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LOCUS XM_017151081 6829 bp mRNA linear INV 09-DEC-2024 (Adar), transcript variant X10, mRNA. ACCESSION XM_017151081 VERSION XM_017151081.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151081.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6829 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6829 /gene="Adar" /note="Adenosine deaminase acting on RNA; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins" /db_xref="GeneID:108063839" CDS 5..1906 /gene="Adar" /codon_start=1 /product="double-stranded RNA-specific editase Adar isoform X3" /protein_id="XP_017006570.1" /db_xref="GeneID:108063839" /translation="MLNSANNNSPQHPVSAPSDINMNGYNRKSPQKRRYEMPKYAVSP KKKTCKERIPQPKNTVAMLNELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQGR SKKVARIEAAATALRSFIQFKDGAVLSPLKPSGNLDFTSDEHLENDVSKSAITVDGQK KVPDKGPVMLLYELFNDVNFECINIDGAQNNCRFKMTVTINEKKFDGTGPSKKLAKNA AAKAALASLCNISYSPMVVPQKNVPLPIDDKSSSMELPQIHADTIGRLVLEKFMEVIK GQEAYSRRKVLAGIVMTENMNFCEAKVISVSTGTKCVSGEHMSVNGAVLNDSHAEIVS RRCLLKFLYAQLDLQCNQATAYQSIFVRNTDGQYPYKLKSGVHFHLYINTAPCGDARI FSPHENDTGVDKHPNRKARGQLRTKIESGEGTIPVKSSDGIQTWDGVLQGQRLLTMSC SDKIARWNIVGIQGSLLSSIIEPVYLHSIVLGSLLHPEHMYRAVCGRIEKSIQGLPPP YHLNKPRLALVTSAEPRNQAKAPNFGINWTIGDTELEVVNSLTGRTIGGQVSRITKQA FFVKYGFLMTNLPGILVRKVTTDYGQTKANVKDYQIAKLELFSAFKREDLGSWLKKPI EQDEFGLAE" misc_feature 173..361 /gene="Adar" /note="first double-stranded RNA binding motif of STRBP, ILF3, RED1, RED2 and similar proteins; Region: DSRM_STRBP_RED-like_rpt1; cd19865" /db_xref="CDD:380694" misc_feature order(173..175,182..187,194..199,203..205,245..250, 254..256,260..262,311..319,326..328) /gene="Adar" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:380694" misc_feature 497..>637 /gene="Adar" /note="double-stranded RNA binding motif (DSRM) superfamily; Region: DSRM_SF; cl00054" /db_xref="CDD:444671" misc_feature 776..1891 /gene="Adar" /note="tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase); Region: ADEAMc; smart00552" /db_xref="CDD:214718" polyA_site 6829 /gene="Adar" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agtcatgtta aacagcgcaa ataacaattc tccccagcac ccggtgagtg caccatctga 61 tatcaacatg aacggatata accggaagtc gcctcaaaaa cggcgctatg agatgccaaa 121 atatgctgta tcaccaaaaa agaaaacctg caaggagcgc attccgcagc caaagaatac 181 ggtggcaatg ctgaatgagt taagacatgg actgatttac aaattggagt cacagactgg 241 tccggtgcac gcacctttat ttacgatatc cgttgaggtc gatggacaga aatacttggg 301 ccagggtcgc agtaaaaaag ttgcacgcat cgaggcagct gccacagcac tgcgaagctt 361 tatacaattc aaggacggag ccgtcttgtc gccattgaag ccatcgggca acttggactt 421 taccagcgat gaacatctag aaaatgatgt cagcaagagt gccatcactg ttgacggtca 481 aaagaaggtt ccggacaagg gtcccgtaat gctgctctac gaattgttca acgatgttaa 541 ttttgaatgc attaatattg acggagctca aaacaattgt cgcttcaaga tgaccgtcac 601 gattaacgaa aagaagttcg atggaacagg tccttccaaa aagctggcga aaaatgctgc 661 ggccaaagcg gcacttgcct cgttgtgcaa catttcctac agtccaatgg tggtgccaca 721 aaagaacgta ccccttccaa tcgacgacaa gtcgtcatcc atggagttgc cgcagataca 781 tgccgatacg attggacgcc tggttttgga gaagttcatg gaagtaatca agggccagga 841 ggcctactcg cgtcgaaagg tattggcggg cattgttatg actgaaaaca tgaatttttg 901 tgaagccaaa gttatttcag tctcgacggg caccaagtgt gtcagcggcg agcatatgag 961 tgtgaacgga gctgtcctga acgattccca tgccgaaata gtgtctaggc gttgtctcct 1021 caagttcttg tatgcacagc tggatcttca gtgcaatcag gccacagcat atcagtcgat 1081 tttcgtgagg aatactgatg ggcaataccc ttataaacta aaatccgggg tacatttcca 1141 tttgtatata aatacagcac cttgtgggga tgcacggata tttagtcctc acgaaaacga 1201 cactggtgtt gataaacatc caaatagaaa agctcgcggc cagttgcgta caaaaatcga 1261 gtccggtgag gggacgattc cagtcaaaag cagtgatgga atacagacgt gggatggcgt 1321 gctgcagggc caacgcttgc tgacaatgtc gtgctcggac aaaattgcac gatggaacat 1381 cgtgggtata caaggctcct tgttgtcttc cataattgaa ccagtgtacc tgcattcgat 1441 tgtgctgggc agtttgctgc acccagagca catgtaccgt gcagtgtgcg gccggatcga 1501 aaagtccatt caaggtctgc cgccgccgta tcatttgaat aagccccggc tcgcattggt 1561 cacttcggcc gagccgcgga atcaggccaa ggctccaaac tttggtatca attggaccat 1621 tggagatacc gagttggaag tggtgaactc gcttactggt cgaacaatcg gcggtcaagt 1681 gtctcgcatc acgaaacagg cgttttttgt taaatatgga tttttaatga caaacttacc 1741 aggtatttta gtccgcaaag taaccacaga ctacgggcaa accaaagcta acgtaaagga 1801 ctatcagatc gcaaagctag aattgttttc ggcattcaaa cgtgaagacc ttggcagctg 1861 gctgaagaaa cccattgaac aagacgagtt cggtcttgcc gaatgactgc actcagcact 1921 attatataat ttaaaaaaag acaacagtaa cggcaagcaa ttaatagaat tagatgacat 1981 agattttatg acaaactctt atgtagaatg caaattaagt tgggtgcaaa gacatcgata 2041 tgaaattcat acgattgaga acctgccaac attgcgtacc cattgcaaca gcaagcacaa 2101 agatgcttat gctcgaaata tgaaaaaagg ctctagaata tttatagaat agaatgtagt 2161 ttttatgctg gaactgagta aaggagtatt atggcgtttt tttttgaatc aattcatttt 2221 caaattggtt aaggcaatct ctttcgcatc taagtttgcc acacgtttca ttttttaaat 2281 cgaaataaaa cgatttcgcc ccaaccacac tgttataatt ttcaagtgag ttgggttgtt 2341 taagtgccca tattttacaa aaatgtggta ataaataatg ttgcaagaca ggtaaaacaa 2401 gaagggaagc ccttgcagat cgttcctatg gcagctgtat gaaatagcac tccagagttt 2461 ctgtattata ttgtttttcc tttattttcc gatcgttcat ataatagtca tccatttttt 2521 cttttaattt aactcgttat tctaaaatat ttttaatatt ccctaaaaag aagaaataat 2581 gtttaaaaac aacgaattta taatttttct ctattaattt tccgttttga tgtccctctg 2641 caagggtaaa aaactataaa accaacaagt aaaatctata aataacaata accaaaacag 2701 aaatctctag actttgttct gttatcgatt aagcaatgta ttttgttaag taatgttatt 2761 tgcaacgaca taataattat aataaagtca cgcttactat aagcataacg taaactttag 2821 gtgaatctac attatttcca catatttttc ttcagatcat atatacacct aagctttcat 2881 cgattttcaa taaataaaac tgtgttctcg gttgaaaaac tttaaatata aaaacatttt 2941 atcaatttaa ttatgtagat ttttttaaaa attagttgaa atcacatgca aatgaaaagg 3001 atataaatag attagttaaa aattttatag catgataaag acattttaaa tacctaagtc 3061 taataatgaa gcttgtaacg ccattttgta taatgtagac gacatattgt attagttgta 3121 cacttgtaca tcataatatt ttctattaaa aacttacttc ttcctgattt cttccaattg 3181 gcttatttct ggttgttcga tcaattaaaa atggcaattg taaatggtca agaatcatgc 3241 tgaaatacaa aagtatttac tttttaatga ttgctcttcc aacgtgacct gaagtattcg 3301 tattcaatat aaggcgattt ggccctttct tttcaattgt acatggaaat ggtacgatta 3361 ataaactagt cagatgtggt attctcatta tctttaaaaa ttgagtcatg taaaataagt 3421 attacgtcga agttgcataa aacacgaaaa agaaaaggac tgcaagacgt tagagcagaa 3481 cagcttattt cgtgcactca gttgtaattt ttccgaatcg acttgacaac aacaaaaata 3541 catacgactt caaaaaagtt aaaataccgt tttgttatga tataatttct caagaaaacc 3601 cgtttgttta ttttcgtact agaacacttc agcttatctc gtgcaacgac ttgtagaata 3661 gccgaaatta ttttaattgt tttgtttttt ttactaagtt tgtaacttta ttattaactt 3721 gtaaaacgct aaaatgttga caaataaatt ttagaaattt aatacattta tgtaccaaaa 3781 tgcaaaaata aaatgtttta acaacaatga atataaatta atttcacttt aatttctgaa 3841 atattattcc ttaaatacct gtattgggta attccttatt ttccaaaaaa taattatttt 3901 atgaaaattt gatctttgtt taatagtaaa tctaaaatta gtaatttctt attattattt 3961 tcaaggcctg ataaatgtca atttttaaat gtctgtacga aataagctct ggaaatgtaa 4021 tataccttac gggataccaa cttctgttac aatattataa tgaacggggc tttttacatg 4081 tgaaattata agctaagaaa acattgcttg cgattttcaa tatgttttgt atttttgaag 4141 ttatgccgat atcaaaaaat gaaattatat attttttctt ttagtttttt tcgccgcatg 4201 ctaaaaataa attggcagag tatgagtatt cgtaaaagag aatacacagc ttgtgagatt 4261 ttctccatta cttgattata taataatata taccattcta atatgacgat ataattgact 4321 taagtaatat ttgcaaaaaa taccgcatat gatggataaa caaaagttga tcttatataa 4381 aatactgtga tactaaattt tactagtact tccagcatag ctgcatttta tccattctta 4441 aatattctat gataagcagc agcagataat aatcaatgac tatataggaa aacaaaaaat 4501 ttttaaatga catggctcaa tgcttgtcta cattagattt tcaaataaga aattttacaa 4561 tatatatatt aatacgtatg aaaaggtggg tataacattg ggattcctta aatatcattt 4621 taaattgcaa tgcaaaacaa taggccctat gatgcaagca taaatagatg atctttagtc 4681 aactaacttt tattgctgca acataacaaa agtacagaaa actggagaac aaaaatatac 4741 tggaacatat attaaattaa aatcaataat atgtaggtta gatgcgtcgg tttattcaag 4801 acccagctaa gaaaagttta atatttatta aaacaattat ctaagaaagc tgataaaact 4861 atgagacatt tttttaattt aaattagttt ggggaaaagt aaatatttac aatagtatgc 4921 tagtcattaa acgagtattc tactcttgtt atggaatggc tttgattctt cacatattaa 4981 gttgatttgc ctaataattc gtatacatat tattttaaat tataattgag aactgtttgc 5041 gaaaaagaaa tagaaatacc acagttttaa atggatatta attgtacttg caagcttgac 5101 ttacaataat atagataaga agtatacaaa gcaaaaggtt gctcaaattg caaagctttt 5161 ggaaagtatt tctctctctt ccggacaaaa gtgtagtcct gcaaacatac ataagtagat 5221 gcttatagaa cacatcgggc tatattgtaa cccgttaaaa cagtgataag aagatgcgtt 5281 gagacccgta ccactatgat gtagaccaaa acgaggcaaa gaaatgttat taaaaccgta 5341 tagcaggaag ataaactaat caaccagtac tacatacata tgtacgttgt cagcaatcca 5401 acaaagatgt ttggattagt cgcataggac aattacatta tttgaaattg tacgaatatt 5461 taagacaact aatgtcaaac ttgggttaac ttatattctt tagaatctaa acatgggcaa 5521 catcgaaggt gaacacttac tattgatttg tagttttaaa atgttgaaag actataacca 5581 aatgaattat ctaagacaca accggcaaaa cctagtgccg ttcagagaaa gggatgcaca 5641 taaaaatatg acaaatctgc tttcatttat atttttaaac ttcacggcat ctttaaatat 5701 catctctgag attacagaat atatacttac tcattaactt cttattctga ctacaaatga 5761 tataaaagac aaaacactta atatctaaat atacagaaca aacttgaatt taaaaactag 5821 gtttacacgt tccaattcga acacttgaac ttcacttatc cacatttcat caagtttacc 5881 aagacaattt acatgacgat tcattgaagt accaaagtat caaacaatat aatcggaaaa 5941 ttaaaaatac tgttaaatcg attatctgtt tttcgaaaaa gaatccacat tttcatttaa 6001 gcatccacac atttttttga ttccaccgaa attttttaat ttttaaggat aagtgggttt 6061 ataaaagtct taagcaaatg cagacatcca aaaatcgaat cgcttcttta gttttgaaaa 6121 cagtatatgc ataacataat atataaaaat acacacttat acgtaaatct ttgttcttga 6181 tcaaaagtta gtgcaaatat ccaaacgaat aaagcagaat aataaacact taatatctaa 6241 ataaacagaa caaactttaa ttaaaagaaa ttaggtttac actacgtaca ctaaaacttc 6301 gcttatctaa atttcaataa gtacgtttag ataaacaaaa cattaagata ccaaagtagt 6361 aacaatctag tcggaaaatg agaaatcata tttaaatgca gtttatgttg cgacaaatta 6421 aatacttttt taggcattga ttgctttctt ggttcttcaa aatgtgtaat tttggaggac 6481 aagtgggttc aagaaggtca caatcgaatg cagacatcaa aaaatatgac attactttaa 6541 acatttagtt ttaaaacaaa cccgaatgta ccatgaaatc agtatatgca tagcttaata 6601 tatacaaaat acacacttat acgtaaaatt ttgttcttca tcaaaattta gtgcaaatag 6661 ccagacgatt aaaatagaat aatagcaagc aacaacaaca gtgttggcgg ctacattaaa 6721 acaaatgtat caatacttta aaaattttaa aatagatctt acgatggcct ttttatttta 6781 taatcgactg tcagccaata aaatgatccc cacgtcatta aagccgaaa