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LOCUS XM_017151046 7785 bp mRNA linear INV 09-DEC-2024 (LOC108063827), transcript variant X3, mRNA. ACCESSION XM_017151046 VERSION XM_017151046.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151046.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7785 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7785 /gene="LOC108063827" /note="uncharacterized protein CG43867; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108063827" CDS 539..6175 /gene="LOC108063827" /codon_start=1 /product="uncharacterized protein CG43867 isoform X2" /protein_id="XP_017006535.2" /db_xref="GeneID:108063827" /translation="MSDEVPLGRLSQIFDTLTNLQQQQQQHLRSQEQLHPPHPHSHPH THPQSPADQRRRSASSSPSPSASVSASTSGRATPSLGVASPLNTLQYYSHNAHNNYLL RPQDVATSGYLHTFPSHLYHHQQHHHQVHHLQQHSQPPSLPTQLGGGVTQRGCLSGSQ SLQGSPLLAKRATSFSGQIPMAQGRFGATGGGTGVTASTPNSPRLLPRRVPRPPPIPA KPNQVKTAAAASDQQQPRDSSSTAPTIVQSHVNPVLAALDAPDAPWPHFSTLTEHLDV HQVNNYGQALPEINWQERCLELQLELHRSKNQAGRIRDMLREKLTELEQRVIEAEERA EEAEDKVRAMEQRLSEWPKPPPQHPHPHQPVPASHPQEQQQQQQARSNCSPSHQVGGG ATAAGSTVSGAPPPTQEAEKTITSLEIQVEEQRQLRLHDARQIEAKAAKIKEWVNNKL RDLEEQNQLLREQNVKCNQQLELLKNHIANQSQRHSIVGPVRNSLSLDVQDFAGSGSN PEHRRRSESLDPQDPIIGRPLTSSYPHHQHRRNLSMEPQELERNLVAAVDGLTLAPLS SISSKAPGSAARPDSSDTDTAHDYAEIYTPSCEKLPAWMKNNPALMASGGNSSTTTTT TSELGVPRPPTPPLHRFPSWEAKIYQVANDGLAGAGGGTAESAAIQEPDIQEGTGTGT NLSNGRRHGHSHGSGTGTVTAGTGDGHGTLGSTPGTPLPPSRQQQTASGGFCDISVPV YATVKGRASQIRSMPFTGDSSDDSSDGEDHAVMLTHHSHNSSSTENTETSTSGSASSP SKSLKTSSSLSPAKRSGSESPKNAKARVHLQPRTTSTSHTNQQHLQPQSFHTHTHHQH HTLPHQYQVQNHNHQLGAYTLAPSSGQITLPRPHGHALQTPTASKAPSPLQQHMRGTV ISDLSFESGLSDDYALPPDAVSESTCMDASMPSLLMRQSYVDSPSKKIESLEKMGHLA KLGGKLKTWRKRWFVLKNGSLNYWKSQHDVQRKPQGQIQLDEACRINRAEGASTFEID TGKKVYYLTADSHATMDDWIRVLQNVQRRNATKLLLSRDDQKPTVQGWVTKVKNGHPK KCWCVLLGKMFLYFKAPVETNPLGQINMRDARVEEVEHVSDSDSEEREDAAQDQARLT VAIYPAHQGPTYLILSGKPERDNWLYHLTVVSGGGPSAGTQYEQLVQKLMETDGDPNC VLWRHPILLHTKDTITAPLSSMHTETMQPEAIKLFKSIQLFMSVAVNQPGIDYHVVLA QNALQHALDMPELQTEMICILIKQTSRHMGQKLSVGVQQLLLCATQSLFTCDTQQAGH AQANGSSPTSIQAPAATPIIDCKSNPPAYSFVQGWQLLALAVSLFVPRSSRLLWYLKL HLSRNADTKTETGKYAAYCERALERTLKNGGRETKPSRMEVLSILLKNPYHHSLPHAI PVHMMNTTYQVVSFDGSTTIEEFQATLAHELGTRDASNGFCLFSDDPIEKDLEHYLEP LAKLCDVISKWETALREKGSGKFENSRVIQLSYKNRLYWKHTIKCETDKERLLLCYQT NSQIVQGRFPLSRELALELASLMSQIDMGDYSLEKSRDVGVGLKGLDKFYPYRYRDAL GAEQLKDVQELLVSKWMLLKGRSTLDCVRIYLTCCRKWPYFGACLFQAKPRQSPESSM GTTGAATPVAWLAVAEDALNVLELSTMAPVARYPYSSVMTFGGCQDDFMLVVSHDDGS GEQKLLFAMSKPKILEITLLIADYMNALGHTVPGTPQMNSLTRNGSHRSLRASQRPTL GAGGSAVATTTGFSTNATTTAHNTLNSHATHTLNSNHSHTLSSSHHAGGGGGGSQPGT LSSGHHHPQHHHHHQQQQQHHQPDILKSTPDHQRIK" misc_feature <1763..>1990 /gene="LOC108063827" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 3437..3724 /gene="LOC108063827" /note="Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1; Region: PH1_PLEKHH1_PLEKHH2; cd13282" /db_xref="CDD:241436" misc_feature 3755..4060 /gene="LOC108063827" /note="Pleckstrin homology domain; Region: PH; smart00233" /db_xref="CDD:214574" misc_feature 4178..4807 /gene="LOC108063827" /note="Domain in Myosin and Kinesin Tails; Region: MyTH4; smart00139" /db_xref="CDD:214535" misc_feature 4835..5137 /gene="LOC108063827" /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in Caenorhabditis elegans max-1 and its homologs PLEKHH1 and PLEKHH2; Region: FERM_F1_Max1_like; cd17094" /db_xref="CDD:340614" misc_feature 4844..5506 /gene="LOC108063827" /note="Band 4.1 homologues; Region: B41; smart00295" /db_xref="CDD:214604" misc_feature 5492..5803 /gene="LOC108063827" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:473070" polyA_site 7785 /gene="LOC108063827" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgtgtgtctg cggcagtgcg tgtgtttgcc aggccaaaac gaaaagcgag gaaccaaagc 61 caaagaaagc taagcctatc ccaacaacaa caagtgcgcg aaagcagcca gaaggcaaaa 121 caacaataaa gcagcgtgga aacagctgtt cgtttccttt tttctcggcc cgaaaatgca 181 aaattaatac aattacaatg cggcggcgat aaaacaaaaa taaaaacaag cagagagcgg 241 agagaaaaaa acaaaaagta aaaagcattt accgtttaaa cagcaagaac aacaacaacg 301 acaacaaagc caagaaggag aggcacaaag aggaagaaga agagtttgcg cagtcacgtg 361 tgcagtcgac gtcgacggcg gccgcggcag aggaaaattc ccatgcggaa aattcacatt 421 cgcgatgatg atggaaagcg agacgatgat gatgaagctg ttgaaggagg gaaaaccagc 481 agcagcggca gcaacaacaa caactagcag ctgttagagc gagacagcta ccgcgtcaat 541 gtccgacgaa gtgcctttgg gtcgcctatc gcagatcttc gatacgctaa ccaatcttca 601 gcagcaacag cagcagcacc tgcgttccca ggagcaactg catcctccac atccgcattc 661 acatccgcat acacatccgc agtcgcctgc ggatcagcgt aggagatccg cctcctcatc 721 gccatcgcca tcggccagtg tctctgcctc gacttctggg cgggccacgc cttctttggg 781 cgtggccagc ccactgaata cactgcaata ctacagtcat aacgcccata ataactattt 841 gctgcggccg caagatgtcg ccaccagtgg ctacctgcac acctttcctt cgcatttgta 901 tcatcatcag cagcatcatc accaagtgca ccacctgcag cagcacagcc aaccgccctc 961 actgcccacc caattgggag gcggggtaac ccaacgtggc tgtctatcgg gctcacaatc 1021 gctgcaggga tcaccacttt tggccaagag ggcaacctcc tttagtgggc aaataccaat 1081 ggctcagggt cgattcggag ccaccggagg aggaactgga gtcactgcat ccacaccgaa 1141 tagcccgagg cttctgcctc gacgtgtgcc acgcccaccg cccattccgg ccaagccgaa 1201 tcaggtgaag acggcggcgg cagcgtcgga tcaacaacag cccagggatt cttcttcgac 1261 tgccccgacg attgttcagt cgcatgtgaa tcccgtgctg gctgctctcg atgcaccaga 1321 tgctccatgg ccacactttt cgacgctcac cgagcacttg gacgtccacc aggtgaacaa 1381 ctacggacag gctctgccgg agattaactg gcaggaacga tgtttggagc tgcaactgga 1441 gctgcatcgg tcgaagaatc aggcgggtcg tatacgcgat atgctgcgtg aaaagctaac 1501 ggagctggaa caacgcgtca ttgaagcgga agaacgcgcc gaggaagccg aagataaggt 1561 gcgtgccatg gagcagcggc tgagtgagtg gcccaagcca ccgccccagc atccgcatcc 1621 gcaccagcca gtgccagcca gtcatccgca ggagcagcag cagcagcagc aggccagaag 1681 caattgttcg ccgagccatc aggtcggagg aggagccacg gcagcaggat caacagtatc 1741 aggtgcacca ccgcccaccc aggaggcgga gaagaccatc acttcgctgg agatccaggt 1801 ggaggaacag agacagctgc gactccacga cgcacgacaa atcgaggcca aggcggccaa 1861 gatcaaggag tgggtgaaca acaagctacg cgatctcgag gagcagaacc agttgctgcg 1921 cgaacagaac gtcaagtgca accagcagtt ggagctgctc aagaatcaca tagccaatca 1981 atcgcagcgc cacagtatcg tgggtccggt gcgcaatagc ctcagcctag acgttcagga 2041 ctttgccggt tcggggtcca atcccgagca tcgcaggcga agcgagagtc tcgatccgca 2101 ggatcccatt attggccgac cgctgaccag ctcgtatccg catcaccagc acaggcgaaa 2161 cctctcgatg gagccgcagg aattggaacg aaatctggtg gccgctgtcg atggcctaac 2221 ccttgccccg ctgtccagca tctccagcaa agctcccgga tcagctgcca ggccagatag 2281 ctccgatacg gatacggccc atgattatgc ggagatttac acgccatcct gcgaaaagct 2341 acccgcctgg atgaagaaca atccggcatt gatggccagt ggcgggaatt ccagcaccac 2401 caccacaacc accagtgaac tgggcgtgcc acggcctccg acgccgccgc tgcatcgctt 2461 tcccagctgg gaggccaaga tctaccaggt ggccaacgat ggactggcgg gagctggcgg 2521 agggacggcg gagagtgcgg ccattcagga gccagatatt caagagggaa cgggcacggg 2581 aacgaatctc tccaatggcc gacgacatgg tcacagtcat ggatctggaa cgggaacggt 2641 aacggcggga actggggatg ggcacggtac cctgggcagt acaccgggaa cgccgctgcc 2701 accgtcgagg caacaacaaa ccgccagcgg cggcttctgt gatatatccg tgcccgtcta 2761 cgcaacggtc aagggtcgag cctcgcagat ccgctcgatg ccatttacgg gcgattcgag 2821 cgatgactcc agtgatggcg aggaccatgc ggtgatgctc acccatcatt cacacaactc 2881 gtcgagcacc gagaacacgg agacctcgac atcgggcagc gcttcgagtc cctcgaagag 2941 cctgaagacc tcctctagcc taagtccggc caagcgaagt ggttcggaga gtcccaagaa 3001 cgcgaaggcg cgtgtccacc tccaaccacg caccacatcc accagccaca ccaaccaaca 3061 gcatctccaa ccgcaatcgt tccatacgca tacgcaccac caacaccaca cactgcccca 3121 ccaataccaa gtccagaatc ataaccacca gttgggggcc tacacgctgg cgccttcgag 3181 tgggcagata acgctgccgc gtccccatgg ccacgccctc caaactccaa ccgcctccaa 3241 agccccctca cccctccagc agcacatgcg tggcacagta atttcagatc tctcctttga 3301 atcaggcctc tcggacgact acgccctgcc ccccgacgcc gtgtcggagt ccacgtgcat 3361 ggacgcctcg atgccgtcgc tgttgatgcg acagtcctac gtggattcgc ccagcaaaaa 3421 gattgagtcg ctggagaaga tgggtcacct ggccaagctg ggtggcaagc tgaagacttg 3481 gcgcaagcgt tggttcgttc taaagaacgg atccctcaac tactggaaga gccagcacga 3541 tgtgcagcgg aagccccagg ggcagatcca actggacgag gcctgtcgca tcaatcgggc 3601 ggagggagcc tccaccttcg agatagacac gggcaagaag gtctactacc tcacggcgga 3661 ctcgcatgcc accatggacg attggatccg ggtgctgcag aatgtgcagc gaaggaatgc 3721 caccaagctg ctgctgagtc gcgatgacca gaagccgacg gtgcagggtt gggtgaccaa 3781 ggtgaagaac ggccatccca agaagtgctg gtgtgtgctg ttgggcaaga tgttcctcta 3841 cttcaaggct cctgttgaga cgaatcccct gggccagatt aatatgcgcg atgcccgagt 3901 cgaggaggtg gaacacgttt ctgactcgga ctccgaggag cgagaggatg ccgcccagga 3961 tcaggcccga ctcacggtgg ccatctatcc ggcgcaccag ggaccaacct acctgatcct 4021 gtccgggaag ccagagcggg ataattggct ctatcaccta actgtcgttt cgggcggcgg 4081 cccaagtgct ggcacccagt atgaacagct cgtacagaag ctcatggaaa cggatggcga 4141 tcctaactgc gtcctgtggc gccatcccat tctgctgcac accaaagaca ccatcaccgc 4201 gccgctctca tcaatgcaca cggaaaccat gcagccggag gccattaagc tcttcaagag 4261 cattcagctg ttcatgtcgg tggcggtcaa ccagccgggc atcgattacc acgtggtgct 4321 cgcccagaac gccctgcaac atgctctgga tatgcccgag ctgcagacgg agatgatctg 4381 catactgatc aagcagacct cccgccacat gggccagaag ctcagtgtcg gcgtccagca 4441 actactgttg tgcgccaccc aaagcctatt cacctgtgat acccaacagg cgggccacgc 4501 ccaagccaac ggcagttcgc ccacctccat acaggctcct gctgccacgc ccataatcga 4561 ctgcaaaagc aacccgcccg cctacagctt cgtccagggc tggcagctcc tggccctggc 4621 cgtatccctc tttgttccgc gctcgagtcg cctgctgtgg tacctcaagc tccacttgtc 4681 ccggaatgcg gatacaaaga cagagacggg caagtacgcc gcctactgtg agcgcgcgct 4741 ggagaggacg cttaagaacg ggggccgcga gacgaaaccg tcgcggatgg aggttctatc 4801 gattctcctg aagaatccct accaccactc tctgccgcat gcgattcccg tgcacatgat 4861 gaacaccacc taccaggtgg tttcctttga tggctccacc accatcgagg agttccaggc 4921 cactttggcc cacgaactgg gcacgcggga tgccagcaat gggttctgcc tattcagcga 4981 cgatccaatt gagaaggatc tggagcacta cctggagccg ctggccaagc tgtgcgacgt 5041 gatcagcaaa tgggagacgg ctttaaggga gaagggatcg gggaagtttg agaattcgcg 5101 ggtgatccag ctgagctaca agaaccgtct ctactggaag cacaccatta agtgcgagac 5161 ggacaaggag cgcctgctgc tgtgctacca gaccaactcg cagattgtcc agggccgatt 5221 cccgctatcc cgggagttgg ctttggagct ggcctcgctg atgtcccaga tcgacatggg 5281 cgactactcg ctggagaagt cccgcgacgt gggcgtgggc ctgaagggtc tggacaagtt 5341 ctacccgtat cgctataggg acgctttggg cgccgagcag ctgaaggatg tgcaggagct 5401 gctggtctcc aagtggatgc tgctcaaggg tcgctccacg ctggactgtg tgcgcattta 5461 cctcacctgc tgccgcaagt ggccgtattt cggagcctgc ctgttccagg cgaagcccag 5521 acagagccca gaatcatcca tgggcaccac gggagcagcc actccggttg cctggctggc 5581 ggtggccgag gatgccctca acgtactcga gctgtccacc atggcgccgg tggccaggta 5641 tccatacagt tcggtgatga cctttggcgg ctgccaggac gactttatgc tggtggtttc 5701 ccacgacgac ggcagcggtg agcaaaagct cctgtttgcc atgagcaagc ccaagattct 5761 ggagatcacg ctgctcatag cggactacat gaatgcactg ggccacacgg tgccaggaac 5821 gccgcagatg aactcgctga cccgcaacgg atcgcatcgc tcgctgcgag cctcccagcg 5881 tccgactttg ggggccggcg gctcggcggt ggccaccacc accgggttct ccacgaacgc 5941 caccaccacg gcccacaaca cgctcaattc gcatgcgacg cacacgctca actcgaacca 6001 ctcgcacacg ctgagcagct cccatcacgc cggcggcggc ggaggaggaa gtcagccggg 6061 cacactgagc tcgggtcatc atcatcctca gcaccaccac catcaccagc agcagcagca 6121 gcaccaccag cctgatatac taaagagcac gccggatcat cagaggatca agtagattgg 6181 aactaagatt cctaatagat cgagaagata gtagagaaga tgggaggatc attgtacata 6241 gacggaggat cggatcacag cttaacagac atatacgact aaacagatac atatgcacca 6301 gcctagtggc aacaaatata cacctaaaga tagaaagata gaaagatata aagatagatg 6361 gatagatgga tagcggtaga gagacgacgt agcgtaatcg gcctgggttg gaccttcttc 6421 tccttgcgca ccactcacta aagttctctt tcctaagcta acaacggtac tcgtactcta 6481 aatctaaatt gtaaacaaaa acagcagcag cagcaagcat attatatata tattataaat 6541 ttaatttttt tgaatagtcc taagtccacg taccccaaaa aatgcaagag gtatgtgaag 6601 aagaagaaac ttaaacgtaa acagaacatg aatctcaatg tttagattgt tcttgttctt 6661 gtcttattat tacctattat taatattatt tttttgtatt ttttttaacc aacaaacaag 6721 cagccacaat gcaaaacaac ctataaacac ctatagaaac gatatatttg agtgttctcg 6781 ctcttcgatg ctttgtaatg aatctcaatt tgtaattgtc cctccatgcg cgaaactgcc 6841 ttttgaattt gtagatgtcg gagccaagaa cgagtaaaag cgaaaaacaa aaaagaaatc 6901 aagccaaaaa caagcaaact agcattagca gaaaccaatt gagaaaacaa gcaaatattt 6961 tgtaaaggat ttttcaagcc cagtgcagga cgaccatcaa ccaagcatcc ccatctacat 7021 ctagatattt acagtgaagc cccgattcgt acggttaact gagggtcgat ttctcaatgt 7081 catgttatgg ttccggttag ttaactgtca gagaaaacta atttgaggtt aaatggttcg 7141 gaagaactaa atcgttttct caatgtgatg ttaatttaac ctgaaattaa cctgaactta 7201 acctgacatt gagaaaacgg cccaaatacg ataacgcgtt cttagcccgt tcagtgtcta 7261 gatgtacaac acaaaaactc actcaccaga gcttcagcag aaaccttaaa cacacaaatg 7321 aaggtagtca acaaaattcg gtagataaac acgccccaat taattattgc ccactttttt 7381 acacccgcgc ccacagaagc atatatgcat tcatatatat acatatagaa tatatagaag 7441 gcagacggca gaaggtatac atgtattcgg attcgatatt taacaaaatt atacacacca 7501 aattaacgat ataacaaaca gtttatacgg taacagcgca tttttttcct aattgtaaag 7561 atttgatatt acaaatttat atgcgccgag acgcaacgaa aacgaaaatg gaaattaaac 7621 gagaaaacga gagatcgaac agagcatctc attgggaaga atcgaagaaa atcgaaggct 7681 tgcaagtgga tataaactat ataggcgaat gtatcacaca tcacactcca gtgaaacgaa 7741 atatatataa agggaaatta acgattaaaa ctaaaccaaa aatga