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LOCUS XM_017151043 4386 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017151043 VERSION XM_017151043.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017151043.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4386 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4386 /gene="per" /note="period circadian regulator; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 110 Proteins" /db_xref="GeneID:108063824" CDS 314..4021 /gene="per" /codon_start=1 /product="period circadian protein isoform X1" /protein_id="XP_017006532.2" /db_xref="GeneID:108063824" /translation="MENLNNMEGGESTESTHNTKVSDSAYSNSCSNSQSQRSGSSKSR LSGSHSSGSSGYGGKPSTQASSSDMIIKRNKDKSRKKKKNKGTGQTQVQSLISAAASL EGGIGGAEEKPPRPSGSGCGDQQTLQDHQQHGEDRGEATEPAEQLRQQQEEEDDQSGS ESESADRGDLGAAKSEAEQSFPIPSPLSVTIVPPSMGGGVGGCGGVGHASGLDSGLGK FDKAWGESTPGKLESMAGVSAAGASGGIPGRVKEDSFCCVISMHDGIVLYTTPSITDV LGFPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSMPKDAKSTFCVMLRRYR GLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSY KVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSV MKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHH RVFQGPKQCNVFEAAPTCKLKISEEAQNRNTRIKEDIVKRLAETVSRPSDTVKQEVSR RCQALASFMETLMDEVSRADLKLELPHENELTVSERDSVMLGEISPHHDYYDSKSSTE TPPSYNQLNYNENLLRFFNSKPVTAPAELDPPKTEPPPEPRSTCVSGGASGPMSPVHE GSGGSGSSGNFTTASNIHMSSVTNTSIAGTGGTGTGTGTGTGTGTGTGTGTGTGTKTG TGTGNGTNSGTTVTTTGTTSSSRGGGAASPPITLTESLLNKHNDEMEKFMLKKHRESR GRTGEKSKKSANDTLKMLEYSGPGHGIKRGGSHSWEGEANKPKQQLTLGTGDAGSKGA GAGGGGGGGAAAGSGGVGSGGAGVAGGGGGGSVPPEGRTTTTTSGAGTPGGGGGGGAG GAAGATSSSVGSSTPGPSSYPSCTQNINLWPPFSVGITPPVHSTHTAMAQSSFSSAGL FPTFYYIPAASLTPTSPTRSPRIHKHPHKSGVELPTTSQQAAAAAAAAQAMPLQYMAG VMYPHPSLFYTHPAAAAATAMMYQPMPFPGMANALQIPERPLGSQSAYNKTVYTATPV SMTKKVPGAFHSVTTPAQVQRPSSQTTSVKAEGAGSNAAGADPCKKEVVAPDSSPIAS VMGDYNSDPPCSSNPTNNKKYTDSNGNSDDMDGSSFSSFYSSFIKTTDGSESPPDTEK DPKHRKIKSLSTSENKIMEHPEEDQTQHGDG" misc_feature 1070..1357 /gene="per" /note="PAS fold; Region: PAS; pfam00989" /db_xref="CDD:395786" misc_feature 1520..1843 /gene="per" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:238075" misc_feature order(1568..1570,1580..1582,1598..1600,1637..1648, 1739..1741,1754..1756) /gene="per" /note="putative active site [active]" /db_xref="CDD:238075" misc_feature order(1628..1630,1640..1642,1664..1666,1673..1678, 1775..1777,1781..1783) /gene="per" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:238075" polyA_site 4386 /gene="per" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 attcgtgggg atttaaagct ggaaggtcga acaacgcgct cgccgagcaa ccgaactatt 61 tgaaagaatc gaaacaacga cctctagaaa cacgcaagat accttttttt tgccagcaga 121 aatacctttt atttattcgg atttggtgac agtgagagtg tcgaagctga gtgcgaattg 181 aaccagccgc aaagtgaggg ataaagccca caacttgatc tatagccatc tcatcctccc 241 gcgagtgcaa cagggagagc gagcgagagt aaatctcgca aagtaaatac tatatatcac 301 acaaattggc aatatggaga acctaaacaa catggagggc ggcgagtcca cggagtccac 361 acacaacacc aaggtgtccg attcggcgta ttcaaacagc tgcagcaaca gtcagtcgca 421 gcgcagtggc agttccaagt cccggctgag cggcagccac tcgtccggca gcagcggcta 481 tgggggcaag ccctcgacgc aggccagcag cagcgacatg atcatcaagc ggaacaagga 541 caagtcgcgc aagaagaaga agaacaaggg gacggggcag acgcaggtgc aatccctgat 601 ctcggcggcc gcctccctgg aggggggcat aggtggggcg gaggagaagc cgccgcggcc 661 cagcggcagt ggatgcgggg accagcagac gctgcaggac caccagcagc acggcgagga 721 tcgcggcgag gccacggagc cggcggagca gctgcgccag cagcaggagg aggaggacga 781 ccagtcggga tccgagtccg agtcggcgga tcgtggcgat ctgggcgcgg ccaagtcgga 841 ggcggagcag agcttcccca tcccctcgcc gctgtccgtg accatagtgc cgccctcgat 901 gggcggcgga gtgggcggct gcgggggcgt gggccacgcc tccggcctgg acagcggcct 961 ggggaagttc gacaaagcgt ggggcgagtc gacgccgggc aagctggagt ccatggcggg 1021 cgtgagcgcc gcgggagcgt cgggcgggat cccgggcagg gtgaaggagg acagcttctg 1081 ctgcgtgatc tccatgcacg acggcatcgt gctctacacc acgcccagca tcaccgatgt 1141 gctgggcttt ccgcgcgaca tgtggctggg ccgctccttc atcgactttg tgcacctcaa 1201 ggaccgggcc accttcgcca gccagatcac gacgggcata ccgatcgccg agtcgcgggg 1261 cagcatgccc aaggacgcca agagcacctt ctgcgtgatg ctgcgccgct accggggcct 1321 caagtccggc ggattcgggg tgatcgggcg gccggtgagc tacgagccct tccggctggg 1381 cctgaccttc cgggaggcgc ccgaggaggc gcggccggac aactacatgg tctccaacgg 1441 caccaacatg ctgctcgtca tctgcgccac tccgatcaag agcagctaca aggttcccga 1501 cgagatcctc tcgcagaaga gccccaagtt cgccatccgg cacacggcca ccgggatcat 1561 ctcgcacgtg gacagcgcgg cggtgagtgc gctgggctac ctgccgcagg acctcatcgg 1621 caggagcatc atggacttct accaccacga ggacctcagc gtcatgaagg agacctacga 1681 gacggtgatg aagaagggcc aaacggcggg cgcctccttc tgcagcaagc cctaccgctt 1741 cctcatccag aacggctgct acgtcctcct ggagaccgag tggaccagct tcgtaaatcc 1801 gtggtcgcgc aagctggagt tcgtggtcgg ccatcacagg gtgtttcagg gtcccaaaca 1861 gtgcaacgtc ttcgaggcgg cacccacgtg caagctcaag atatcggagg aggcccagaa 1921 ccggaacacg cgcatcaagg aggacatcgt gaagcggctg gcggagaccg tctcccgtcc 1981 gtcggacacg gtcaagcagg aggtctcccg ccgctgccag gcgctggcca gcttcatgga 2041 gaccctcatg gacgaggtct cgcgcgccga cctcaagctg gagctgccgc acgagaacga 2101 gctgaccgtc tcggagcgcg acagcgtgat gctcggcgag atctcgccgc accacgacta 2161 ctatgacagt aagagctcca ctgagacgcc gcccagctac aaccagctaa actataacga 2221 gaacctgctg cgttttttca acagcaagcc ggtcacggcg ccggcggagc tcgatccgcc 2281 caagacggag ccgccgccgg agccgcggag cacctgtgtc agtggcggag ccagtggacc 2341 gatgagtccc gtccacgagg gcagcggggg cagcggctcc tccgggaact tcaccaccgc 2401 cagtaatata cacatgagca gtgtgaccaa tacgagcatt gcgggaaccg gtggaactgg 2461 aacgggaact ggtacgggaa ctggtactgg aactggtaca ggcacaggca caggaaccgg 2521 taccaaaaca ggaaccggaa cggggaatgg aaccaactct ggaaccaccg ttaccaccac 2581 tggcaccacc agctcctcca gaggaggcgg cgccgcctct ccgcccatta ccctcaccga 2641 atccctgctc aacaagcaca atgacgaaat ggaaaagttc atgctgaaga agcaccgcga 2701 atcgcgggga cgcaccgggg agaagagcaa gaagtccgcc aatgacaccc tcaagatgct 2761 cgagtacagt ggcccgggac acgggatcaa gcggggcggc tcccactcgt gggagggcga 2821 ggcgaacaag cccaagcagc agctgaccct gggaaccggc gatgccggga gcaagggagc 2881 gggagccggc ggaggtggag gcgggggagc agcagcgggc tccggcgggg tgggatcggg 2941 aggagcaggg gtggcaggcg gaggaggagg aggaagcgtg ccaccggagg gcaggaccac 3001 aaccacgaca tcgggagcgg gaaccccggg cggcggcgga gggggcggag ccggaggagc 3061 ggcgggcgcc acctcctcct cggtgggcag ctccacgcca ggaccctcct cctatccctc 3121 ctgcacgcag aacatcaatc tctggccgcc gttctcggtg ggcatcaccc cgcccgtcca 3181 ctccacgcac acggccatgg cccagagcag cttctcctcc gccggcctct tccccacctt 3241 ctactacatc cccgccgcct ccctgacgcc caccagtccc acgcgctcgc cccggatcca 3301 caagcatccg cacaagagtg gcgtggagct gcccaccacc tcgcagcagg cggcggctgc 3361 agcggcggcc gcccaggcca tgccgctcca gtacatggcc ggcgtgatgt acccgcatcc 3421 ctccctcttc tacacgcatc cggcggcggc ggccgccacg gccatgatgt accagccgat 3481 gcccttcccc gggatggcca acgccctgca gattccggag cggccgttgg gctcccagtc 3541 ggcgtacaac aagacggtgt atacggccac gccagtgtcc atgacaaaga aggtgcccgg 3601 cgcattccac tcggtcacca ctcccgccca ggtgcaacgg ccctcctcgc agaccacctc 3661 cgtcaaggcg gagggtgcgg ggtccaatgc ggcgggtgct gatccctgca agaaggaggt 3721 ggtggcgccc gactcctcgc ccatcgcgtc cgtgatgggc gactacaact ccgacccgcc 3781 ctgcagcagc aatcccacca acaacaagaa atacacggac agcaatggaa acagcgacga 3841 catggatggc tccagcttct cctcgttcta ctcgtccttc atcaagacca ccgacggctc 3901 ggagagtccg ccagacaccg aaaaggaccc caagcatcgt aagataaaga gcctcagcac 3961 ttcggagaac aagatcatgg aacaccccga ggaggaccag acgcaacacg gggatgggta 4021 gttgccaaac ccgcagttgc tgctgaccga cgtacacaat cgggtgcacc aagtcgatcc 4081 ctaggacgaa ccaaccagca agcagcaaac agcaggcacc gaggaccagc agggatccta 4141 gagaagattc tccgagtcta cgaatctgat tgaagcaacg aaacaccgaa tgagatggtc 4201 cttcaaggat ctgtaaaatc aatgaaaaca gagtataatg tgtagatctc aaatcagaaa 4261 catcaaatgt gttaaaattc ttcaaacact gcatctcagc ttaaaatatt ttatttatat 4321 ttcgtttaaa cagtcttata tttatttatt ccgttgcgta ataaattgca aaactccaaa 4381 ccccga