIKHAWSLLATHHCFLLPDKIEALEPRKFKRPQVEMMVKRWQHHCI EIREAAQQILLGELTRMGKKGRKQLVESWAQYLPLYTHTEPIGGAQQQLALISQPAGG GAGGGAGGNGGGGGGGVGGGSGGGGGGTGGAGNVAGGDPHQDEDYEEEEEEIIRKPSS LSELKRKQTTAVILLGVIGAEFGQDISQESPNHRGSISMATGASLTSGAAAGGERRKS SVVEGFGIANNLARLTSMALAHLLYAPPSPKLPQYTPLRRAAIDLLGRGFTVWEPYLD VSKVLLGLLEISCEGKAVPNLNYKLPLTPQADACRTARHALRLIATARPAAFITTMAR EVARYNTMQQNAQSINAPLTQSVLHKAKGEILQCVEMLIDKMQSEIAGLLVEVMDIAL HCVDSNELKSRGLADLCPAICRFNQISHCAQTRRIAVGANSGNLAIYELRQNKCQMIP AHTHPITSLAFSPDGKYLVSYSCAENRLSFWQTSTGMFGLGQSQTRCTKGYSTAPIPD VSRLNPMRLAKLVWINNRTVTLMLADGSETRFNV" misc_feature 719..850 /gene="Rbcn-3B" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature <725..1267 /gene="Rbcn-3B" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 863..982 /gene="Rbcn-3B" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1013..1117 /gene="Rbcn-3B" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1139..1273 /gene="Rbcn-3B" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1295..1414 /gene="Rbcn-3B" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1877..2038 /gene="Rbcn-3B" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2018..>2452 /gene="Rbcn-3B" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 2198..2326 /gene="Rbcn-3B" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2339..2449 /gene="Rbcn-3B" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature <2864..3118 /gene="Rbcn-3B" /note="Gas vesicle protein YhaH [General function prediction only]; Region: GvpP; COG4980" /db_xref="CDD:444004" misc_feature <4892..>5077 /gene="Rbcn-3B" /note="WD40 repeat [General function prediction only]; Region: WD40; COG2319" /db_xref="CDD:441893" misc_feature 4985..5068 /gene="Rbcn-3B" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 6665 /gene="Rbcn-3B" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acacgcaaaa cctatcgaga accccacggt cgataaatac tttcgttgct tttttccaac 61 gtcgtgtaca aaaaaaagaa aaaaagagca ggaaaaaagc aaatacaagg gaaatacctg 121 cagagtgcag ccagtaaagt gtttaatttt gtttcccgtg gagtgccgac cagtgtgcaa 181 ttgtccagtg gaaagtgtgc agtgaaaaat gcccagcacc aaaacccaaa ggtggccagc 241 aaaagcaata acaaaatagc aaagaaaagt gctcgtgtgt tggtgtgctc ggggggtggt 301 gtgcgtttcg cccgtcccgt gtccataaat tagaatcgaa atcgagctga agtcaccgcg 361 acgacgatgt ccgtcgacca ggatcaataa ccactatcac catcgccgtt ggaccattaa 421 gttctccata tccggaggca atcggaatct gtaccttgga ggaataggaa tcggaatcgg 481 aattggaata ggaatcacgc gcgaatcggc caccccaata cggaaaactg ctgaaaaata 541 gaccgcagta ggcgaatcag cagcgagaag gaaggcggcg gaggaggaga aggatccaga 601 tccagatcca gttgcagatc caccgcagag attgggtaaa gcacacacca ccagcagcag 661 catggtgagt accaatctgg tggtgccggt ggtgctgtgg ggacccacgg cgcccacgca 721 ctgcatctcg agcgtgttcc tctcggacga ccagttcacc ctggtgaccg gctgctacga 781 cggccagatc tgcctgtggc aggtggagcc cagcaccctg aagatgtcgc cgcgctgcct 841 gctggtgggc cactcggcgc cggtgctgtg cctggtgcgc gcctcgctgc tgccggagaa 901 caacttcctg gtcagctcgt cggagaacgg cgagatgtgc acctgggacc tcacggacgg 961 caagtgcatg gaggcggtca agctgcccca ggtgcacacc cagatccaga gctaccacac 1021 ggccaacagc gaggacgtgc gcctcttctg catcggctac tacgccgaga tcatggtcat 1081 ggaccccttc agcctggagg tgatctacgt gctcagctcc aaggtcaagc cggactggat 1141 atccgccctc cacgtgctgc ggcccatgcg ccgcaaggac gacgtggtgc tggccatcac 1201 caccacgggc acggtgaagg tctggacgct cacgggcaac gagaacaagc acgcggagcc 1261 catctacgaa aacgagtcca aggagatccg ctgcctgaac gccatcacga tgaactgctg 1321 cgcccagaac cagcgcaccg tgctgctggt ctgcaccaag tactggcaga tctacgacgc 1381 cggcgacttc accgtcctct gctccgtgat cgccccggcg cgggagcgct ggcagggcgg 1441 ggacttcctc acctcggacc gcgtgatgct ctggacggac gagggcaagg gctacctgta 1501 caagctgccc gccaactgca ttccggacaa caaggagttc cactcgaaga gcgtggtccg 1561 ggacgcgccc tacctgtact acgtgctgca gcacgcgggc gacaaggtgc tctcctgccc 1621 gccggccatg aagctgctcc agggcgccgg cgggcagcac aacctgctgc gcggcgactc 1681 cgagggctac atctcggtgt ggaacgtgcc ggaggtgccg ctggacaaca tcagcatcct 1741 gcaggccaag cagatgccgc cgcgcgtgct caagccgcac gtgtgcacct cgctggtgga 1801 ggcctggtcc atcatggacc cgccgcccgt aggcatcctg gaccagctgt cgcgcatcac 1861 ggagtcgccg gtgaagctca cctcgagcat ctacctgccg cagcagagcc gcctggtgat 1921 cgggcgcgag gacggcagca tcgtgatcgt gccggccacc cagacggtga tgatgcagct 1981 gctggtgggc atcaagcaga acttcagcga ctggccctcg caccagatcc tgtacggcca 2041 tcgtggaagg gttaattgcc tgctctgtcc ctcgatgata cactcgcgct acgagaagtc 2101 gcacctgctc tcgggcggca tcgacttcgc cgtctgcctg tgggacctgt acagcggcag 2161 cctgctgcac cgcttctgcg tccacgccgg cgagatcacg cagctgctgg tgccgccgga 2221 gagctgcagc ccgcgcattc tcaagtgcat ctgttcggtg gcctcggacc actcggtgac 2281 gctggtctcg ctgcaggagc gcaagtgcgt caccctggcc agcaggcacc tcttccccgt 2341 ggtcaccatc aagtggcgcc cgttggacga cttcctcatc gtgggctgct cggacggcag 2401 tgtgtacgtg tggcagatgg agacgggcca cctggaccgc gtgctccacg gaatgctggc 2461 cgaggaggtg ctgtcggcct gcgacgagca ggcggaggac ggagggtcgg gaagtggtac 2521 tgtatccaat gggacttcgg ccagcgagat gggcatggcc aatccggcag tgcacttctt 2581 ccgcggcctc aagtcgcgca acatgaacgc catccgtcac gcgacgcagc gcgggatcaa 2641 ccagctgcag cagctgcagg gacacaacca gggaaacttc gacttcctga tgaagcaccg 2701 cagcaacccg ctggtcatcc agggactgcg caccaacccc aaggacgccg agagccacat 2761 cctcttcttc gacatcgagg gcctgatctt cgagctgcac agcgaggagt acgcccagat 2821 gacgccggcc acgctggagt cgctcggggt gcacctgcag aaccccaagg acggcaagtc 2881 gatgcacctg gacgcgagca agaagatcgg cgacttcttc agcaaggtca agaacaaggc 2941 ggtggacgtg gagaagatcc tgaaggacaa ggacaagcac ggcctggtgc aaaagttcaa 3001 ggagaagacc gagatcgtgg agaagaaggt gcaggccaag gtggagagcc tgcagaaggc 3061 ggtggagccg cacgaggagc agcaggacct ccggagcaag atcgcctcca agatggaggt 3121 cacgcacgtg atggaggtgg cccagctgct gctctcgctg ctgcactcct ggggcctgga 3181 cccgcacctg gacaagatgt gcgagacgcg gctgggcctg ctgcgcccca tagtgcccat 3241 ctcctacggc gtgctctcca aggccggcta catgtccctg ctgctgccca cgtggcagaa 3301 caactacgcc attccgccgg gcctccagct gccctccagc tccaagaagc gcccgctgcc 3361 ggaggagctg cagcgcctgg agcacctgac cgccgtcttc acctcgcgcc tgcactggga 3421 gctgagcacc acgctgacca ccaaccacat cctggccctg gtggccatgt ccaacacgct 3481 gctctcgatg agcgcggcct ccttcctgcc ggacagcgag aagcacaaga agctgcagcg 3541 cctggcccag cgcacggact ccacgctgag caacgaggag gagcgcgagg agctgctggc 3601 ccaccacgtc tcgcagatca agcacgcctg gagcctgctg gccacccacc actgcttcct 3661 gctgccggat aagatcgagg ccctcgagcc caggaagttc aagcggccgc aggtggagat 3721 gatggtcaag cgctggcagc accactgcat cgagatccgg gaggcggccc agcagatcct 3781 gctcggcgag ctcacccgca tgggcaagaa gggccgcaag cagctggtcg agagctgggc 3841 gcagtacctg ccgctctaca cgcacacgga gcccataggg ggggcccagc agcagctggc 3901 gctgatcagc cagccggcgg gtggcggagc gggcggagga gcgggcggca atggcggcgg 3961 aggaggagga ggcgtgggag gaggttccgg aggaggaggc ggcggaactg gaggtgccgg 4021 caacgtggcg ggcggcgatc cgcaccagga cgaggactac gaggaggagg aggaggagat 4081 catacgcaag ccatccagcc tgtcggagct gaagcgcaag cagaccacgg cagtcatact 4141 tctaggggtc ataggagccg agttcggtca ggacatctcg caggagtcgc cgaaccaccg 4201 gggcagcatc agcatggcca cgggagcgag tctcaccagt ggcgctgccg ccggcggcga 4261 gcggaggaag tcgagtgtgg tggagggctt cggcatagcc aacaacctgg cccggctcac 4321 ctccatggcc ctggcccacc tgctgtacgc gccgccgtcc ccgaagctgc cgcagtacac 4381 gccgctgcgc cgggcggcca tcgacctgct gggcaggggc ttcaccgtgt gggagcccta 4441 cctggacgtg tccaaggtgc tgctcggcct gctggagatc tcgtgcgagg gcaaggcggt 4501 gccgaacctg aactacaagc tgccgctgac cccgcaggcc gacgcctgcc ggacggccag 4561 gcacgcgctg cggctgatag ccaccgcccg gccggcggcc ttcatcacca ccatggcccg 4621 cgaggtggcc aggtacaaca cgatgcagca gaacgcgcag tccatcaacg cgccgctcac 4681 ccagtccgtg ctgcacaagg ccaagggcga gatcctgcag tgcgtggaga tgctgatcga 4741 caagatgcag tccgagatcg ccggcctgct ggtcgaggtg atggacatcg ccctgcactg 4801 cgtggacagc aacgagctga agagccgcgg cctggccgac ctctgcccgg ccatctgccg 4861 cttcaaccag atctcgcact gcgcccagac gcgccgcatc gccgtgggcg ccaacagcgg 4921 caacctggcc atctacgagc tgcgccagaa caagtgccag atgatcccgg cccacacgca 4981 ccccatcacc tcgctggcct tctcgcccga cggcaagtac ctggtctcgt actcctgcgc 5041 cgagaaccgc ctctccttct ggcagacctc cacgggcatg ttcggcctgg gccagtcgca 5101 gacgcgctgc acgaagggct actccacggc gcccattccg gacgtgtcgc ggctcaaccc 5161 gatgcggctg gccaagctgg tgtggatcaa caaccgcacg gtgactttaa tgctggccga 5221 cgggtcggag acgcgattca atgtctaggg aggaagcaga ggaggagcag gataataagg 5281 agagtccttc ggggtgtata gcatgttatt aggcaatcag cgcgggcttc aaaagcagca 5341 ggaggagcag gatgattcgc aggaggagca gaaacgacat aacaataatt attcaaaaat 5401 aaacaaaaat acaagaaaaa cagaaacgtc tggcgtttcg ttaaaaataa ttaaggcaga 5461 ggaaacaaag aaaagctaag caacattaag tcaaaaactt aggcaaacga aaactaagca 5521 aaatgaatgc aaacaacaat tcacaacaca cattttgtta tttatttata tacttaccct 5581 atatatctgt aacttatctg tatccgtatc cgtatctgta tctgtatgta ttttaatgta 5641 ttacacgatt ttaatatgcc ccctatattc cccctgctac gtccatttta ctttttagtg 5701 ctaaactttt actacccatc tactctttaa acacgtgttt ctgttcttgt tgttcgcttc 5761 ccatgcggaa aaaacaaaaa ctaaatccaa atattaacaa agtaaacaac aattaaccag 5821 atgcaggcaa acaacaacca caaccacacg agaaacaaca aaggaaatga aaaaacgata 5881 aaaaacaaag aatgaaaagc tgttattatt attacacaac tattattatt actattgtat 5941 gctactatta ttattattga tatttgttat gcctaatgta ttgttatata tatatatcta 6001 aaataaacct aaacaaatgt attgagcaaa gttacgaaac gaaacgaaac aaaaaacaaa 6061 tcaccaagaa ggaaaacgaa cattaactag agagcgaaga gttttttttt tttgaatact 6121 ataattactg taattcccat atagtttctt ctttcgatgt aatatttccg ctaaagcgtg 6181 tgtaaaaagt ctttgttgtt ctgtgaaaat gttataggaa aatcgaaatc tgtttataaa 6241 gtgcgagcca cacaatacac acacataatt tatttgcggc gttagtgtgc atcgatgcat 6301 cgagcgaata acggtactcg ggggcctgag aagtcaactg tcaaacccag aaatgcggtt 6361 aaaactattt atcctaactc tatatatata tacatatata tacccaactg aatttgcaat 6421 atgtgttcgt ttacgtattc aatacaacac aggcaaacac acgtgtacta tgtgagagag 6481 ttaattgaat ttgtgcttaa tttcaattac gaattatata tatatttaca tggatatata 6541 tgtgaagata catgcatact tatatacgaa atccttcaat caaagtatta cacaaacgaa 6601 acgaagcaac tacaacaatt atgtacggag tatacaacaa ataaagtcaa ccaaacatga 6661 gcaaa