Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017151074 7411 bp mRNA linear INV 09-DEC-2024 (Adar), transcript variant X3, mRNA. ACCESSION XM_017151074 VERSION XM_017151074.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151074.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7411 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7411 /gene="Adar" /note="Adenosine deaminase acting on RNA; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:108063839" CDS 458..2488 /gene="Adar" /codon_start=1 /product="double-stranded RNA-specific editase Adar isoform X1" /protein_id="XP_017006563.1" /db_xref="GeneID:108063839" /translation="MLNSANNNSPQHPVSAPSDINMNGYNRKSPQKRRYEMPKYAVSP KKKTCKERIPQPKNTVAMLNELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQGR SKKVARIEAAATALRSFIQFKDGAVLSPLKPSGNLDFTSDEHLENGIENLSNKQLVEI IEPLMLTEKKSNLTSLEQPTLRLQMFCMSQNVSKSAITVDGQKKVPDKGPVMLLYELF NDVNFECINIDGAQNNCRFKMTVTINEKKFDGTGPSKKLAKNAAAKAALASLCNISYS PMVVPQKNVPLPIDDKSSSMELPQIHADTIGRLVLEKFMEVIKGQEAYSRRKVLAGIV MTENMNFCEAKVISVSTGTKCVSGEHMSVNGAVLNDSHAEIVSRRCLLKFLYAQLDLQ CNQATAYQSIFVRNTDGQYPYKLKSGVHFHLYINTAPCGDARIFSPHENDTGVDKHPN RKARGQLRTKIESGEGTIPVKSSDGIQTWDGVLQGQRLLTMSCSDKIARWNIVGIQGS LLSSIIEPVYLHSIVLGSLLHPEHMYRAVCGRIEKSIQGLPPPYHLNKPRLALVTSAE PRNQAKAPNFGINWTIGDTELEVVNSLTGRTIGGQVSRITKQAFFVKYGFLMTNLPGI LVRKVTTDYGQTKANVKDYQIAKLELFSAFKREDLGSWLKKPIEQDEFGLAE" misc_feature 626..814 /gene="Adar" /note="first double-stranded RNA binding motif of STRBP, ILF3, RED1, RED2 and similar proteins; Region: DSRM_STRBP_RED-like_rpt1; cd19865" /db_xref="CDD:380694" misc_feature order(626..628,635..640,647..652,656..658,698..703, 707..709,713..715,764..772,779..781) /gene="Adar" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:380694" misc_feature 1079..>1219 /gene="Adar" /note="double-stranded RNA binding motif (DSRM) superfamily; Region: DSRM_SF; cl00054" /db_xref="CDD:444671" misc_feature 1358..2473 /gene="Adar" /note="tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase); Region: ADEAMc; smart00552" /db_xref="CDD:214718" polyA_site 7411 /gene="Adar" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcgcttccc cacctctaca gaactctaac cgacgaagtg tcattgtttt tttttctaat 61 gtaatggact taaatctttg cattcgaatc gagtgaatcc gggactgcag tctccccccc 121 gaacaccaaa cacccaatcg aattcgcggc cagaggagcg gatagagagc accgaggata 181 gaggaaacgc ttaaaattga tttgtttgtc cggccatgtc agtgtgtgtg tgacaagggc 241 tcgtccgtgt gcgtgcgcct gtcgctgtgt gtgtgtgctc tctttttttt cttcctatcg 301 agtgccgcta aattgaataa ttgcatttga tatcggtttg gtgttacttt tctgaatata 361 ttggtattat catcatcata ctcctacaaa tcaccatata aattagcaca acagatttca 421 ccaagatata aagtgcgtga aattcgattc cagagtcatg ttaaacagcg caaataacaa 481 ttctccccag cacccggtga gtgcaccatc tgatatcaac atgaacggat ataaccggaa 541 gtcgcctcaa aaacggcgct atgagatgcc aaaatatgct gtatcaccaa aaaagaaaac 601 ctgcaaggag cgcattccgc agccaaagaa tacggtggca atgctgaatg agttaagaca 661 tggactgatt tacaaattgg agtcacagac tggtccggtg cacgcacctt tatttacgat 721 atccgttgag gtcgatggac agaaatactt gggccagggt cgcagtaaaa aagttgcacg 781 catcgaggca gctgccacag cactgcgaag ctttatacaa ttcaaggacg gagccgtctt 841 gtcgccattg aagccatcgg gcaacttgga ctttaccagc gatgaacatc tagaaaatgg 901 tattgaaaat ttgtccaaca aacaattggt cgagatcatt gagccgttga tgttgactga 961 aaagaaatcc aaccttacct cgcttgaaca acccacgttg cgtcttcaaa tgttttgcat 1021 gagtcagaat gtcagcaaga gtgccatcac tgttgacggt caaaagaagg ttccggacaa 1081 gggtcccgta atgctgctct acgaattgtt caacgatgtt aattttgaat gcattaatat 1141 tgacggagct caaaacaatt gtcgcttcaa gatgaccgtc acgattaacg aaaagaagtt 1201 cgatggaaca ggtccttcca aaaagctggc gaaaaatgct gcggccaaag cggcacttgc 1261 ctcgttgtgc aacatttcct acagtccaat ggtggtgcca caaaagaacg taccccttcc 1321 aatcgacgac aagtcgtcat ccatggagtt gccgcagata catgccgata cgattggacg 1381 cctggttttg gagaagttca tggaagtaat caagggccag gaggcctact cgcgtcgaaa 1441 ggtattggcg ggcattgtta tgactgaaaa catgaatttt tgtgaagcca aagttatttc 1501 agtctcgacg ggcaccaagt gtgtcagcgg cgagcatatg agtgtgaacg gagctgtcct 1561 gaacgattcc catgccgaaa tagtgtctag gcgttgtctc ctcaagttct tgtatgcaca 1621 gctggatctt cagtgcaatc aggccacagc atatcagtcg attttcgtga ggaatactga 1681 tgggcaatac ccttataaac taaaatccgg ggtacatttc catttgtata taaatacagc 1741 accttgtggg gatgcacgga tatttagtcc tcacgaaaac gacactggtg ttgataaaca 1801 tccaaataga aaagctcgcg gccagttgcg tacaaaaatc gagtccggtg aggggacgat 1861 tccagtcaaa agcagtgatg gaatacagac gtgggatggc gtgctgcagg gccaacgctt 1921 gctgacaatg tcgtgctcgg acaaaattgc acgatggaac atcgtgggta tacaaggctc 1981 cttgttgtct tccataattg aaccagtgta cctgcattcg attgtgctgg gcagtttgct 2041 gcacccagag cacatgtacc gtgcagtgtg cggccggatc gaaaagtcca ttcaaggtct 2101 gccgccgccg tatcatttga ataagccccg gctcgcattg gtcacttcgg ccgagccgcg 2161 gaatcaggcc aaggctccaa actttggtat caattggacc attggagata ccgagttgga 2221 agtggtgaac tcgcttactg gtcgaacaat cggcggtcaa gtgtctcgca tcacgaaaca 2281 ggcgtttttt gttaaatatg gatttttaat gacaaactta ccaggtattt tagtccgcaa 2341 agtaaccaca gactacgggc aaaccaaagc taacgtaaag gactatcaga tcgcaaagct 2401 agaattgttt tcggcattca aacgtgaaga ccttggcagc tggctgaaga aacccattga 2461 acaagacgag ttcggtcttg ccgaatgact gcactcagca ctattatata atttaaaaaa 2521 agacaacagt aacggcaagc aattaataga attagatgac atagatttta tgacaaactc 2581 ttatgtagaa tgcaaattaa gttgggtgca aagacatcga tatgaaattc atacgattga 2641 gaacctgcca acattgcgta cccattgcaa cagcaagcac aaagatgctt atgctcgaaa 2701 tatgaaaaaa ggctctagaa tatttataga atagaatgta gtttttatgc tggaactgag 2761 taaaggagta ttatggcgtt tttttttgaa tcaattcatt ttcaaattgg ttaaggcaat 2821 ctctttcgca tctaagtttg ccacacgttt cattttttaa atcgaaataa aacgatttcg 2881 ccccaaccac actgttataa ttttcaagtg agttgggttg tttaagtgcc catattttac 2941 aaaaatgtgg taataaataa tgttgcaaga caggtaaaac aagaagggaa gcccttgcag 3001 atcgttccta tggcagctgt atgaaatagc actccagagt ttctgtatta tattgttttt 3061 cctttatttt ccgatcgttc atataatagt catccatttt ttcttttaat ttaactcgtt 3121 attctaaaat atttttaata ttccctaaaa agaagaaata atgtttaaaa acaacgaatt 3181 tataattttt ctctattaat tttccgtttt gatgtccctc tgcaagggta aaaaactata 3241 aaaccaacaa gtaaaatcta taaataacaa taaccaaaac agaaatctct agactttgtt 3301 ctgttatcga ttaagcaatg tattttgtta agtaatgtta tttgcaacga cataataatt 3361 ataataaagt cacgcttact ataagcataa cgtaaacttt aggtgaatct acattatttc 3421 cacatatttt tcttcagatc atatatacac ctaagctttc atcgattttc aataaataaa 3481 actgtgttct cggttgaaaa actttaaata taaaaacatt ttatcaattt aattatgtag 3541 atttttttaa aaattagttg aaatcacatg caaatgaaaa ggatataaat agattagtta 3601 aaaattttat agcatgataa agacatttta aatacctaag tctaataatg aagcttgtaa 3661 cgccattttg tataatgtag acgacatatt gtattagttg tacacttgta catcataata 3721 ttttctatta aaaacttact tcttcctgat ttcttccaat tggcttattt ctggttgttc 3781 gatcaattaa aaatggcaat tgtaaatggt caagaatcat gctgaaatac aaaagtattt 3841 actttttaat gattgctctt ccaacgtgac ctgaagtatt cgtattcaat ataaggcgat 3901 ttggcccttt cttttcaatt gtacatggaa atggtacgat taataaacta gtcagatgtg 3961 gtattctcat tatctttaaa aattgagtca tgtaaaataa gtattacgtc gaagttgcat 4021 aaaacacgaa aaagaaaagg actgcaagac gttagagcag aacagcttat ttcgtgcact 4081 cagttgtaat ttttccgaat cgacttgaca acaacaaaaa tacatacgac ttcaaaaaag 4141 ttaaaatacc gttttgttat gatataattt ctcaagaaaa cccgtttgtt tattttcgta 4201 ctagaacact tcagcttatc tcgtgcaacg acttgtagaa tagccgaaat tattttaatt 4261 gttttgtttt ttttactaag tttgtaactt tattattaac ttgtaaaacg ctaaaatgtt 4321 gacaaataaa ttttagaaat ttaatacatt tatgtaccaa aatgcaaaaa taaaatgttt 4381 taacaacaat gaatataaat taatttcact ttaatttctg aaatattatt ccttaaatac 4441 ctgtattggg taattcctta ttttccaaaa aataattatt ttatgaaaat ttgatctttg 4501 tttaatagta aatctaaaat tagtaatttc ttattattat tttcaaggcc tgataaatgt 4561 caatttttaa atgtctgtac gaaataagct ctggaaatgt aatatacctt acgggatacc 4621 aacttctgtt acaatattat aatgaacggg gctttttaca tgtgaaatta taagctaaga 4681 aaacattgct tgcgattttc aatatgtttt gtatttttga agttatgccg atatcaaaaa 4741 atgaaattat atattttttc ttttagtttt tttcgccgca tgctaaaaat aaattggcag 4801 agtatgagta ttcgtaaaag agaatacaca gcttgtgaga ttttctccat tacttgatta 4861 tataataata tataccattc taatatgacg atataattga cttaagtaat atttgcaaaa 4921 aataccgcat atgatggata aacaaaagtt gatcttatat aaaatactgt gatactaaat 4981 tttactagta cttccagcat agctgcattt tatccattct taaatattct atgataagca 5041 gcagcagata ataatcaatg actatatagg aaaacaaaaa atttttaaat gacatggctc 5101 aatgcttgtc tacattagat tttcaaataa gaaattttac aatatatata ttaatacgta 5161 tgaaaaggtg ggtataacat tgggattcct taaatatcat tttaaattgc aatgcaaaac 5221 aataggccct atgatgcaag cataaataga tgatctttag tcaactaact tttattgctg 5281 caacataaca aaagtacaga aaactggaga acaaaaatat actggaacat atattaaatt 5341 aaaatcaata atatgtaggt tagatgcgtc ggtttattca agacccagct aagaaaagtt 5401 taatatttat taaaacaatt atctaagaaa gctgataaaa ctatgagaca tttttttaat 5461 ttaaattagt ttggggaaaa gtaaatattt acaatagtat gctagtcatt aaacgagtat 5521 tctactcttg ttatggaatg gctttgattc ttcacatatt aagttgattt gcctaataat 5581 tcgtatacat attattttaa attataattg agaactgttt gcgaaaaaga aatagaaata 5641 ccacagtttt aaatggatat taattgtact tgcaagcttg acttacaata atatagataa 5701 gaagtataca aagcaaaagg ttgctcaaat tgcaaagctt ttggaaagta tttctctctc 5761 ttccggacaa aagtgtagtc ctgcaaacat acataagtag atgcttatag aacacatcgg 5821 gctatattgt aacccgttaa aacagtgata agaagatgcg ttgagacccg taccactatg 5881 atgtagacca aaacgaggca aagaaatgtt attaaaaccg tatagcagga agataaacta 5941 atcaaccagt actacataca tatgtacgtt gtcagcaatc caacaaagat gtttggatta 6001 gtcgcatagg acaattacat tatttgaaat tgtacgaata tttaagacaa ctaatgtcaa 6061 acttgggtta acttatattc tttagaatct aaacatgggc aacatcgaag gtgaacactt 6121 actattgatt tgtagtttta aaatgttgaa agactataac caaatgaatt atctaagaca 6181 caaccggcaa aacctagtgc cgttcagaga aagggatgca cataaaaata tgacaaatct 6241 gctttcattt atatttttaa acttcacggc atctttaaat atcatctctg agattacaga 6301 atatatactt actcattaac ttcttattct gactacaaat gatataaaag acaaaacact 6361 taatatctaa atatacagaa caaacttgaa tttaaaaact aggtttacac gttccaattc 6421 gaacacttga acttcactta tccacatttc atcaagttta ccaagacaat ttacatgacg 6481 attcattgaa gtaccaaagt atcaaacaat ataatcggaa aattaaaaat actgttaaat 6541 cgattatctg tttttcgaaa aagaatccac attttcattt aagcatccac acattttttt 6601 gattccaccg aaatttttta atttttaagg ataagtgggt ttataaaagt cttaagcaaa 6661 tgcagacatc caaaaatcga atcgcttctt tagttttgaa aacagtatat gcataacata 6721 atatataaaa atacacactt atacgtaaat ctttgttctt gatcaaaagt tagtgcaaat 6781 atccaaacga ataaagcaga ataataaaca cttaatatct aaataaacag aacaaacttt 6841 aattaaaaga aattaggttt acactacgta cactaaaact tcgcttatct aaatttcaat 6901 aagtacgttt agataaacaa aacattaaga taccaaagta gtaacaatct agtcggaaaa 6961 tgagaaatca tatttaaatg cagtttatgt tgcgacaaat taaatacttt tttaggcatt 7021 gattgctttc ttggttcttc aaaatgtgta attttggagg acaagtgggt tcaagaaggt 7081 cacaatcgaa tgcagacatc aaaaaatatg acattacttt aaacatttag ttttaaaaca 7141 aacccgaatg taccatgaaa tcagtatatg catagcttaa tatatacaaa atacacactt 7201 atacgtaaaa ttttgttctt catcaaaatt tagtgcaaat agccagacga ttaaaataga 7261 ataatagcaa gcaacaacaa cagtgttggc ggctacatta aaacaaatgt atcaatactt 7321 taaaaatttt aaaatagatc ttacgatggc ctttttattt tataatcgac tgtcagccaa 7381 taaaatgatc cccacgtcat taaagccgaa a