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LOCUS XM_017151048 7689 bp mRNA linear INV 09-DEC-2024 (LOC108063827), transcript variant X5, mRNA. ACCESSION XM_017151048 VERSION XM_017151048.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151048.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7689 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7689 /gene="LOC108063827" /note="uncharacterized protein CG43867; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108063827" CDS 539..6079 /gene="LOC108063827" /codon_start=1 /product="uncharacterized protein CG43867 isoform X4" /protein_id="XP_017006537.2" /db_xref="GeneID:108063827" /translation="MSDEVPLGRLSQIFDTLTNLQQQQQQHLRSQEQLHPPHPHSHPH THPQSPADQRRRSASSSPSPSASVSASTSGRATPSLGVASPLNTLQYYSHNAHNNYLL RPQDVATSGYLHTFPSHLYHHQQHHHQVHHLQQHSQPPSLPTQLGGGVTQRGCLSGSQ SLQGSPLLAKRATSFSGQIPMAQGRFGATGGGTGVTASTPNSPRLLPRRVPRPPPIPA KPNQVKTAAAASDQQQPRDSSSTAPTIVQSHVNPVLAALDAPDAPWPHFSTLTEHLDV HQVNNYGQALPEINWQERCLELQLELHRSKNQAGRIRDMLREKLTELEQRVIEAEERA EEAEDKVRAMEQRLSEWPKPPPQHPHPHQPVPASHPQEQQQQQQARSNCSPSHQVGGG ATAAGSTVSGAPPPTQEAEKTITSLEIQVEEQRQLRLHDARQIEAKAAKIKEWVNNKL RDLEEQNQLLREQNVKCNQQLELLKNHIANQSQRHSIVGPVRNSLSLDVQDFAGSGSN PEHRRRSESLDPQDPIIGRPLTSSYPHHQHRRNLSMEPQELERNLVAAVDGLTLAPLS SISSKAPGSAARPDSSDTDTAHDYAEIYTPSCEKLPAWMKNNPALMASGGNSSTTTTT TSELGVPRPPTPPLHRFPSWEAKIYQVANDGLAGAGGGTAESAAIQEPDIQEGTGTGT NLSNGRRHGHSHGSGTGTVTAGTGDGHGTLGSTPGTPLPPSRQQQTASGGFCDISVPV YATVKGRASQIRSMPFTGDSSDDSSDGEDHAVMLTHHSHNSSSTENTETSTSGSASSP SKSLKTSSSLSPAKRSGSESPKNAKARVHLQPRTTSTSHTNQQHLQPQSFHTHTHHQH HTLPHQYQVQNHNHQLGAYTLAPSSGQITLPRPHGHALQTPTASKAPSPLQQHMRGTV ISDLSFESGLSDDYALPPDAVSESTCMDASMPSLLMRQSYVDSPSKKIESLEKMGHLA KLGGKLKTWRKRWFVLKNGSLNYWKSQHDVQRKPQGQIQLDEACRINRAEGASTFEID TGKKVYYLTADSHATMDDWIRVLQNVQRRNATKLLLSRDDQKPTVQGWVTKVKNGHPK KCWCVLLGKMFLYFKAPVETNPLGQINMRDARVEEVEHVSDSDSEEREDAAQDQARLT VAIYPAHQGPTYLILSGKPERDNWLYHLTVVSGGGPSAGTQYEQLVQKLMETDGDPNC VLWRHPILLHTKDTITAPLSSMHTETMQPEAIKLFKSIQLFMSVAVNQPGIDYHVVLA QNALQHALDMPELQTEMICILIKQTSRHMGQKLSVGVQAPAATPIIDCKSNPPAYSFV QGWQLLALAVSLFVPRSSRLLWYLKLHLSRNADTKTETGKYAAYCERALERTLKNGGR ETKPSRMEVLSILLKNPYHHSLPHAIPVHMMNTTYQVVSFDGSTTIEEFQATLAHELG TRDASNGFCLFSDDPIEKDLEHYLEPLAKLCDVISKWETALREKGSGKFENSRVIQLS YKNRLYWKHTIKCETDKERLLLCYQTNSQIVQGRFPLSRELALELASLMSQIDMGDYS LEKSRDVGVGLKGLDKFYPYRYRDALGAEQLKDVQELLVSKWMLLKGRSTLDCVRIYL TCCRKWPYFGACLFQAKPRQSPESSMGTTGAATPVAWLAVAEDALNVLELSTMAPVAR YPYSSVMTFGGCQDDFMLVVSHDDGSGEQKLLFAMSKPKILEITLLIADYMNALGHTV PGTPQMNSLTRNGSHRSLRASQRPTLGAGGSAVATTTGFSTNATTTAHNTLNSHATHT LNSNHSHTLSSSHHAGGGGGGSQPGTLSSGHHHPQHHHHHQQQQQHHQPDILKSTPDH QRIK" misc_feature <1763..>1990 /gene="LOC108063827" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 3437..3724 /gene="LOC108063827" /note="Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1; Region: PH1_PLEKHH1_PLEKHH2; cd13282" /db_xref="CDD:241436" misc_feature 3755..4060 /gene="LOC108063827" /note="Pleckstrin homology domain; Region: PH; smart00233" /db_xref="CDD:214574" misc_feature 4178..4711 /gene="LOC108063827" /note="Domain in Myosin and Kinesin Tails; Region: MyTH4; smart00139" /db_xref="CDD:214535" misc_feature 4739..5041 /gene="LOC108063827" /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in Caenorhabditis elegans max-1 and its homologs PLEKHH1 and PLEKHH2; Region: FERM_F1_Max1_like; cd17094" /db_xref="CDD:340614" misc_feature 4748..5410 /gene="LOC108063827" /note="Band 4.1 homologues; Region: B41; smart00295" /db_xref="CDD:214604" misc_feature 5396..5707 /gene="LOC108063827" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:473070" polyA_site 7689 /gene="LOC108063827" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgtgtgtctg cggcagtgcg tgtgtttgcc aggccaaaac gaaaagcgag gaaccaaagc 61 caaagaaagc taagcctatc ccaacaacaa caagtgcgcg aaagcagcca gaaggcaaaa 121 caacaataaa gcagcgtgga aacagctgtt cgtttccttt tttctcggcc cgaaaatgca 181 aaattaatac aattacaatg cggcggcgat aaaacaaaaa taaaaacaag cagagagcgg 241 agagaaaaaa acaaaaagta aaaagcattt accgtttaaa cagcaagaac aacaacaacg 301 acaacaaagc caagaaggag aggcacaaag aggaagaaga agagtttgcg cagtcacgtg 361 tgcagtcgac gtcgacggcg gccgcggcag aggaaaattc ccatgcggaa aattcacatt 421 cgcgatgatg atggaaagcg agacgatgat gatgaagctg ttgaaggagg gaaaaccagc 481 agcagcggca gcaacaacaa caactagcag ctgttagagc gagacagcta ccgcgtcaat 541 gtccgacgaa gtgcctttgg gtcgcctatc gcagatcttc gatacgctaa ccaatcttca 601 gcagcaacag cagcagcacc tgcgttccca ggagcaactg catcctccac atccgcattc 661 acatccgcat acacatccgc agtcgcctgc ggatcagcgt aggagatccg cctcctcatc 721 gccatcgcca tcggccagtg tctctgcctc gacttctggg cgggccacgc cttctttggg 781 cgtggccagc ccactgaata cactgcaata ctacagtcat aacgcccata ataactattt 841 gctgcggccg caagatgtcg ccaccagtgg ctacctgcac acctttcctt cgcatttgta 901 tcatcatcag cagcatcatc accaagtgca ccacctgcag cagcacagcc aaccgccctc 961 actgcccacc caattgggag gcggggtaac ccaacgtggc tgtctatcgg gctcacaatc 1021 gctgcaggga tcaccacttt tggccaagag ggcaacctcc tttagtgggc aaataccaat 1081 ggctcagggt cgattcggag ccaccggagg aggaactgga gtcactgcat ccacaccgaa 1141 tagcccgagg cttctgcctc gacgtgtgcc acgcccaccg cccattccgg ccaagccgaa 1201 tcaggtgaag acggcggcgg cagcgtcgga tcaacaacag cccagggatt cttcttcgac 1261 tgccccgacg attgttcagt cgcatgtgaa tcccgtgctg gctgctctcg atgcaccaga 1321 tgctccatgg ccacactttt cgacgctcac cgagcacttg gacgtccacc aggtgaacaa 1381 ctacggacag gctctgccgg agattaactg gcaggaacga tgtttggagc tgcaactgga 1441 gctgcatcgg tcgaagaatc aggcgggtcg tatacgcgat atgctgcgtg aaaagctaac 1501 ggagctggaa caacgcgtca ttgaagcgga agaacgcgcc gaggaagccg aagataaggt 1561 gcgtgccatg gagcagcggc tgagtgagtg gcccaagcca ccgccccagc atccgcatcc 1621 gcaccagcca gtgccagcca gtcatccgca ggagcagcag cagcagcagc aggccagaag 1681 caattgttcg ccgagccatc aggtcggagg aggagccacg gcagcaggat caacagtatc 1741 aggtgcacca ccgcccaccc aggaggcgga gaagaccatc acttcgctgg agatccaggt 1801 ggaggaacag agacagctgc gactccacga cgcacgacaa atcgaggcca aggcggccaa 1861 gatcaaggag tgggtgaaca acaagctacg cgatctcgag gagcagaacc agttgctgcg 1921 cgaacagaac gtcaagtgca accagcagtt ggagctgctc aagaatcaca tagccaatca 1981 atcgcagcgc cacagtatcg tgggtccggt gcgcaatagc ctcagcctag acgttcagga 2041 ctttgccggt tcggggtcca atcccgagca tcgcaggcga agcgagagtc tcgatccgca 2101 ggatcccatt attggccgac cgctgaccag ctcgtatccg catcaccagc acaggcgaaa 2161 cctctcgatg gagccgcagg aattggaacg aaatctggtg gccgctgtcg atggcctaac 2221 ccttgccccg ctgtccagca tctccagcaa agctcccgga tcagctgcca ggccagatag 2281 ctccgatacg gatacggccc atgattatgc ggagatttac acgccatcct gcgaaaagct 2341 acccgcctgg atgaagaaca atccggcatt gatggccagt ggcgggaatt ccagcaccac 2401 caccacaacc accagtgaac tgggcgtgcc acggcctccg acgccgccgc tgcatcgctt 2461 tcccagctgg gaggccaaga tctaccaggt ggccaacgat ggactggcgg gagctggcgg 2521 agggacggcg gagagtgcgg ccattcagga gccagatatt caagagggaa cgggcacggg 2581 aacgaatctc tccaatggcc gacgacatgg tcacagtcat ggatctggaa cgggaacggt 2641 aacggcggga actggggatg ggcacggtac cctgggcagt acaccgggaa cgccgctgcc 2701 accgtcgagg caacaacaaa ccgccagcgg cggcttctgt gatatatccg tgcccgtcta 2761 cgcaacggtc aagggtcgag cctcgcagat ccgctcgatg ccatttacgg gcgattcgag 2821 cgatgactcc agtgatggcg aggaccatgc ggtgatgctc acccatcatt cacacaactc 2881 gtcgagcacc gagaacacgg agacctcgac atcgggcagc gcttcgagtc cctcgaagag 2941 cctgaagacc tcctctagcc taagtccggc caagcgaagt ggttcggaga gtcccaagaa 3001 cgcgaaggcg cgtgtccacc tccaaccacg caccacatcc accagccaca ccaaccaaca 3061 gcatctccaa ccgcaatcgt tccatacgca tacgcaccac caacaccaca cactgcccca 3121 ccaataccaa gtccagaatc ataaccacca gttgggggcc tacacgctgg cgccttcgag 3181 tgggcagata acgctgccgc gtccccatgg ccacgccctc caaactccaa ccgcctccaa 3241 agccccctca cccctccagc agcacatgcg tggcacagta atttcagatc tctcctttga 3301 atcaggcctc tcggacgact acgccctgcc ccccgacgcc gtgtcggagt ccacgtgcat 3361 ggacgcctcg atgccgtcgc tgttgatgcg acagtcctac gtggattcgc ccagcaaaaa 3421 gattgagtcg ctggagaaga tgggtcacct ggccaagctg ggtggcaagc tgaagacttg 3481 gcgcaagcgt tggttcgttc taaagaacgg atccctcaac tactggaaga gccagcacga 3541 tgtgcagcgg aagccccagg ggcagatcca actggacgag gcctgtcgca tcaatcgggc 3601 ggagggagcc tccaccttcg agatagacac gggcaagaag gtctactacc tcacggcgga 3661 ctcgcatgcc accatggacg attggatccg ggtgctgcag aatgtgcagc gaaggaatgc 3721 caccaagctg ctgctgagtc gcgatgacca gaagccgacg gtgcagggtt gggtgaccaa 3781 ggtgaagaac ggccatccca agaagtgctg gtgtgtgctg ttgggcaaga tgttcctcta 3841 cttcaaggct cctgttgaga cgaatcccct gggccagatt aatatgcgcg atgcccgagt 3901 cgaggaggtg gaacacgttt ctgactcgga ctccgaggag cgagaggatg ccgcccagga 3961 tcaggcccga ctcacggtgg ccatctatcc ggcgcaccag ggaccaacct acctgatcct 4021 gtccgggaag ccagagcggg ataattggct ctatcaccta actgtcgttt cgggcggcgg 4081 cccaagtgct ggcacccagt atgaacagct cgtacagaag ctcatggaaa cggatggcga 4141 tcctaactgc gtcctgtggc gccatcccat tctgctgcac accaaagaca ccatcaccgc 4201 gccgctctca tcaatgcaca cggaaaccat gcagccggag gccattaagc tcttcaagag 4261 cattcagctg ttcatgtcgg tggcggtcaa ccagccgggc atcgattacc acgtggtgct 4321 cgcccagaac gccctgcaac atgctctgga tatgcccgag ctgcagacgg agatgatctg 4381 catactgatc aagcagacct cccgccacat gggccagaag ctcagtgtcg gcgtccaggc 4441 tcctgctgcc acgcccataa tcgactgcaa aagcaacccg cccgcctaca gcttcgtcca 4501 gggctggcag ctcctggccc tggccgtatc cctctttgtt ccgcgctcga gtcgcctgct 4561 gtggtacctc aagctccact tgtcccggaa tgcggataca aagacagaga cgggcaagta 4621 cgccgcctac tgtgagcgcg cgctggagag gacgcttaag aacgggggcc gcgagacgaa 4681 accgtcgcgg atggaggttc tatcgattct cctgaagaat ccctaccacc actctctgcc 4741 gcatgcgatt cccgtgcaca tgatgaacac cacctaccag gtggtttcct ttgatggctc 4801 caccaccatc gaggagttcc aggccacttt ggcccacgaa ctgggcacgc gggatgccag 4861 caatgggttc tgcctattca gcgacgatcc aattgagaag gatctggagc actacctgga 4921 gccgctggcc aagctgtgcg acgtgatcag caaatgggag acggctttaa gggagaaggg 4981 atcggggaag tttgagaatt cgcgggtgat ccagctgagc tacaagaacc gtctctactg 5041 gaagcacacc attaagtgcg agacggacaa ggagcgcctg ctgctgtgct accagaccaa 5101 ctcgcagatt gtccagggcc gattcccgct atcccgggag ttggctttgg agctggcctc 5161 gctgatgtcc cagatcgaca tgggcgacta ctcgctggag aagtcccgcg acgtgggcgt 5221 gggcctgaag ggtctggaca agttctaccc gtatcgctat agggacgctt tgggcgccga 5281 gcagctgaag gatgtgcagg agctgctggt ctccaagtgg atgctgctca agggtcgctc 5341 cacgctggac tgtgtgcgca tttacctcac ctgctgccgc aagtggccgt atttcggagc 5401 ctgcctgttc caggcgaagc ccagacagag cccagaatca tccatgggca ccacgggagc 5461 agccactccg gttgcctggc tggcggtggc cgaggatgcc ctcaacgtac tcgagctgtc 5521 caccatggcg ccggtggcca ggtatccata cagttcggtg atgacctttg gcggctgcca 5581 ggacgacttt atgctggtgg tttcccacga cgacggcagc ggtgagcaaa agctcctgtt 5641 tgccatgagc aagcccaaga ttctggagat cacgctgctc atagcggact acatgaatgc 5701 actgggccac acggtgccag gaacgccgca gatgaactcg ctgacccgca acggatcgca 5761 tcgctcgctg cgagcctccc agcgtccgac tttgggggcc ggcggctcgg cggtggccac 5821 caccaccggg ttctccacga acgccaccac cacggcccac aacacgctca attcgcatgc 5881 gacgcacacg ctcaactcga accactcgca cacgctgagc agctcccatc acgccggcgg 5941 cggcggagga ggaagtcagc cgggcacact gagctcgggt catcatcatc ctcagcacca 6001 ccaccatcac cagcagcagc agcagcacca ccagcctgat atactaaaga gcacgccgga 6061 tcatcagagg atcaagtaga ttggaactaa gattcctaat agatcgagaa gatagtagag 6121 aagatgggag gatcattgta catagacgga ggatcggatc acagcttaac agacatatac 6181 gactaaacag atacatatgc accagcctag tggcaacaaa tatacaccta aagatagaaa 6241 gatagaaaga tataaagata gatggataga tggatagcgg tagagagacg acgtagcgta 6301 atcggcctgg gttggacctt cttctccttg cgcaccactc actaaagttc tctttcctaa 6361 gctaacaacg gtactcgtac tctaaatcta aattgtaaac aaaaacagca gcagcagcaa 6421 gcatattata tatatattat aaatttaatt tttttgaata gtcctaagtc cacgtacccc 6481 aaaaaatgca agaggtatgt gaagaagaag aaacttaaac gtaaacagaa catgaatctc 6541 aatgtttaga ttgttcttgt tcttgtctta ttattaccta ttattaatat tatttttttg 6601 tatttttttt aaccaacaaa caagcagcca caatgcaaaa caacctataa acacctatag 6661 aaacgatata tttgagtgtt ctcgctcttc gatgctttgt aatgaatctc aatttgtaat 6721 tgtccctcca tgcgcgaaac tgccttttga atttgtagat gtcggagcca agaacgagta 6781 aaagcgaaaa acaaaaaaga aatcaagcca aaaacaagca aactagcatt agcagaaacc 6841 aattgagaaa acaagcaaat attttgtaaa ggatttttca agcccagtgc aggacgacca 6901 tcaaccaagc atccccatct acatctagat atttacagtg aagccccgat tcgtacggtt 6961 aactgagggt cgatttctca atgtcatgtt atggttccgg ttagttaact gtcagagaaa 7021 actaatttga ggttaaatgg ttcggaagaa ctaaatcgtt ttctcaatgt gatgttaatt 7081 taacctgaaa ttaacctgaa cttaacctga cattgagaaa acggcccaaa tacgataacg 7141 cgttcttagc ccgttcagtg tctagatgta caacacaaaa actcactcac cagagcttca 7201 gcagaaacct taaacacaca aatgaaggta gtcaacaaaa ttcggtagat aaacacgccc 7261 caattaatta ttgcccactt ttttacaccc gcgcccacag aagcatatat gcattcatat 7321 atatacatat agaatatata gaaggcagac ggcagaaggt atacatgtat tcggattcga 7381 tatttaacaa aattatacac accaaattaa cgatataaca aacagtttat acggtaacag 7441 cgcatttttt tcctaattgt aaagatttga tattacaaat ttatatgcgc cgagacgcaa 7501 cgaaaacgaa aatggaaatt aaacgagaaa acgagagatc gaacagagca tctcattggg 7561 aagaatcgaa gaaaatcgaa ggcttgcaag tggatataaa ctatataggc gaatgtatca 7621 cacatcacac tccagtgaaa cgaaatatat ataaagggaa attaacgatt aaaactaaac 7681 caaaaatga