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LOCUS XM_017151079 7283 bp mRNA linear INV 09-DEC-2024 (Adar), transcript variant X6, mRNA. ACCESSION XM_017151079 VERSION XM_017151079.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151079.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7283 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7283 /gene="Adar" /note="Adenosine deaminase acting on RNA; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:108063839" CDS 330..2360 /gene="Adar" /codon_start=1 /product="double-stranded RNA-specific editase Adar isoform X1" /protein_id="XP_017006568.1" /db_xref="GeneID:108063839" /translation="MLNSANNNSPQHPVSAPSDINMNGYNRKSPQKRRYEMPKYAVSP KKKTCKERIPQPKNTVAMLNELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQGR SKKVARIEAAATALRSFIQFKDGAVLSPLKPSGNLDFTSDEHLENGIENLSNKQLVEI IEPLMLTEKKSNLTSLEQPTLRLQMFCMSQNVSKSAITVDGQKKVPDKGPVMLLYELF NDVNFECINIDGAQNNCRFKMTVTINEKKFDGTGPSKKLAKNAAAKAALASLCNISYS PMVVPQKNVPLPIDDKSSSMELPQIHADTIGRLVLEKFMEVIKGQEAYSRRKVLAGIV MTENMNFCEAKVISVSTGTKCVSGEHMSVNGAVLNDSHAEIVSRRCLLKFLYAQLDLQ CNQATAYQSIFVRNTDGQYPYKLKSGVHFHLYINTAPCGDARIFSPHENDTGVDKHPN RKARGQLRTKIESGEGTIPVKSSDGIQTWDGVLQGQRLLTMSCSDKIARWNIVGIQGS LLSSIIEPVYLHSIVLGSLLHPEHMYRAVCGRIEKSIQGLPPPYHLNKPRLALVTSAE PRNQAKAPNFGINWTIGDTELEVVNSLTGRTIGGQVSRITKQAFFVKYGFLMTNLPGI LVRKVTTDYGQTKANVKDYQIAKLELFSAFKREDLGSWLKKPIEQDEFGLAE" misc_feature 498..686 /gene="Adar" /note="first double-stranded RNA binding motif of STRBP, ILF3, RED1, RED2 and similar proteins; Region: DSRM_STRBP_RED-like_rpt1; cd19865" /db_xref="CDD:380694" misc_feature order(498..500,507..512,519..524,528..530,570..575, 579..581,585..587,636..644,651..653) /gene="Adar" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:380694" misc_feature 951..>1091 /gene="Adar" /note="double-stranded RNA binding motif (DSRM) superfamily; Region: DSRM_SF; cl00054" /db_xref="CDD:444671" misc_feature 1230..2345 /gene="Adar" /note="tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase); Region: ADEAMc; smart00552" /db_xref="CDD:214718" polyA_site 7283 /gene="Adar" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcgcttccc cacctctaca gaactctaac cgacgaagtg tcattgtttt tttttctaat 61 gtaatggact taaatctttg cattcgaatc gagtgaatcc gggactgcag tctccccccc 121 gaacaccaaa cacccaatcg aattcgcggc cagaggagcg gatagagagc accgaggata 181 gaggaaacgc ttaaaattga tttgtttgtc cggccatgtc agtgtgtgtg tgacaagggc 241 tcgtccgtgt gcgtgcgcct gtcgctgtgt gtgtgtgctc tctttttttt cttcctatcg 301 agtgccgcta aattgaataa ttgcaagtca tgttaaacag cgcaaataac aattctcccc 361 agcacccggt gagtgcacca tctgatatca acatgaacgg atataaccgg aagtcgcctc 421 aaaaacggcg ctatgagatg ccaaaatatg ctgtatcacc aaaaaagaaa acctgcaagg 481 agcgcattcc gcagccaaag aatacggtgg caatgctgaa tgagttaaga catggactga 541 tttacaaatt ggagtcacag actggtccgg tgcacgcacc tttatttacg atatccgttg 601 aggtcgatgg acagaaatac ttgggccagg gtcgcagtaa aaaagttgca cgcatcgagg 661 cagctgccac agcactgcga agctttatac aattcaagga cggagccgtc ttgtcgccat 721 tgaagccatc gggcaacttg gactttacca gcgatgaaca tctagaaaat ggtattgaaa 781 atttgtccaa caaacaattg gtcgagatca ttgagccgtt gatgttgact gaaaagaaat 841 ccaaccttac ctcgcttgaa caacccacgt tgcgtcttca aatgttttgc atgagtcaga 901 atgtcagcaa gagtgccatc actgttgacg gtcaaaagaa ggttccggac aagggtcccg 961 taatgctgct ctacgaattg ttcaacgatg ttaattttga atgcattaat attgacggag 1021 ctcaaaacaa ttgtcgcttc aagatgaccg tcacgattaa cgaaaagaag ttcgatggaa 1081 caggtccttc caaaaagctg gcgaaaaatg ctgcggccaa agcggcactt gcctcgttgt 1141 gcaacatttc ctacagtcca atggtggtgc cacaaaagaa cgtacccctt ccaatcgacg 1201 acaagtcgtc atccatggag ttgccgcaga tacatgccga tacgattgga cgcctggttt 1261 tggagaagtt catggaagta atcaagggcc aggaggccta ctcgcgtcga aaggtattgg 1321 cgggcattgt tatgactgaa aacatgaatt tttgtgaagc caaagttatt tcagtctcga 1381 cgggcaccaa gtgtgtcagc ggcgagcata tgagtgtgaa cggagctgtc ctgaacgatt 1441 cccatgccga aatagtgtct aggcgttgtc tcctcaagtt cttgtatgca cagctggatc 1501 ttcagtgcaa tcaggccaca gcatatcagt cgattttcgt gaggaatact gatgggcaat 1561 acccttataa actaaaatcc ggggtacatt tccatttgta tataaataca gcaccttgtg 1621 gggatgcacg gatatttagt cctcacgaaa acgacactgg tgttgataaa catccaaata 1681 gaaaagctcg cggccagttg cgtacaaaaa tcgagtccgg tgaggggacg attccagtca 1741 aaagcagtga tggaatacag acgtgggatg gcgtgctgca gggccaacgc ttgctgacaa 1801 tgtcgtgctc ggacaaaatt gcacgatgga acatcgtggg tatacaaggc tccttgttgt 1861 cttccataat tgaaccagtg tacctgcatt cgattgtgct gggcagtttg ctgcacccag 1921 agcacatgta ccgtgcagtg tgcggccgga tcgaaaagtc cattcaaggt ctgccgccgc 1981 cgtatcattt gaataagccc cggctcgcat tggtcacttc ggccgagccg cggaatcagg 2041 ccaaggctcc aaactttggt atcaattgga ccattggaga taccgagttg gaagtggtga 2101 actcgcttac tggtcgaaca atcggcggtc aagtgtctcg catcacgaaa caggcgtttt 2161 ttgttaaata tggattttta atgacaaact taccaggtat tttagtccgc aaagtaacca 2221 cagactacgg gcaaaccaaa gctaacgtaa aggactatca gatcgcaaag ctagaattgt 2281 tttcggcatt caaacgtgaa gaccttggca gctggctgaa gaaacccatt gaacaagacg 2341 agttcggtct tgccgaatga ctgcactcag cactattata taatttaaaa aaagacaaca 2401 gtaacggcaa gcaattaata gaattagatg acatagattt tatgacaaac tcttatgtag 2461 aatgcaaatt aagttgggtg caaagacatc gatatgaaat tcatacgatt gagaacctgc 2521 caacattgcg tacccattgc aacagcaagc acaaagatgc ttatgctcga aatatgaaaa 2581 aaggctctag aatatttata gaatagaatg tagtttttat gctggaactg agtaaaggag 2641 tattatggcg tttttttttg aatcaattca ttttcaaatt ggttaaggca atctctttcg 2701 catctaagtt tgccacacgt ttcatttttt aaatcgaaat aaaacgattt cgccccaacc 2761 acactgttat aattttcaag tgagttgggt tgtttaagtg cccatatttt acaaaaatgt 2821 ggtaataaat aatgttgcaa gacaggtaaa acaagaaggg aagcccttgc agatcgttcc 2881 tatggcagct gtatgaaata gcactccaga gtttctgtat tatattgttt ttcctttatt 2941 ttccgatcgt tcatataata gtcatccatt ttttctttta atttaactcg ttattctaaa 3001 atatttttaa tattccctaa aaagaagaaa taatgtttaa aaacaacgaa tttataattt 3061 ttctctatta attttccgtt ttgatgtccc tctgcaaggg taaaaaacta taaaaccaac 3121 aagtaaaatc tataaataac aataaccaaa acagaaatct ctagactttg ttctgttatc 3181 gattaagcaa tgtattttgt taagtaatgt tatttgcaac gacataataa ttataataaa 3241 gtcacgctta ctataagcat aacgtaaact ttaggtgaat ctacattatt tccacatatt 3301 tttcttcaga tcatatatac acctaagctt tcatcgattt tcaataaata aaactgtgtt 3361 ctcggttgaa aaactttaaa tataaaaaca ttttatcaat ttaattatgt agattttttt 3421 aaaaattagt tgaaatcaca tgcaaatgaa aaggatataa atagattagt taaaaatttt 3481 atagcatgat aaagacattt taaataccta agtctaataa tgaagcttgt aacgccattt 3541 tgtataatgt agacgacata ttgtattagt tgtacacttg tacatcataa tattttctat 3601 taaaaactta cttcttcctg atttcttcca attggcttat ttctggttgt tcgatcaatt 3661 aaaaatggca attgtaaatg gtcaagaatc atgctgaaat acaaaagtat ttacttttta 3721 atgattgctc ttccaacgtg acctgaagta ttcgtattca atataaggcg atttggccct 3781 ttcttttcaa ttgtacatgg aaatggtacg attaataaac tagtcagatg tggtattctc 3841 attatcttta aaaattgagt catgtaaaat aagtattacg tcgaagttgc ataaaacacg 3901 aaaaagaaaa ggactgcaag acgttagagc agaacagctt atttcgtgca ctcagttgta 3961 atttttccga atcgacttga caacaacaaa aatacatacg acttcaaaaa agttaaaata 4021 ccgttttgtt atgatataat ttctcaagaa aacccgtttg tttattttcg tactagaaca 4081 cttcagctta tctcgtgcaa cgacttgtag aatagccgaa attattttaa ttgttttgtt 4141 ttttttacta agtttgtaac tttattatta acttgtaaaa cgctaaaatg ttgacaaata 4201 aattttagaa atttaataca tttatgtacc aaaatgcaaa aataaaatgt tttaacaaca 4261 atgaatataa attaatttca ctttaatttc tgaaatatta ttccttaaat acctgtattg 4321 ggtaattcct tattttccaa aaaataatta ttttatgaaa atttgatctt tgtttaatag 4381 taaatctaaa attagtaatt tcttattatt attttcaagg cctgataaat gtcaattttt 4441 aaatgtctgt acgaaataag ctctggaaat gtaatatacc ttacgggata ccaacttctg 4501 ttacaatatt ataatgaacg gggcttttta catgtgaaat tataagctaa gaaaacattg 4561 cttgcgattt tcaatatgtt ttgtattttt gaagttatgc cgatatcaaa aaatgaaatt 4621 atatattttt tcttttagtt tttttcgccg catgctaaaa ataaattggc agagtatgag 4681 tattcgtaaa agagaataca cagcttgtga gattttctcc attacttgat tatataataa 4741 tatataccat tctaatatga cgatataatt gacttaagta atatttgcaa aaaataccgc 4801 atatgatgga taaacaaaag ttgatcttat ataaaatact gtgatactaa attttactag 4861 tacttccagc atagctgcat tttatccatt cttaaatatt ctatgataag cagcagcaga 4921 taataatcaa tgactatata ggaaaacaaa aaatttttaa atgacatggc tcaatgcttg 4981 tctacattag attttcaaat aagaaatttt acaatatata tattaatacg tatgaaaagg 5041 tgggtataac attgggattc cttaaatatc attttaaatt gcaatgcaaa acaataggcc 5101 ctatgatgca agcataaata gatgatcttt agtcaactaa cttttattgc tgcaacataa 5161 caaaagtaca gaaaactgga gaacaaaaat atactggaac atatattaaa ttaaaatcaa 5221 taatatgtag gttagatgcg tcggtttatt caagacccag ctaagaaaag tttaatattt 5281 attaaaacaa ttatctaaga aagctgataa aactatgaga cattttttta atttaaatta 5341 gtttggggaa aagtaaatat ttacaatagt atgctagtca ttaaacgagt attctactct 5401 tgttatggaa tggctttgat tcttcacata ttaagttgat ttgcctaata attcgtatac 5461 atattatttt aaattataat tgagaactgt ttgcgaaaaa gaaatagaaa taccacagtt 5521 ttaaatggat attaattgta cttgcaagct tgacttacaa taatatagat aagaagtata 5581 caaagcaaaa ggttgctcaa attgcaaagc ttttggaaag tatttctctc tcttccggac 5641 aaaagtgtag tcctgcaaac atacataagt agatgcttat agaacacatc gggctatatt 5701 gtaacccgtt aaaacagtga taagaagatg cgttgagacc cgtaccacta tgatgtagac 5761 caaaacgagg caaagaaatg ttattaaaac cgtatagcag gaagataaac taatcaacca 5821 gtactacata catatgtacg ttgtcagcaa tccaacaaag atgtttggat tagtcgcata 5881 ggacaattac attatttgaa attgtacgaa tatttaagac aactaatgtc aaacttgggt 5941 taacttatat tctttagaat ctaaacatgg gcaacatcga aggtgaacac ttactattga 6001 tttgtagttt taaaatgttg aaagactata accaaatgaa ttatctaaga cacaaccggc 6061 aaaacctagt gccgttcaga gaaagggatg cacataaaaa tatgacaaat ctgctttcat 6121 ttatattttt aaacttcacg gcatctttaa atatcatctc tgagattaca gaatatatac 6181 ttactcatta acttcttatt ctgactacaa atgatataaa agacaaaaca cttaatatct 6241 aaatatacag aacaaacttg aatttaaaaa ctaggtttac acgttccaat tcgaacactt 6301 gaacttcact tatccacatt tcatcaagtt taccaagaca atttacatga cgattcattg 6361 aagtaccaaa gtatcaaaca atataatcgg aaaattaaaa atactgttaa atcgattatc 6421 tgtttttcga aaaagaatcc acattttcat ttaagcatcc acacattttt ttgattccac 6481 cgaaattttt taatttttaa ggataagtgg gtttataaaa gtcttaagca aatgcagaca 6541 tccaaaaatc gaatcgcttc tttagttttg aaaacagtat atgcataaca taatatataa 6601 aaatacacac ttatacgtaa atctttgttc ttgatcaaaa gttagtgcaa atatccaaac 6661 gaataaagca gaataataaa cacttaatat ctaaataaac agaacaaact ttaattaaaa 6721 gaaattaggt ttacactacg tacactaaaa cttcgcttat ctaaatttca ataagtacgt 6781 ttagataaac aaaacattaa gataccaaag tagtaacaat ctagtcggaa aatgagaaat 6841 catatttaaa tgcagtttat gttgcgacaa attaaatact tttttaggca ttgattgctt 6901 tcttggttct tcaaaatgtg taattttgga ggacaagtgg gttcaagaag gtcacaatcg 6961 aatgcagaca tcaaaaaata tgacattact ttaaacattt agttttaaaa caaacccgaa 7021 tgtaccatga aatcagtata tgcatagctt aatatataca aaatacacac ttatacgtaa 7081 aattttgttc ttcatcaaaa tttagtgcaa atagccagac gattaaaata gaataatagc 7141 aagcaacaac aacagtgttg gcggctacat taaaacaaat gtatcaatac tttaaaaatt 7201 ttaaaataga tcttacgatg gcctttttat tttataatcg actgtcagcc aataaaatga 7261 tccccacgtc attaaagccg aaa