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LOCUS XM_017151069 8052 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017151069 VERSION XM_017151069.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151069.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8052 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8052 /gene="br" /note="broad-complex core protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:108063837" CDS 499..3234 /gene="br" /codon_start=1 /product="broad-complex core protein isoform X1" /protein_id="XP_017006558.2" /db_xref="GeneID:108063837" /translation="MDDTQHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIK AHRVVLSACSPYFRELLKSTPCKHPVILLQDVNFMDLHSLVEFIYHGEVNVHQKSLQS FLKTAEVLRVSGLTQQQAEDTHSHLAQIQNLANSGGRTPINSHSHPHPHHGSLHDDGG SASTLFSRQGAGSPPPPQSVVPSVLPPHINNQLLKRMAMMHRSSAAAVAEETSHALKR LRGSDNNGGLPLSGAVGSGGSNNNSPDLPPLHARSTSPQQTPADFSTIKHHNNNNTPP LKEEKRNGPTGNGNSGNGNGNGASNGNGISISDKLGSLTPSPLARAGADDVKSEPMEL VCSNNNANANDEHSNDSTGEHDANRSSSGDGGKGSLSSGNDEEIGDGLASHHAAPQFI MSPAENKMFHAAAFNFPMSNLDHSALLGLNTQLQQSGDLAVSPQGGSTGSLIGGVIVP GGGSGGGGTPSNSSSNNNNNNSQQQQKVEQQQSSPHQQLLQQQQQHHSTPHTNNSPQQ QQLKQEQQLKSGGSSKSSDLHIAAGSERSLSRSSQGLAEAGGHSATPSPSPIAYHKRE RERERERERERERERERERSLDRERDLERSNVGAGGGSPPPPLPSHHSHFGQHPLSLL PSHHQLHATHHELAAHHAHAAHAHAAHHAAHALARAGSPLEHHHLLHHRRASLSPSTG GGGGAGGGGGGGGGGGGGRGGGGGGGGPGSSLLSSVRAQDVAQANRLLLPLPLNACHR CDVCGKLLSTKLTLKRHKEQQHLQPLNNAVCNLCHKVFRTLNSLNNHKSIYHRRQKNH HSYFHHGAGVGQAGSPGSRLHQSLSSLSAAAAAANNSVNVGVGGAGGAGGNAVAAAAA AAAAAAELLLSPIVGAAAVAGGTASSTLQLAAAHQAQQQQQQNSPGIVKPCMDFL" misc_feature 589..840 /gene="br" /note="BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins; Region: BTB_POZ_BAB-like; cd18315" /db_xref="CDD:349624" misc_feature 2719..2772 /gene="br" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2809..2874 /gene="br" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN 1 aggtctagtt gaagccggat cgccggaaac ggaaccggaa ccggaggcga tgcacctgaa 61 acagccggag gatccctcgc aaacagacat ttaaataatc attagtgaat caagtcttca 121 gctacctaag gaatcggcaa ataatcaaga aaagtaaccg aagaagagag tcaagtaagg 181 aataccatcc ttccttccaa aaccggtggg ccaggccgcc aaaaagccgt caaaatacgc 241 aagaaggtga cctcgaagaa ggccagcgtt gtgtcggttg acgacgatca caacaacaac 301 aacaccagcc acaacaacga ccacaacgct cggcagccca caagcacaat tacaccaata 361 tcaacaactc caacacccat accaacgccc ataccaacac caacgcccac gcctggtgac 421 cccgaacaac aggatagcgt agagtaccag taccagtacc agtacccccc cactaccaat 481 cagaaacagc ccatcgaaat ggacgacaca cagcacttct gcctacgctg gaacaactac 541 cagagcagca taacctcggc cttcgagaat ctgcgggacg acgaggcctt cgtggacgta 601 accctcgcct gcgaggggcg cagcatcaag gcccaccgcg tcgtcctctc cgcctgcagt 661 ccctacttcc gcgagctgct caagagcaca ccctgcaaac acccggtcat actgctgcag 721 gatgtcaact tcatggacct gcactcgctg gtggagttca tctaccacgg cgaggtcaac 781 gtgcaccaaa agtccctgca gtccttcctc aagaccgccg aggtgctgcg cgtctcggga 841 ttaacgcaac agcaggcgga ggacacacat agccacctgg ctcagataca gaacttggcc 901 aactccggtg gccgcacgcc catcaactcg cactcccatc cacatccgca tcatggctcg 961 ctgcacgacg acggcggctc cgcctcgacc ttgttcagcc gccagggagc cggctcgccg 1021 ccgccgccgc aatcggtggt gccgtcggtc ctcccgccgc acatcaacaa ccagctgctc 1081 aagcgcatgg ccatgatgca tcgcagcagt gccgccgccg tcgccgagga gacctcgcac 1141 gccctgaagc gcctgcgcgg atcggacaac aacggaggac tgccgctctc cggcgccgtc 1201 ggcagtggcg gtagcaacaa caacagcccc gacttgccgc cgctccatgc gcgcagcact 1261 tcgccccagc agactccggc cgactttagt acgatcaagc accacaacaa caacaacacg 1321 ccgccgctca aggaggagaa gcgtaatgga cccactggca acggaaactc tggcaatggc 1381 aatggcaacg gagcgagcaa cggcaacgga atctccatca gcgacaagct gggcagcctc 1441 acaccatcgc cactcgcacg ggcgggcgcc gatgacgtca agtcggagcc catggagctc 1501 gtgtgctcca acaacaatgc gaatgccaat gacgagcaca gcaacgactc caccggcgag 1561 cacgatgcca atcgttccag tagtggcgac ggcggcaagg gttctttgag ctctggcaac 1621 gacgaggaga tcggtgacgg actcgcctct catcacgccg ccccgcagtt catcatgtcg 1681 ccggcggaga acaagatgtt tcatgccgcc gccttcaact tccccatgag caatctcgat 1741 cactcagcgt tgcttggtct caacacacaa ttgcagcagt ccggtgacct cgccgtttcc 1801 cctcaaggtg gcagcaccgg cagcctaatt ggtggcgtca ttgtgcccgg cggtggtagt 1861 ggtggtggtg gcacccctag taatagtagt agcaacaaca acaacaacaa cagccaacaa 1921 caacaaaaag tagagcaaca acagtcatca ccacaccaac aactcctcca acaacaacaa 1981 caacatcatt ccacaccaca taccaacaac agtccacaac aacagcaact gaagcaggaa 2041 caacagctga aatccggagg aagcagcaag tccagcgatc tgcacattgc agcagggagc 2101 gaaaggagcc tatcgcgatc ctcccaagga ctggcggagg cgggcggtca cagtgccacg 2161 ccctcgccct cgcccatcgc ctaccacaag cgggaaaggg agcgggagag ggaaagggag 2221 cgagagcgcg agagagaacg tgagagggag cgatcgctgg atcgcgagcg ggatctcgaa 2281 cgctccaacg taggcgcagg cggcggatca ccaccgccac cactgccctc gcaccactcg 2341 cacttcggcc agcatccgct gtcgctgcta ccgagccacc accagctgca cgccacccac 2401 cacgagctgg ccgcccacca tgcccacgcc gcccacgccc atgccgccca ccatgccgcc 2461 catgccctgg cccgtgcggg atcgcccctg gagcaccacc atctgctgca ccaccgacgt 2521 gcctccctgt cgccctcgac tggcggcgga ggcggagcag gaggaggcgg cggcggtgga 2581 ggaggtggcg gcggcggacg aggcggcggc ggaggaggcg gcggtccggg tagcagcctc 2641 ctctcctcgg tgcgcgccca ggatgtggcc caggccaacc ggctgctcct gcccctgccc 2701 ctgaacgcct gccatcggtg cgacgtctgc ggcaagctgc tgagcaccaa gctcacgctg 2761 aagcgccaca aggagcagca gcacctgcag ccgctgaaca atgccgtctg caacctgtgc 2821 cacaaggtct tccgcacgct gaactcgctg aacaaccaca agagcatcta ccatcggcgg 2881 cagaagaacc atcactcgta cttccatcac ggcgccggtg tgggtcaggc gggcagtccg 2941 ggcagccggc tccaccagtc gctgagttcg ctgagcgccg cggccgctgc ggccaacaac 3001 agcgtgaatg tgggcgtggg cggagcgggc ggggccggtg gcaatgccgt ggctgccgca 3061 gcggcggcgg cagctgcagc cgccgagctc ctgctctcgc ccatcgtggg ggcagccgcc 3121 gtggccggcg gaacggccag ctcgacgctc cagctggcgg cggcccacca ggcgcagcag 3181 cagcagcaac agaactcgcc gggcatcgtg aagccgtgca tggacttctt ataagatcag 3241 cagcaactct tgcagcagct gttccacgtg gcgctcaaca actccgcggc ggcagcggcg 3301 gctgcagcgg cagcagctgc ggcgggtggt ggtggcggag gatcgggtgg atcaggagct 3361 ggacaggagg gattgaatgg aggaggagca gcacaggatt atggactggg agccggagtg 3421 cctggagggc caagtggcac gcccaccgtc gatctcaccc agctggagca ctcggccggg 3481 gggggtggac ccttccagca ccacctgccg ccacaccacc tggcccacca gcatccgatg 3541 gcccaccaca atccccacca gctggcccat ccgcatgccc atccgcacca gcatccctac 3601 gaacgcatga atttactaga ccaataagag gggcgcagga aagtatgcta cgaaagatga 3661 tgatcggacc cacacacaaa gcactagaaa aagcaggaca acggaaggag gatctagcga 3721 aggatccagc gaaggatcca gcgaaggagg aggagcagaa gaacgaaccg aacgaccgaa 3781 aggaggagaa ggactactac tactactata taccacataa acatttaaat ttcggatctc 3841 acagaacgga aaattcaaag actttttcgg ccagaacaaa aaagaaaaca aaaaaaaaaa 3901 acgaatggca aacatcgaga ataaagaata aagaaagcga taaggagagg aaaggaagac 3961 aaacaaaaaa acatttttag gcaaatggaa aaactgtgat tatttacgac ttgattataa 4021 agcaagcaaa aacaaaggtc ttttacgata aagctatata gcgatataca tacatacaag 4081 cccacatacg cacacacact cagactctca atcagatcgc gctggaaacg aaagtggaaa 4141 tgaatatgga gcatacatat aagcattttt tttgcccatc ccaaattggg atgcgaatag 4201 ggtttgtcac gtttaaaact agaataggag aaagattgga gcccaggata gaagactgtt 4261 agccatgcca catacaaaaa ccacagcacc cacaacccca ccacataccc cattgaacac 4321 gtacccctga gtattaccca gatgccatcg ccatgcccat cagaactgaa tctgattccc 4381 agccgatata gatgtggatg tggatgcagc cggggatcac aatggatctg aatcgaacac 4441 ttcccgtcat ctgtacagca tccaagacta ttcttacccc cctcacatat ataaataaca 4501 ctcccacgaa ccgaaaaaca tacagctaat gcattttttt ttgtttttta atatcattgt 4561 aagatatcag agatatatat atatataaca tatgtgtaca tttagcagcc actaaatatt 4621 catcaaatga gtagcaaggt caatgtaaaa accacaagaa tgtaaaccta tccctaagtg 4681 aatgtgtgtg taatacgatt ttttttactt atctacaatt aaaagcgttg ctcttaggaa 4741 aaaccacaca cgcgagcata catttgtaca tgtatttgca taactatgaa tacgaatatg 4801 aatatatgaa tacgaatata actaagacta tgactcagca taacgcatac acagcaaaag 4861 cataaatcca ttttgagatg ggagcagaag aagggagatc taagattgta tataggtgga 4921 aatagcactg acgggggatt tatgattatg ataatgagaa tgaacagagt tcttgcgcgt 4981 ttcgaagctt ggggaaaaaa agaaaaagaa aacggggacc aggactgact agttttaaac 5041 tcaaccgaat gaacagaaga acgatgagcg atcatcgata aaagttagcc gatagctgaa 5101 aaaattcgac actgaacaat gaaattgttg gtccccagtt gatatgatat gatatgttgc 5161 cacttattat tatagaacta tgctttccaa ttggcaaact aacgcgacac taaacgtata 5221 atcaaaatta gcgaccagat tattgatggt atagatttac tttgcttcca gcaccaacct 5281 taccttaatt tgaagactga tcattcgaag tagaactttg gaaggggcga ggactaggac 5341 tcttagttct agacctggga cgacccgtgg aaggattagt caggcagagg aaccgcagaa 5401 ccgcagaacc gaacagagaa cgacattatt tttaggcgtg tgcaatttca tctttggttt 5461 tgggttgggg tccccaaagt tggggatagc gataggaagg atggatggcc ttagttaaaa 5521 gtcacaccta taggacctat acaacatagg atatatgtag aacagagaga gagaaagaga 5581 gggaggagga ggaaaagaga gcgaagagag tggaaacgtt gtgtgcgagt atagtcgaat 5641 tttatttttt atacaaccta ttataattaa ctcttagtgt aaactcaccc acgcataacc 5701 tacgagtatg tatttttttt cttgcttctt ttggcaaacg aaaagtctga aaagttgatt 5761 aagttgaatc accacccacg ttttgatacc aaaattcgat ttacatagct tatgcacata 5821 cgactataat aagttaaccg tacgtgtctg tatctgtatc gatatctata aggagaaccc 5881 tccgtttgtt acgctggaac acacaaaccc aagcgatccc aaatcgccag ctgcaatgcc 5941 atatatgtag agcatccgag tgctgtcccc agctctccga tctccgacct cacccccaaa 6001 tgtcacctcg tttttattat gattatgatt atattcaata aatgtggaaa tgtaaatcca 6061 gacttatgta tgagtactga atgacagtca catagcagtt cgcagttcga ataatgtcga 6121 atgtcgcagc ttcgcacttt aaatgtcgat tacttaaaac atgtacttct tgctaacaaa 6181 caaactaaca aaaataacaa agtaacaaac taacagacat cgcagataac agataacagt 6241 tcacaagccc cagagtgttt gagaaggtgc atcatgtgag tacagagccc aggtacagat 6301 aaactcaact aactaaactg aggacctaac caactaacta actaaatagc atattgatac 6361 tcgaaatagc agcagtaaga cctcgataag cgaggtatcc taacagaaaa ccaaaaaccc 6421 aaaaccgaga actcagaact cagaataccg attaaatacc gaataatcaa tagtaggttc 6481 gcctgtttaa acgtgtgtac gtactatgac tacttttttt tcctattcgt atagatgttc 6541 ccccctagat cctaaccact aacccctccc cttaagccct taatccatta attcctatac 6601 ctttgccagt taagtgaatg tatgcatact gaaccgtatt atccaatgaa ccattagctc 6661 caagccacat aaagcttaca attacaatta cattaacaac tacaattaca attacaatta 6721 caactacaat acgcgatatt taaaataaac taaactacag taacagtaac agtgcagtaa 6781 ctacatggct atacgtacat aagtaaaata gcaaaaatcc gaggaggcaa gaaatacgca 6841 tagaaataga acccagactt ggtgttgaga ggaggaagga tctcgatggt ctatatacca 6901 ttccattcag ctcctttcta cgctcagaat cagaatcaga atcagagaga caacaagcca 6961 atacaataaa caaaatatct catatagttg caaacactcg tacacaaacg cttgcatact 7021 tataacggta gaaatatagc cccataccaa tatccgtaac acccaaagcc acgcccccaa 7081 aaccgatcga agatcaagcc aatccaatca aaagagaaaa tataagaaaa tcatgattag 7141 tatgaaaaga aaagcaacag acagaagttt cctttggctt tcgaattgtt tgtttctccc 7201 cactacccac ccctcaaaga aagctcgaac tcgaactaaa actacaataa aagaaactat 7261 taagttttcc actctagcct agtaagaaat gtacattttt gtctcctgta cgttcacttg 7321 tatataagca aggtgccagc actagaacta accaaccacc aaccacacac acatagcata 7381 tataataata atacgaagca aaactttgga taattaataa ttttatgtat ttgtgtaagt 7441 gtgtcgagca gacaaactca aactctaaga aaagctatag ctaaagcaaa accaataccg 7501 aaatccgaac cgaacatgaa gaaaacccgt taatttcgtt atacgtaaag atcggaaaag 7561 caagttcatt gaaatcacac acacgcagac acgcattcac acacgcaaac acgcacacac 7621 acacactcag acagacagaa ggaaaaacga agtattttca taattaaaaa aacaaaatga 7681 tatcgtgtta ttatttaaat aaatagaatg tatataagtg aaccatttgt atgtgccgag 7741 gaattctttt ttaaaacccc ccatcccctg gttgtcctgt tgtgctgtct tggaatgggg 7801 aacttggaaa cttggaaact tggctatacg ttccactttg accccgaccc tttggacctg 7861 aaccctgtga accccatgaa cccaacttcc atctgtgcga gtgtctggtg ctgggaccac 7921 tcattcagtt cactccactt cagttcatcc gcgtagaatg tcgtctaacc tcagtcatgg 7981 tcgctctcag tgtgcccaga tcgctatatt aatccagctc ccacccacaa tccactaccc 8041 accacccact ac