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LOCUS XM_017151084 3136 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017151084 VERSION XM_017151084.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151084.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3136 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3136 /gene="Scgdelta" /note="sarcoglycan delta; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108063840" CDS 402..1574 /gene="Scgdelta" /codon_start=1 /product="delta-sarcoglycan" /protein_id="XP_017006573.2" /db_xref="GeneID:108063840" /translation="MLAAGSSEISDFGPNSQRLSVGTTPKRPHKAVGGGGGGGHRPGP MTTGGTSGSAGSGNGAARGGGGAPMTATTVTATTGKATVSGHGGHGHARGVVRSAPNP PGGRSNVDGFVGGIETYLGLIGWRKKCLYTLLLLLMLLIITNLVLTLWILKVMEFSTE GMGQLKIVPGGIQLSGQAIIMDMLRASTIRSRHGQPISIESSRNFSINTRDPNGMIEN HLFLGHDKFECLSAGFRINDTNGRSLFSVNRNEVTIGAHALRIEGEGGAVFRESVQTP HVRAEPGRELRLESPTRQLEMTAAKDINLQSRAGGIEVVALEDVKFRALDGSLRLESS KILMPNLRTAQPPILGTAQSRDHMHRVFQLCACSNGKLFLAAPHSICAGDDSTVCR" misc_feature 762..1538 /gene="Scgdelta" /note="Sarcoglycan complex subunit protein; Region: Sarcoglycan_1; pfam04790" /db_xref="CDD:461428" polyA_site 3136 /gene="Scgdelta" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gccgctgtgt tctgtgctgc cattccgtca gttgttgtgc tgccgtgaag gaggacggta 61 cccgtgcgcg gactcggtgc ttggaataca aatcacatac tgtttccaaa acatttcagt 121 ttccaaattc aggcggttcg aaaaattgct ttcgagtgct tattttttgt ctgtgcttct 181 tgcttttgcc catggctggc gttggaaatt gtgaaggtca gcgcgtcgtg tcgtcgcgat 241 cggactctca tctttgagtg tgtgtcgtaa tccgggcgag agatcaatag ctgtgaaaat 301 aggttaaata tcaagacttt cgaaatatcc aaaaattatt gaaacagccg gcaatcatga 361 gcctctcatg cctccactag ctgccgtgca gcagctcagc aatgttggct gctggcagca 421 gtgagatcag tgactttggg ccgaactcgc agcgattatc ggttggcacc acgcccaagc 481 gaccgcacaa ggccgttggt ggtggtggtg gaggtggcca tcgtcctggc ccaatgacaa 541 ctggcggcac cagcggatca gcgggaagcg gtaacggagc agccagagga ggcggaggag 601 cacccatgac tgccaccact gtgacagcga cgacgggcaa ggccacggtc agcggtcatg 661 gcggccatgg gcacgcgagg ggggtggttc gcagtgcccc caacccaccg ggcggacgct 721 ccaatgtgga cggattcgtg gggggcatcg agacgtatct gggcctcatt gggtggcgaa 781 agaagtgcct gtacaccctg ctcctgctgc tgatgctgct catcatcaca aatctggtgc 841 tcaccctctg gatactgaaa gtgatggagt tctcgacgga gggcatgggt cagctgaaaa 901 tcgtacccgg tggcatacag ctgtcgggac aggcgataat tatggacatg ctgcgcgcat 961 cgacaatccg ttcgcggcac ggccagccca tctccataga gtcatcacgt aacttttcaa 1021 tcaatacacg tgacccgaat ggcatgattg agaatcactt attcctggga cacgacaagt 1081 tcgagtgcct gtcggcgggc tttcgcataa acgacaccaa cggacgcagc ctgttctcgg 1141 tgaatcggaa tgaagtcaca atcggagccc acgccctgcg gatcgagggc gagggcggcg 1201 ctgtcttccg ggagtccgtg cagacgcccc atgtgcgcgc cgagccagga agggaactga 1261 gactcgaatc gcccacccgg caattggaga tgacggcggc caaggacatc aatttgcaat 1321 cgcgggcagg cggcatagaa gtcgtggccc tggaagatgt caagttccga gccctcgatg 1381 ggagcctgcg actggagtcc tcgaagatac tcatgcccaa tttacggacg gcccagccgc 1441 ccatcctggg cacggcccaa agcagggatc acatgcaccg cgtcttccag ctctgcgcct 1501 gctccaacgg caagctcttc ctggcggcac cgcactccat atgcgcgggc gacgactcca 1561 ccgtctgcag atgattgcac gacagcgcgc gatggcagtc cacatccaca tccacgtcca 1621 gatccgcatc gaattccgac taagaggagc gagtcacgac tatagccgat atctgtaggc 1681 acaggcatca cccaaaacgc acacgtacat gttgaattac tcatatgcta actgtaacat 1741 agaacggtat gccatataca cctaattagt ggaacatatg attacggata cccgataaat 1801 gattaatgat taatgattac ccatcatgcc atcataccca ctctcgaggg aattagggaa 1861 ctgtacccag actcgaagga caaaatcaag agcttcttag acacttggat gttgtgtact 1921 cactagtata acaaaaggct aatcggaggc ataggcattt cccccataga catacatact 1981 aaacatcacc gaagaagtta tataggaaaa tatgaaatca tagtcagaaa cagtcgaaac 2041 ccataatctg tattatcgtt aattgcagcc taacattatt ttaactatta taaattggga 2101 gtctaccagt ggacctgtgt gttttgtctt ttgttacccc aaaaacaaga tcatattgta 2161 attcgcctta aaagtatttc taatagtttt taattttaaa tattaatttt tttacacgca 2221 ttattgataa acgaattaat aaaatattaa aatttacgag gattttttca gaattctatt 2281 gttttcacta tagacttctg ctggctatcg ataattatcg attatagtcg aaaatatcag 2341 tgtcttttga tttatttatc aaatatcaga cccctttccc caaagcagtc cagagatatt 2401 gtacataaga ctgtctattt catagaactc gactactgca tcgtagcatc aaactgcaaa 2461 accaatacaa agtaactagg acgtactcgt aaatgtattc atgtagataa tcccgaagcg 2521 actaacgaag tttagaaaat gtttgtacga taactacgat cggaatcaga atcagaatca 2581 gattatccaa aatccgaagc agcatgctgg catttaaaac acaatacgaa gacaatgaaa 2641 tatcatccaa tgaatcgcaa gagctattta tacctatacc tacatgtgta atatcgcaga 2701 tacaaacaaa atattaaaac caatacgaat atgagtatag atatgaatat gaatatgagt 2761 aaatgagttt gaacatggct atggatatga atatgaatat ggatatggat ataaatataa 2821 ataaatataa atatgaatag agttgaatat gaaattgccg ttgaatttgt caagtgtgag 2881 aacactgata tatagatata tataaataca aataaatgta tatgtatctg tatgtatgta 2941 cacctaatgc aaaatgcttt taaagggaaa ttaagtttaa tttgttgttg atttttttta 3001 gcacgattag gaaacataat gtttatatag gaaatacgga gagtacggag gagaagaata 3061 cgaaatcttt atatatcaca tatattgtaa tacagcaaga atacttaaaa acgaaataca 3121 tgcgtaaacc aagtaa