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LOCUS XM_017151080 7243 bp mRNA linear INV 09-DEC-2024 (Adar), transcript variant X8, mRNA. ACCESSION XM_017151080 VERSION XM_017151080.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151080.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7243 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7243 /gene="Adar" /note="Adenosine deaminase acting on RNA; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108063839" CDS 353..2320 /gene="Adar" /codon_start=1 /product="double-stranded RNA-specific editase Adar isoform X2" /protein_id="XP_017006569.1" /db_xref="GeneID:108063839" /translation="MNGYNRKSPQKRRYEMPKYAVSPKKKTCKERIPQPKNTVAMLNE LRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQGRSKKVARIEAAATALRSFIQFK DGAVLSPLKPSGNLDFTSDEHLENGIENLSNKQLVEIIEPLMLTEKKSNLTSLEQPTL RLQMFCMSQNVSKSAITVDGQKKVPDKGPVMLLYELFNDVNFECINIDGAQNNCRFKM TVTINEKKFDGTGPSKKLAKNAAAKAALASLCNISYSPMVVPQKNVPLPIDDKSSSME LPQIHADTIGRLVLEKFMEVIKGQEAYSRRKVLAGIVMTENMNFCEAKVISVSTGTKC VSGEHMSVNGAVLNDSHAEIVSRRCLLKFLYAQLDLQCNQATAYQSIFVRNTDGQYPY KLKSGVHFHLYINTAPCGDARIFSPHENDTGVDKHPNRKARGQLRTKIESGEGTIPVK SSDGIQTWDGVLQGQRLLTMSCSDKIARWNIVGIQGSLLSSIIEPVYLHSIVLGSLLH PEHMYRAVCGRIEKSIQGLPPPYHLNKPRLALVTSAEPRNQAKAPNFGINWTIGDTEL EVVNSLTGRTIGGQVSRITKQAFFVKYGFLMTNLPGILVRKVTTDYGQTKANVKDYQI AKLELFSAFKREDLGSWLKKPIEQDEFGLAE" misc_feature 458..646 /gene="Adar" /note="first double-stranded RNA binding motif of STRBP, ILF3, RED1, RED2 and similar proteins; Region: DSRM_STRBP_RED-like_rpt1; cd19865" /db_xref="CDD:380694" misc_feature order(458..460,467..472,479..484,488..490,530..535, 539..541,545..547,596..604,611..613) /gene="Adar" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:380694" misc_feature 911..>1051 /gene="Adar" /note="double-stranded RNA binding motif (DSRM) superfamily; Region: DSRM_SF; cl00054" /db_xref="CDD:444671" misc_feature 1190..2305 /gene="Adar" /note="tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase); Region: ADEAMc; smart00552" /db_xref="CDD:214718" polyA_site 7243 /gene="Adar" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcgcttccc cacctctaca gaactctaac cgacgaagtg tcattgtttt tttttctaat 61 gtaatggact taaatctttg cattcgaatc gagtgaatcc gggactgcag tctccccccc 121 gaacaccaaa cacccaatcg aattcgcggc cagaggagcg gatagagagc accgaggata 181 gaggaaacgc ttaaaattga tttgtttgtc cggccatgtc agtgtgtgtg tgacaagggc 241 tcgtccgtgt gcgtgcgcct gtcgctgtgt gtgtgtgctc tctttttttt cttcctatcg 301 agtgccgcta aattgaataa ttgcaccggt gagtgcacca tctgatatca acatgaacgg 361 atataaccgg aagtcgcctc aaaaacggcg ctatgagatg ccaaaatatg ctgtatcacc 421 aaaaaagaaa acctgcaagg agcgcattcc gcagccaaag aatacggtgg caatgctgaa 481 tgagttaaga catggactga tttacaaatt ggagtcacag actggtccgg tgcacgcacc 541 tttatttacg atatccgttg aggtcgatgg acagaaatac ttgggccagg gtcgcagtaa 601 aaaagttgca cgcatcgagg cagctgccac agcactgcga agctttatac aattcaagga 661 cggagccgtc ttgtcgccat tgaagccatc gggcaacttg gactttacca gcgatgaaca 721 tctagaaaat ggtattgaaa atttgtccaa caaacaattg gtcgagatca ttgagccgtt 781 gatgttgact gaaaagaaat ccaaccttac ctcgcttgaa caacccacgt tgcgtcttca 841 aatgttttgc atgagtcaga atgtcagcaa gagtgccatc actgttgacg gtcaaaagaa 901 ggttccggac aagggtcccg taatgctgct ctacgaattg ttcaacgatg ttaattttga 961 atgcattaat attgacggag ctcaaaacaa ttgtcgcttc aagatgaccg tcacgattaa 1021 cgaaaagaag ttcgatggaa caggtccttc caaaaagctg gcgaaaaatg ctgcggccaa 1081 agcggcactt gcctcgttgt gcaacatttc ctacagtcca atggtggtgc cacaaaagaa 1141 cgtacccctt ccaatcgacg acaagtcgtc atccatggag ttgccgcaga tacatgccga 1201 tacgattgga cgcctggttt tggagaagtt catggaagta atcaagggcc aggaggccta 1261 ctcgcgtcga aaggtattgg cgggcattgt tatgactgaa aacatgaatt tttgtgaagc 1321 caaagttatt tcagtctcga cgggcaccaa gtgtgtcagc ggcgagcata tgagtgtgaa 1381 cggagctgtc ctgaacgatt cccatgccga aatagtgtct aggcgttgtc tcctcaagtt 1441 cttgtatgca cagctggatc ttcagtgcaa tcaggccaca gcatatcagt cgattttcgt 1501 gaggaatact gatgggcaat acccttataa actaaaatcc ggggtacatt tccatttgta 1561 tataaataca gcaccttgtg gggatgcacg gatatttagt cctcacgaaa acgacactgg 1621 tgttgataaa catccaaata gaaaagctcg cggccagttg cgtacaaaaa tcgagtccgg 1681 tgaggggacg attccagtca aaagcagtga tggaatacag acgtgggatg gcgtgctgca 1741 gggccaacgc ttgctgacaa tgtcgtgctc ggacaaaatt gcacgatgga acatcgtggg 1801 tatacaaggc tccttgttgt cttccataat tgaaccagtg tacctgcatt cgattgtgct 1861 gggcagtttg ctgcacccag agcacatgta ccgtgcagtg tgcggccgga tcgaaaagtc 1921 cattcaaggt ctgccgccgc cgtatcattt gaataagccc cggctcgcat tggtcacttc 1981 ggccgagccg cggaatcagg ccaaggctcc aaactttggt atcaattgga ccattggaga 2041 taccgagttg gaagtggtga actcgcttac tggtcgaaca atcggcggtc aagtgtctcg 2101 catcacgaaa caggcgtttt ttgttaaata tggattttta atgacaaact taccaggtat 2161 tttagtccgc aaagtaacca cagactacgg gcaaaccaaa gctaacgtaa aggactatca 2221 gatcgcaaag ctagaattgt tttcggcatt caaacgtgaa gaccttggca gctggctgaa 2281 gaaacccatt gaacaagacg agttcggtct tgccgaatga ctgcactcag cactattata 2341 taatttaaaa aaagacaaca gtaacggcaa gcaattaata gaattagatg acatagattt 2401 tatgacaaac tcttatgtag aatgcaaatt aagttgggtg caaagacatc gatatgaaat 2461 tcatacgatt gagaacctgc caacattgcg tacccattgc aacagcaagc acaaagatgc 2521 ttatgctcga aatatgaaaa aaggctctag aatatttata gaatagaatg tagtttttat 2581 gctggaactg agtaaaggag tattatggcg tttttttttg aatcaattca ttttcaaatt 2641 ggttaaggca atctctttcg catctaagtt tgccacacgt ttcatttttt aaatcgaaat 2701 aaaacgattt cgccccaacc acactgttat aattttcaag tgagttgggt tgtttaagtg 2761 cccatatttt acaaaaatgt ggtaataaat aatgttgcaa gacaggtaaa acaagaaggg 2821 aagcccttgc agatcgttcc tatggcagct gtatgaaata gcactccaga gtttctgtat 2881 tatattgttt ttcctttatt ttccgatcgt tcatataata gtcatccatt ttttctttta 2941 atttaactcg ttattctaaa atatttttaa tattccctaa aaagaagaaa taatgtttaa 3001 aaacaacgaa tttataattt ttctctatta attttccgtt ttgatgtccc tctgcaaggg 3061 taaaaaacta taaaaccaac aagtaaaatc tataaataac aataaccaaa acagaaatct 3121 ctagactttg ttctgttatc gattaagcaa tgtattttgt taagtaatgt tatttgcaac 3181 gacataataa ttataataaa gtcacgctta ctataagcat aacgtaaact ttaggtgaat 3241 ctacattatt tccacatatt tttcttcaga tcatatatac acctaagctt tcatcgattt 3301 tcaataaata aaactgtgtt ctcggttgaa aaactttaaa tataaaaaca ttttatcaat 3361 ttaattatgt agattttttt aaaaattagt tgaaatcaca tgcaaatgaa aaggatataa 3421 atagattagt taaaaatttt atagcatgat aaagacattt taaataccta agtctaataa 3481 tgaagcttgt aacgccattt tgtataatgt agacgacata ttgtattagt tgtacacttg 3541 tacatcataa tattttctat taaaaactta cttcttcctg atttcttcca attggcttat 3601 ttctggttgt tcgatcaatt aaaaatggca attgtaaatg gtcaagaatc atgctgaaat 3661 acaaaagtat ttacttttta atgattgctc ttccaacgtg acctgaagta ttcgtattca 3721 atataaggcg atttggccct ttcttttcaa ttgtacatgg aaatggtacg attaataaac 3781 tagtcagatg tggtattctc attatcttta aaaattgagt catgtaaaat aagtattacg 3841 tcgaagttgc ataaaacacg aaaaagaaaa ggactgcaag acgttagagc agaacagctt 3901 atttcgtgca ctcagttgta atttttccga atcgacttga caacaacaaa aatacatacg 3961 acttcaaaaa agttaaaata ccgttttgtt atgatataat ttctcaagaa aacccgtttg 4021 tttattttcg tactagaaca cttcagctta tctcgtgcaa cgacttgtag aatagccgaa 4081 attattttaa ttgttttgtt ttttttacta agtttgtaac tttattatta acttgtaaaa 4141 cgctaaaatg ttgacaaata aattttagaa atttaataca tttatgtacc aaaatgcaaa 4201 aataaaatgt tttaacaaca atgaatataa attaatttca ctttaatttc tgaaatatta 4261 ttccttaaat acctgtattg ggtaattcct tattttccaa aaaataatta ttttatgaaa 4321 atttgatctt tgtttaatag taaatctaaa attagtaatt tcttattatt attttcaagg 4381 cctgataaat gtcaattttt aaatgtctgt acgaaataag ctctggaaat gtaatatacc 4441 ttacgggata ccaacttctg ttacaatatt ataatgaacg gggcttttta catgtgaaat 4501 tataagctaa gaaaacattg cttgcgattt tcaatatgtt ttgtattttt gaagttatgc 4561 cgatatcaaa aaatgaaatt atatattttt tcttttagtt tttttcgccg catgctaaaa 4621 ataaattggc agagtatgag tattcgtaaa agagaataca cagcttgtga gattttctcc 4681 attacttgat tatataataa tatataccat tctaatatga cgatataatt gacttaagta 4741 atatttgcaa aaaataccgc atatgatgga taaacaaaag ttgatcttat ataaaatact 4801 gtgatactaa attttactag tacttccagc atagctgcat tttatccatt cttaaatatt 4861 ctatgataag cagcagcaga taataatcaa tgactatata ggaaaacaaa aaatttttaa 4921 atgacatggc tcaatgcttg tctacattag attttcaaat aagaaatttt acaatatata 4981 tattaatacg tatgaaaagg tgggtataac attgggattc cttaaatatc attttaaatt 5041 gcaatgcaaa acaataggcc ctatgatgca agcataaata gatgatcttt agtcaactaa 5101 cttttattgc tgcaacataa caaaagtaca gaaaactgga gaacaaaaat atactggaac 5161 atatattaaa ttaaaatcaa taatatgtag gttagatgcg tcggtttatt caagacccag 5221 ctaagaaaag tttaatattt attaaaacaa ttatctaaga aagctgataa aactatgaga 5281 cattttttta atttaaatta gtttggggaa aagtaaatat ttacaatagt atgctagtca 5341 ttaaacgagt attctactct tgttatggaa tggctttgat tcttcacata ttaagttgat 5401 ttgcctaata attcgtatac atattatttt aaattataat tgagaactgt ttgcgaaaaa 5461 gaaatagaaa taccacagtt ttaaatggat attaattgta cttgcaagct tgacttacaa 5521 taatatagat aagaagtata caaagcaaaa ggttgctcaa attgcaaagc ttttggaaag 5581 tatttctctc tcttccggac aaaagtgtag tcctgcaaac atacataagt agatgcttat 5641 agaacacatc gggctatatt gtaacccgtt aaaacagtga taagaagatg cgttgagacc 5701 cgtaccacta tgatgtagac caaaacgagg caaagaaatg ttattaaaac cgtatagcag 5761 gaagataaac taatcaacca gtactacata catatgtacg ttgtcagcaa tccaacaaag 5821 atgtttggat tagtcgcata ggacaattac attatttgaa attgtacgaa tatttaagac 5881 aactaatgtc aaacttgggt taacttatat tctttagaat ctaaacatgg gcaacatcga 5941 aggtgaacac ttactattga tttgtagttt taaaatgttg aaagactata accaaatgaa 6001 ttatctaaga cacaaccggc aaaacctagt gccgttcaga gaaagggatg cacataaaaa 6061 tatgacaaat ctgctttcat ttatattttt aaacttcacg gcatctttaa atatcatctc 6121 tgagattaca gaatatatac ttactcatta acttcttatt ctgactacaa atgatataaa 6181 agacaaaaca cttaatatct aaatatacag aacaaacttg aatttaaaaa ctaggtttac 6241 acgttccaat tcgaacactt gaacttcact tatccacatt tcatcaagtt taccaagaca 6301 atttacatga cgattcattg aagtaccaaa gtatcaaaca atataatcgg aaaattaaaa 6361 atactgttaa atcgattatc tgtttttcga aaaagaatcc acattttcat ttaagcatcc 6421 acacattttt ttgattccac cgaaattttt taatttttaa ggataagtgg gtttataaaa 6481 gtcttaagca aatgcagaca tccaaaaatc gaatcgcttc tttagttttg aaaacagtat 6541 atgcataaca taatatataa aaatacacac ttatacgtaa atctttgttc ttgatcaaaa 6601 gttagtgcaa atatccaaac gaataaagca gaataataaa cacttaatat ctaaataaac 6661 agaacaaact ttaattaaaa gaaattaggt ttacactacg tacactaaaa cttcgcttat 6721 ctaaatttca ataagtacgt ttagataaac aaaacattaa gataccaaag tagtaacaat 6781 ctagtcggaa aatgagaaat catatttaaa tgcagtttat gttgcgacaa attaaatact 6841 tttttaggca ttgattgctt tcttggttct tcaaaatgtg taattttgga ggacaagtgg 6901 gttcaagaag gtcacaatcg aatgcagaca tcaaaaaata tgacattact ttaaacattt 6961 agttttaaaa caaacccgaa tgtaccatga aatcagtata tgcatagctt aatatataca 7021 aaatacacac ttatacgtaa aattttgttc ttcatcaaaa tttagtgcaa atagccagac 7081 gattaaaata gaataatagc aagcaacaac aacagtgttg gcggctacat taaaacaaat 7141 gtatcaatac tttaaaaatt ttaaaataga tcttacgatg gcctttttat tttataatcg 7201 actgtcagcc aataaaatga tccccacgtc attaaagccg aaa