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LOCUS XM_017151073 7425 bp mRNA linear INV 09-DEC-2024 (Adar), transcript variant X2, mRNA. ACCESSION XM_017151073 VERSION XM_017151073.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151073.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7425 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7425 /gene="Adar" /note="Adenosine deaminase acting on RNA; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:108063839" CDS 472..2502 /gene="Adar" /codon_start=1 /product="double-stranded RNA-specific editase Adar isoform X1" /protein_id="XP_017006562.1" /db_xref="GeneID:108063839" /translation="MLNSANNNSPQHPVSAPSDINMNGYNRKSPQKRRYEMPKYAVSP KKKTCKERIPQPKNTVAMLNELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQGR SKKVARIEAAATALRSFIQFKDGAVLSPLKPSGNLDFTSDEHLENGIENLSNKQLVEI IEPLMLTEKKSNLTSLEQPTLRLQMFCMSQNVSKSAITVDGQKKVPDKGPVMLLYELF NDVNFECINIDGAQNNCRFKMTVTINEKKFDGTGPSKKLAKNAAAKAALASLCNISYS PMVVPQKNVPLPIDDKSSSMELPQIHADTIGRLVLEKFMEVIKGQEAYSRRKVLAGIV MTENMNFCEAKVISVSTGTKCVSGEHMSVNGAVLNDSHAEIVSRRCLLKFLYAQLDLQ CNQATAYQSIFVRNTDGQYPYKLKSGVHFHLYINTAPCGDARIFSPHENDTGVDKHPN RKARGQLRTKIESGEGTIPVKSSDGIQTWDGVLQGQRLLTMSCSDKIARWNIVGIQGS LLSSIIEPVYLHSIVLGSLLHPEHMYRAVCGRIEKSIQGLPPPYHLNKPRLALVTSAE PRNQAKAPNFGINWTIGDTELEVVNSLTGRTIGGQVSRITKQAFFVKYGFLMTNLPGI LVRKVTTDYGQTKANVKDYQIAKLELFSAFKREDLGSWLKKPIEQDEFGLAE" misc_feature 640..828 /gene="Adar" /note="first double-stranded RNA binding motif of STRBP, ILF3, RED1, RED2 and similar proteins; Region: DSRM_STRBP_RED-like_rpt1; cd19865" /db_xref="CDD:380694" misc_feature order(640..642,649..654,661..666,670..672,712..717, 721..723,727..729,778..786,793..795) /gene="Adar" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:380694" misc_feature 1093..>1233 /gene="Adar" /note="double-stranded RNA binding motif (DSRM) superfamily; Region: DSRM_SF; cl00054" /db_xref="CDD:444671" misc_feature 1372..2487 /gene="Adar" /note="tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase); Region: ADEAMc; smart00552" /db_xref="CDD:214718" polyA_site 7425 /gene="Adar" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcgcttccc cacctctaca gaactctaac cgacgaagtg tcattgtttt tttttctaat 61 gtaatggact taaatctttg cattcgaatc gagtgaatcc gggactgcag tctccccccc 121 gaacaccaaa cacccaatcg aattcgcggc cagaggagcg gatagagagc accgaggata 181 gaggaaacgc ttaaaattga tttgtttgtc cggccatgtc agtgtgtgtg tgacaagggc 241 tcgtccgtgt gcgtgcgcct gtcgctgtgt gtgtgtgctc tctttttttt cttcctatcg 301 agtgccgcta aattgaataa ttgcaagctt ccgcttcagt ttgatatcgg tttggtgtta 361 cttttctgaa tatattggta ttatcatcat catactccta caaatcacca tataaattag 421 cacaacagat ttcaccaaga tataaagtgc gtgaaattcg attccagagt catgttaaac 481 agcgcaaata acaattctcc ccagcacccg gtgagtgcac catctgatat caacatgaac 541 ggatataacc ggaagtcgcc tcaaaaacgg cgctatgaga tgccaaaata tgctgtatca 601 ccaaaaaaga aaacctgcaa ggagcgcatt ccgcagccaa agaatacggt ggcaatgctg 661 aatgagttaa gacatggact gatttacaaa ttggagtcac agactggtcc ggtgcacgca 721 cctttattta cgatatccgt tgaggtcgat ggacagaaat acttgggcca gggtcgcagt 781 aaaaaagttg cacgcatcga ggcagctgcc acagcactgc gaagctttat acaattcaag 841 gacggagccg tcttgtcgcc attgaagcca tcgggcaact tggactttac cagcgatgaa 901 catctagaaa atggtattga aaatttgtcc aacaaacaat tggtcgagat cattgagccg 961 ttgatgttga ctgaaaagaa atccaacctt acctcgcttg aacaacccac gttgcgtctt 1021 caaatgtttt gcatgagtca gaatgtcagc aagagtgcca tcactgttga cggtcaaaag 1081 aaggttccgg acaagggtcc cgtaatgctg ctctacgaat tgttcaacga tgttaatttt 1141 gaatgcatta atattgacgg agctcaaaac aattgtcgct tcaagatgac cgtcacgatt 1201 aacgaaaaga agttcgatgg aacaggtcct tccaaaaagc tggcgaaaaa tgctgcggcc 1261 aaagcggcac ttgcctcgtt gtgcaacatt tcctacagtc caatggtggt gccacaaaag 1321 aacgtacccc ttccaatcga cgacaagtcg tcatccatgg agttgccgca gatacatgcc 1381 gatacgattg gacgcctggt tttggagaag ttcatggaag taatcaaggg ccaggaggcc 1441 tactcgcgtc gaaaggtatt ggcgggcatt gttatgactg aaaacatgaa tttttgtgaa 1501 gccaaagtta tttcagtctc gacgggcacc aagtgtgtca gcggcgagca tatgagtgtg 1561 aacggagctg tcctgaacga ttcccatgcc gaaatagtgt ctaggcgttg tctcctcaag 1621 ttcttgtatg cacagctgga tcttcagtgc aatcaggcca cagcatatca gtcgattttc 1681 gtgaggaata ctgatgggca atacccttat aaactaaaat ccggggtaca tttccatttg 1741 tatataaata cagcaccttg tggggatgca cggatattta gtcctcacga aaacgacact 1801 ggtgttgata aacatccaaa tagaaaagct cgcggccagt tgcgtacaaa aatcgagtcc 1861 ggtgagggga cgattccagt caaaagcagt gatggaatac agacgtggga tggcgtgctg 1921 cagggccaac gcttgctgac aatgtcgtgc tcggacaaaa ttgcacgatg gaacatcgtg 1981 ggtatacaag gctccttgtt gtcttccata attgaaccag tgtacctgca ttcgattgtg 2041 ctgggcagtt tgctgcaccc agagcacatg taccgtgcag tgtgcggccg gatcgaaaag 2101 tccattcaag gtctgccgcc gccgtatcat ttgaataagc cccggctcgc attggtcact 2161 tcggccgagc cgcggaatca ggccaaggct ccaaactttg gtatcaattg gaccattgga 2221 gataccgagt tggaagtggt gaactcgctt actggtcgaa caatcggcgg tcaagtgtct 2281 cgcatcacga aacaggcgtt ttttgttaaa tatggatttt taatgacaaa cttaccaggt 2341 attttagtcc gcaaagtaac cacagactac gggcaaacca aagctaacgt aaaggactat 2401 cagatcgcaa agctagaatt gttttcggca ttcaaacgtg aagaccttgg cagctggctg 2461 aagaaaccca ttgaacaaga cgagttcggt cttgccgaat gactgcactc agcactatta 2521 tataatttaa aaaaagacaa cagtaacggc aagcaattaa tagaattaga tgacatagat 2581 tttatgacaa actcttatgt agaatgcaaa ttaagttggg tgcaaagaca tcgatatgaa 2641 attcatacga ttgagaacct gccaacattg cgtacccatt gcaacagcaa gcacaaagat 2701 gcttatgctc gaaatatgaa aaaaggctct agaatattta tagaatagaa tgtagttttt 2761 atgctggaac tgagtaaagg agtattatgg cgtttttttt tgaatcaatt cattttcaaa 2821 ttggttaagg caatctcttt cgcatctaag tttgccacac gtttcatttt ttaaatcgaa 2881 ataaaacgat ttcgccccaa ccacactgtt ataattttca agtgagttgg gttgtttaag 2941 tgcccatatt ttacaaaaat gtggtaataa ataatgttgc aagacaggta aaacaagaag 3001 ggaagccctt gcagatcgtt cctatggcag ctgtatgaaa tagcactcca gagtttctgt 3061 attatattgt ttttccttta ttttccgatc gttcatataa tagtcatcca ttttttcttt 3121 taatttaact cgttattcta aaatattttt aatattccct aaaaagaaga aataatgttt 3181 aaaaacaacg aatttataat ttttctctat taattttccg ttttgatgtc cctctgcaag 3241 ggtaaaaaac tataaaacca acaagtaaaa tctataaata acaataacca aaacagaaat 3301 ctctagactt tgttctgtta tcgattaagc aatgtatttt gttaagtaat gttatttgca 3361 acgacataat aattataata aagtcacgct tactataagc ataacgtaaa ctttaggtga 3421 atctacatta tttccacata tttttcttca gatcatatat acacctaagc tttcatcgat 3481 tttcaataaa taaaactgtg ttctcggttg aaaaacttta aatataaaaa cattttatca 3541 atttaattat gtagattttt ttaaaaatta gttgaaatca catgcaaatg aaaaggatat 3601 aaatagatta gttaaaaatt ttatagcatg ataaagacat tttaaatacc taagtctaat 3661 aatgaagctt gtaacgccat tttgtataat gtagacgaca tattgtatta gttgtacact 3721 tgtacatcat aatattttct attaaaaact tacttcttcc tgatttcttc caattggctt 3781 atttctggtt gttcgatcaa ttaaaaatgg caattgtaaa tggtcaagaa tcatgctgaa 3841 atacaaaagt atttactttt taatgattgc tcttccaacg tgacctgaag tattcgtatt 3901 caatataagg cgatttggcc ctttcttttc aattgtacat ggaaatggta cgattaataa 3961 actagtcaga tgtggtattc tcattatctt taaaaattga gtcatgtaaa ataagtatta 4021 cgtcgaagtt gcataaaaca cgaaaaagaa aaggactgca agacgttaga gcagaacagc 4081 ttatttcgtg cactcagttg taatttttcc gaatcgactt gacaacaaca aaaatacata 4141 cgacttcaaa aaagttaaaa taccgttttg ttatgatata atttctcaag aaaacccgtt 4201 tgtttatttt cgtactagaa cacttcagct tatctcgtgc aacgacttgt agaatagccg 4261 aaattatttt aattgttttg ttttttttac taagtttgta actttattat taacttgtaa 4321 aacgctaaaa tgttgacaaa taaattttag aaatttaata catttatgta ccaaaatgca 4381 aaaataaaat gttttaacaa caatgaatat aaattaattt cactttaatt tctgaaatat 4441 tattccttaa atacctgtat tgggtaattc cttattttcc aaaaaataat tattttatga 4501 aaatttgatc tttgtttaat agtaaatcta aaattagtaa tttcttatta ttattttcaa 4561 ggcctgataa atgtcaattt ttaaatgtct gtacgaaata agctctggaa atgtaatata 4621 ccttacggga taccaacttc tgttacaata ttataatgaa cggggctttt tacatgtgaa 4681 attataagct aagaaaacat tgcttgcgat tttcaatatg ttttgtattt ttgaagttat 4741 gccgatatca aaaaatgaaa ttatatattt tttcttttag tttttttcgc cgcatgctaa 4801 aaataaattg gcagagtatg agtattcgta aaagagaata cacagcttgt gagattttct 4861 ccattacttg attatataat aatatatacc attctaatat gacgatataa ttgacttaag 4921 taatatttgc aaaaaatacc gcatatgatg gataaacaaa agttgatctt atataaaata 4981 ctgtgatact aaattttact agtacttcca gcatagctgc attttatcca ttcttaaata 5041 ttctatgata agcagcagca gataataatc aatgactata taggaaaaca aaaaattttt 5101 aaatgacatg gctcaatgct tgtctacatt agattttcaa ataagaaatt ttacaatata 5161 tatattaata cgtatgaaaa ggtgggtata acattgggat tccttaaata tcattttaaa 5221 ttgcaatgca aaacaatagg ccctatgatg caagcataaa tagatgatct ttagtcaact 5281 aacttttatt gctgcaacat aacaaaagta cagaaaactg gagaacaaaa atatactgga 5341 acatatatta aattaaaatc aataatatgt aggttagatg cgtcggttta ttcaagaccc 5401 agctaagaaa agtttaatat ttattaaaac aattatctaa gaaagctgat aaaactatga 5461 gacatttttt taatttaaat tagtttgggg aaaagtaaat atttacaata gtatgctagt 5521 cattaaacga gtattctact cttgttatgg aatggctttg attcttcaca tattaagttg 5581 atttgcctaa taattcgtat acatattatt ttaaattata attgagaact gtttgcgaaa 5641 aagaaataga aataccacag ttttaaatgg atattaattg tacttgcaag cttgacttac 5701 aataatatag ataagaagta tacaaagcaa aaggttgctc aaattgcaaa gcttttggaa 5761 agtatttctc tctcttccgg acaaaagtgt agtcctgcaa acatacataa gtagatgctt 5821 atagaacaca tcgggctata ttgtaacccg ttaaaacagt gataagaaga tgcgttgaga 5881 cccgtaccac tatgatgtag accaaaacga ggcaaagaaa tgttattaaa accgtatagc 5941 aggaagataa actaatcaac cagtactaca tacatatgta cgttgtcagc aatccaacaa 6001 agatgtttgg attagtcgca taggacaatt acattatttg aaattgtacg aatatttaag 6061 acaactaatg tcaaacttgg gttaacttat attctttaga atctaaacat gggcaacatc 6121 gaaggtgaac acttactatt gatttgtagt tttaaaatgt tgaaagacta taaccaaatg 6181 aattatctaa gacacaaccg gcaaaaccta gtgccgttca gagaaaggga tgcacataaa 6241 aatatgacaa atctgctttc atttatattt ttaaacttca cggcatcttt aaatatcatc 6301 tctgagatta cagaatatat acttactcat taacttctta ttctgactac aaatgatata 6361 aaagacaaaa cacttaatat ctaaatatac agaacaaact tgaatttaaa aactaggttt 6421 acacgttcca attcgaacac ttgaacttca cttatccaca tttcatcaag tttaccaaga 6481 caatttacat gacgattcat tgaagtacca aagtatcaaa caatataatc ggaaaattaa 6541 aaatactgtt aaatcgatta tctgtttttc gaaaaagaat ccacattttc atttaagcat 6601 ccacacattt ttttgattcc accgaaattt tttaattttt aaggataagt gggtttataa 6661 aagtcttaag caaatgcaga catccaaaaa tcgaatcgct tctttagttt tgaaaacagt 6721 atatgcataa cataatatat aaaaatacac acttatacgt aaatctttgt tcttgatcaa 6781 aagttagtgc aaatatccaa acgaataaag cagaataata aacacttaat atctaaataa 6841 acagaacaaa ctttaattaa aagaaattag gtttacacta cgtacactaa aacttcgctt 6901 atctaaattt caataagtac gtttagataa acaaaacatt aagataccaa agtagtaaca 6961 atctagtcgg aaaatgagaa atcatattta aatgcagttt atgttgcgac aaattaaata 7021 cttttttagg cattgattgc tttcttggtt cttcaaaatg tgtaattttg gaggacaagt 7081 gggttcaaga aggtcacaat cgaatgcaga catcaaaaaa tatgacatta ctttaaacat 7141 ttagttttaa aacaaacccg aatgtaccat gaaatcagta tatgcatagc ttaatatata 7201 caaaatacac acttatacgt aaaattttgt tcttcatcaa aatttagtgc aaatagccag 7261 acgattaaaa tagaataata gcaagcaaca acaacagtgt tggcggctac attaaaacaa 7321 atgtatcaat actttaaaaa ttttaaaata gatcttacga tggccttttt attttataat 7381 cgactgtcag ccaataaaat gatccccacg tcattaaagc cgaaa