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LOCUS XM_017151075 7330 bp mRNA linear INV 09-DEC-2024 (Adar), transcript variant X5, mRNA. ACCESSION XM_017151075 VERSION XM_017151075.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151075.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7330 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7330 /gene="Adar" /note="Adenosine deaminase acting on RNA; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:108063839" CDS 377..2407 /gene="Adar" /codon_start=1 /product="double-stranded RNA-specific editase Adar isoform X1" /protein_id="XP_017006564.1" /db_xref="GeneID:108063839" /translation="MLNSANNNSPQHPVSAPSDINMNGYNRKSPQKRRYEMPKYAVSP KKKTCKERIPQPKNTVAMLNELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQGR SKKVARIEAAATALRSFIQFKDGAVLSPLKPSGNLDFTSDEHLENGIENLSNKQLVEI IEPLMLTEKKSNLTSLEQPTLRLQMFCMSQNVSKSAITVDGQKKVPDKGPVMLLYELF NDVNFECINIDGAQNNCRFKMTVTINEKKFDGTGPSKKLAKNAAAKAALASLCNISYS PMVVPQKNVPLPIDDKSSSMELPQIHADTIGRLVLEKFMEVIKGQEAYSRRKVLAGIV MTENMNFCEAKVISVSTGTKCVSGEHMSVNGAVLNDSHAEIVSRRCLLKFLYAQLDLQ CNQATAYQSIFVRNTDGQYPYKLKSGVHFHLYINTAPCGDARIFSPHENDTGVDKHPN RKARGQLRTKIESGEGTIPVKSSDGIQTWDGVLQGQRLLTMSCSDKIARWNIVGIQGS LLSSIIEPVYLHSIVLGSLLHPEHMYRAVCGRIEKSIQGLPPPYHLNKPRLALVTSAE PRNQAKAPNFGINWTIGDTELEVVNSLTGRTIGGQVSRITKQAFFVKYGFLMTNLPGI LVRKVTTDYGQTKANVKDYQIAKLELFSAFKREDLGSWLKKPIEQDEFGLAE" misc_feature 545..733 /gene="Adar" /note="first double-stranded RNA binding motif of STRBP, ILF3, RED1, RED2 and similar proteins; Region: DSRM_STRBP_RED-like_rpt1; cd19865" /db_xref="CDD:380694" misc_feature order(545..547,554..559,566..571,575..577,617..622, 626..628,632..634,683..691,698..700) /gene="Adar" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:380694" misc_feature 998..>1138 /gene="Adar" /note="double-stranded RNA binding motif (DSRM) superfamily; Region: DSRM_SF; cl00054" /db_xref="CDD:444671" misc_feature 1277..2392 /gene="Adar" /note="tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase); Region: ADEAMc; smart00552" /db_xref="CDD:214718" polyA_site 7330 /gene="Adar" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcgcttccc cacctctaca gaactctaac cgacgaagtg tcattgtttt tttttctaat 61 gtaatggact taaatctttg cattcgaatc gagtgaatcc gggactgcag tctccccccc 121 gaacaccaaa cacccaatcg aattcgcggc cagaggagcg gatagagagc accgaggata 181 gaggaaacgc ttaaaattga tttgtttgtc cggccatgtc agtgtgtgtg tgacaagggc 241 tcgtccgtgt gcgtgcgcct gtcgctgtgt gtgtgtgctc tctttttttt cttcctatcg 301 agtgccgcta aattgaataa ttgcacacaa cagatttcac caagatataa agtgcgtgaa 361 attcgattcc agagtcatgt taaacagcgc aaataacaat tctccccagc acccggtgag 421 tgcaccatct gatatcaaca tgaacggata taaccggaag tcgcctcaaa aacggcgcta 481 tgagatgcca aaatatgctg tatcaccaaa aaagaaaacc tgcaaggagc gcattccgca 541 gccaaagaat acggtggcaa tgctgaatga gttaagacat ggactgattt acaaattgga 601 gtcacagact ggtccggtgc acgcaccttt atttacgata tccgttgagg tcgatggaca 661 gaaatacttg ggccagggtc gcagtaaaaa agttgcacgc atcgaggcag ctgccacagc 721 actgcgaagc tttatacaat tcaaggacgg agccgtcttg tcgccattga agccatcggg 781 caacttggac tttaccagcg atgaacatct agaaaatggt attgaaaatt tgtccaacaa 841 acaattggtc gagatcattg agccgttgat gttgactgaa aagaaatcca accttacctc 901 gcttgaacaa cccacgttgc gtcttcaaat gttttgcatg agtcagaatg tcagcaagag 961 tgccatcact gttgacggtc aaaagaaggt tccggacaag ggtcccgtaa tgctgctcta 1021 cgaattgttc aacgatgtta attttgaatg cattaatatt gacggagctc aaaacaattg 1081 tcgcttcaag atgaccgtca cgattaacga aaagaagttc gatggaacag gtccttccaa 1141 aaagctggcg aaaaatgctg cggccaaagc ggcacttgcc tcgttgtgca acatttccta 1201 cagtccaatg gtggtgccac aaaagaacgt accccttcca atcgacgaca agtcgtcatc 1261 catggagttg ccgcagatac atgccgatac gattggacgc ctggttttgg agaagttcat 1321 ggaagtaatc aagggccagg aggcctactc gcgtcgaaag gtattggcgg gcattgttat 1381 gactgaaaac atgaattttt gtgaagccaa agttatttca gtctcgacgg gcaccaagtg 1441 tgtcagcggc gagcatatga gtgtgaacgg agctgtcctg aacgattccc atgccgaaat 1501 agtgtctagg cgttgtctcc tcaagttctt gtatgcacag ctggatcttc agtgcaatca 1561 ggccacagca tatcagtcga ttttcgtgag gaatactgat gggcaatacc cttataaact 1621 aaaatccggg gtacatttcc atttgtatat aaatacagca ccttgtgggg atgcacggat 1681 atttagtcct cacgaaaacg acactggtgt tgataaacat ccaaatagaa aagctcgcgg 1741 ccagttgcgt acaaaaatcg agtccggtga ggggacgatt ccagtcaaaa gcagtgatgg 1801 aatacagacg tgggatggcg tgctgcaggg ccaacgcttg ctgacaatgt cgtgctcgga 1861 caaaattgca cgatggaaca tcgtgggtat acaaggctcc ttgttgtctt ccataattga 1921 accagtgtac ctgcattcga ttgtgctggg cagtttgctg cacccagagc acatgtaccg 1981 tgcagtgtgc ggccggatcg aaaagtccat tcaaggtctg ccgccgccgt atcatttgaa 2041 taagccccgg ctcgcattgg tcacttcggc cgagccgcgg aatcaggcca aggctccaaa 2101 ctttggtatc aattggacca ttggagatac cgagttggaa gtggtgaact cgcttactgg 2161 tcgaacaatc ggcggtcaag tgtctcgcat cacgaaacag gcgttttttg ttaaatatgg 2221 atttttaatg acaaacttac caggtatttt agtccgcaaa gtaaccacag actacgggca 2281 aaccaaagct aacgtaaagg actatcagat cgcaaagcta gaattgtttt cggcattcaa 2341 acgtgaagac cttggcagct ggctgaagaa acccattgaa caagacgagt tcggtcttgc 2401 cgaatgactg cactcagcac tattatataa tttaaaaaaa gacaacagta acggcaagca 2461 attaatagaa ttagatgaca tagattttat gacaaactct tatgtagaat gcaaattaag 2521 ttgggtgcaa agacatcgat atgaaattca tacgattgag aacctgccaa cattgcgtac 2581 ccattgcaac agcaagcaca aagatgctta tgctcgaaat atgaaaaaag gctctagaat 2641 atttatagaa tagaatgtag tttttatgct ggaactgagt aaaggagtat tatggcgttt 2701 ttttttgaat caattcattt tcaaattggt taaggcaatc tctttcgcat ctaagtttgc 2761 cacacgtttc attttttaaa tcgaaataaa acgatttcgc cccaaccaca ctgttataat 2821 tttcaagtga gttgggttgt ttaagtgccc atattttaca aaaatgtggt aataaataat 2881 gttgcaagac aggtaaaaca agaagggaag cccttgcaga tcgttcctat ggcagctgta 2941 tgaaatagca ctccagagtt tctgtattat attgtttttc ctttattttc cgatcgttca 3001 tataatagtc atccattttt tcttttaatt taactcgtta ttctaaaata tttttaatat 3061 tccctaaaaa gaagaaataa tgtttaaaaa caacgaattt ataatttttc tctattaatt 3121 ttccgttttg atgtccctct gcaagggtaa aaaactataa aaccaacaag taaaatctat 3181 aaataacaat aaccaaaaca gaaatctcta gactttgttc tgttatcgat taagcaatgt 3241 attttgttaa gtaatgttat ttgcaacgac ataataatta taataaagtc acgcttacta 3301 taagcataac gtaaacttta ggtgaatcta cattatttcc acatattttt cttcagatca 3361 tatatacacc taagctttca tcgattttca ataaataaaa ctgtgttctc ggttgaaaaa 3421 ctttaaatat aaaaacattt tatcaattta attatgtaga tttttttaaa aattagttga 3481 aatcacatgc aaatgaaaag gatataaata gattagttaa aaattttata gcatgataaa 3541 gacattttaa atacctaagt ctaataatga agcttgtaac gccattttgt ataatgtaga 3601 cgacatattg tattagttgt acacttgtac atcataatat tttctattaa aaacttactt 3661 cttcctgatt tcttccaatt ggcttatttc tggttgttcg atcaattaaa aatggcaatt 3721 gtaaatggtc aagaatcatg ctgaaataca aaagtattta ctttttaatg attgctcttc 3781 caacgtgacc tgaagtattc gtattcaata taaggcgatt tggccctttc ttttcaattg 3841 tacatggaaa tggtacgatt aataaactag tcagatgtgg tattctcatt atctttaaaa 3901 attgagtcat gtaaaataag tattacgtcg aagttgcata aaacacgaaa aagaaaagga 3961 ctgcaagacg ttagagcaga acagcttatt tcgtgcactc agttgtaatt tttccgaatc 4021 gacttgacaa caacaaaaat acatacgact tcaaaaaagt taaaataccg ttttgttatg 4081 atataatttc tcaagaaaac ccgtttgttt attttcgtac tagaacactt cagcttatct 4141 cgtgcaacga cttgtagaat agccgaaatt attttaattg ttttgttttt tttactaagt 4201 ttgtaacttt attattaact tgtaaaacgc taaaatgttg acaaataaat tttagaaatt 4261 taatacattt atgtaccaaa atgcaaaaat aaaatgtttt aacaacaatg aatataaatt 4321 aatttcactt taatttctga aatattattc cttaaatacc tgtattgggt aattccttat 4381 tttccaaaaa ataattattt tatgaaaatt tgatctttgt ttaatagtaa atctaaaatt 4441 agtaatttct tattattatt ttcaaggcct gataaatgtc aatttttaaa tgtctgtacg 4501 aaataagctc tggaaatgta atatacctta cgggatacca acttctgtta caatattata 4561 atgaacgggg ctttttacat gtgaaattat aagctaagaa aacattgctt gcgattttca 4621 atatgttttg tatttttgaa gttatgccga tatcaaaaaa tgaaattata tattttttct 4681 tttagttttt ttcgccgcat gctaaaaata aattggcaga gtatgagtat tcgtaaaaga 4741 gaatacacag cttgtgagat tttctccatt acttgattat ataataatat ataccattct 4801 aatatgacga tataattgac ttaagtaata tttgcaaaaa ataccgcata tgatggataa 4861 acaaaagttg atcttatata aaatactgtg atactaaatt ttactagtac ttccagcata 4921 gctgcatttt atccattctt aaatattcta tgataagcag cagcagataa taatcaatga 4981 ctatatagga aaacaaaaaa tttttaaatg acatggctca atgcttgtct acattagatt 5041 ttcaaataag aaattttaca atatatatat taatacgtat gaaaaggtgg gtataacatt 5101 gggattcctt aaatatcatt ttaaattgca atgcaaaaca ataggcccta tgatgcaagc 5161 ataaatagat gatctttagt caactaactt ttattgctgc aacataacaa aagtacagaa 5221 aactggagaa caaaaatata ctggaacata tattaaatta aaatcaataa tatgtaggtt 5281 agatgcgtcg gtttattcaa gacccagcta agaaaagttt aatatttatt aaaacaatta 5341 tctaagaaag ctgataaaac tatgagacat ttttttaatt taaattagtt tggggaaaag 5401 taaatattta caatagtatg ctagtcatta aacgagtatt ctactcttgt tatggaatgg 5461 ctttgattct tcacatatta agttgatttg cctaataatt cgtatacata ttattttaaa 5521 ttataattga gaactgtttg cgaaaaagaa atagaaatac cacagtttta aatggatatt 5581 aattgtactt gcaagcttga cttacaataa tatagataag aagtatacaa agcaaaaggt 5641 tgctcaaatt gcaaagcttt tggaaagtat ttctctctct tccggacaaa agtgtagtcc 5701 tgcaaacata cataagtaga tgcttataga acacatcggg ctatattgta acccgttaaa 5761 acagtgataa gaagatgcgt tgagacccgt accactatga tgtagaccaa aacgaggcaa 5821 agaaatgtta ttaaaaccgt atagcaggaa gataaactaa tcaaccagta ctacatacat 5881 atgtacgttg tcagcaatcc aacaaagatg tttggattag tcgcatagga caattacatt 5941 atttgaaatt gtacgaatat ttaagacaac taatgtcaaa cttgggttaa cttatattct 6001 ttagaatcta aacatgggca acatcgaagg tgaacactta ctattgattt gtagttttaa 6061 aatgttgaaa gactataacc aaatgaatta tctaagacac aaccggcaaa acctagtgcc 6121 gttcagagaa agggatgcac ataaaaatat gacaaatctg ctttcattta tatttttaaa 6181 cttcacggca tctttaaata tcatctctga gattacagaa tatatactta ctcattaact 6241 tcttattctg actacaaatg atataaaaga caaaacactt aatatctaaa tatacagaac 6301 aaacttgaat ttaaaaacta ggtttacacg ttccaattcg aacacttgaa cttcacttat 6361 ccacatttca tcaagtttac caagacaatt tacatgacga ttcattgaag taccaaagta 6421 tcaaacaata taatcggaaa attaaaaata ctgttaaatc gattatctgt ttttcgaaaa 6481 agaatccaca ttttcattta agcatccaca catttttttg attccaccga aattttttaa 6541 tttttaagga taagtgggtt tataaaagtc ttaagcaaat gcagacatcc aaaaatcgaa 6601 tcgcttcttt agttttgaaa acagtatatg cataacataa tatataaaaa tacacactta 6661 tacgtaaatc tttgttcttg atcaaaagtt agtgcaaata tccaaacgaa taaagcagaa 6721 taataaacac ttaatatcta aataaacaga acaaacttta attaaaagaa attaggttta 6781 cactacgtac actaaaactt cgcttatcta aatttcaata agtacgttta gataaacaaa 6841 acattaagat accaaagtag taacaatcta gtcggaaaat gagaaatcat atttaaatgc 6901 agtttatgtt gcgacaaatt aaatactttt ttaggcattg attgctttct tggttcttca 6961 aaatgtgtaa ttttggagga caagtgggtt caagaaggtc acaatcgaat gcagacatca 7021 aaaaatatga cattacttta aacatttagt tttaaaacaa acccgaatgt accatgaaat 7081 cagtatatgc atagcttaat atatacaaaa tacacactta tacgtaaaat tttgttcttc 7141 atcaaaattt agtgcaaata gccagacgat taaaatagaa taatagcaag caacaacaac 7201 agtgttggcg gctacattaa aacaaatgta tcaatacttt aaaaatttta aaatagatct 7261 tacgatggcc tttttatttt ataatcgact gtcagccaat aaaatgatcc ccacgtcatt 7321 aaagccgaaa