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LOCUS XM_017150962 1578 bp mRNA linear INV 09-DEC-2024 factor-like (Traf-like), transcript variant X2, mRNA. ACCESSION XM_017150962 VERSION XM_017150962.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017150962.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1578 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1578 /gene="Traf-like" /note="TNF-receptor-associated factor-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108063760" CDS 123..1409 /gene="Traf-like" /codon_start=1 /product="TNF receptor-associated factor 3 isoform X2" /protein_id="XP_017006451.1" /db_xref="GeneID:108063760" /translation="MRLQEHLIHCGQVLEECPNGCQAFIPRIRMRSHQKECPRTSQQN QSQNHVNNRMSVSMDRLDRQSDQRLLVIEQDVGTIRSVLNEEIRQRLHLITDVGNIRK QNQVVEDWTRDTEKAMDELRHQMDEETRRRVFAIEQNQLDVQYCCDITQSLKEQVELR LDEAQKLVNQLSADVTVHQNQLNDNILKLEELIFENERLNREKFFQIEEFLQQINEDI KNKLGNSDYVTSKQATLDYEVKNVKNIVCETEERCDKLDRALHQTMQNLSDLETQMAM QQRIASVQNIRGHLIWRIKDYSKKLDESKQYDTILHSSMFSNKAFSYALRLDIYLNGK GTWKGRNMIACLNVLSGEYDPLLAWPCRLQAEIIIRDQCSNPAEAEDYVKTIFVRKKS DDFIQSNQYFHIPHKVITSRNYLRNDSMFIEVRVLK" misc_feature <276..>992 /gene="Traf-like" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 984..1403 /gene="Traf-like" /note="MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane...; Region: MATH; cl02446" /db_xref="CDD:445786" misc_feature order(1155..1157,1311..1319) /gene="Traf-like" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:238168" polyA_site 1578 /gene="Traf-like" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaggatctgt cgagggactc gaaccagagc catatccccc caataccagc caaccagacg 61 gccaagtcga cgaccatagt caatccccct ttgattacta ttacattact actccccttt 121 ggatgcgact gcaggaacac ctgatccact gcggccaggt gctggaggag tgtcccaacg 181 gctgtcaggc cttcatcccg cgcatccgga tgagatcgca ccagaaggag tgcccccgaa 241 cgagtcagca gaaccagagc cagaaccacg tgaacaatcg gatgagcgtc agcatggacc 301 gtttggatcg acagtccgac cagcgcctcc tagtcatcga gcaggatgtg ggcaccattc 361 gatccgttct caacgaggag atccgccagc gcctgcacct gatcaccgat gtgggaaata 421 tccggaagca gaaccaagtc gtcgaggact ggacgcgcga caccgagaag gcgatggacg 481 agctgcgcca ccagatggac gaggaaacca ggcgcagggt ctttgccatc gaacagaacc 541 agctggatgt ccagtactgc tgtgatatca cccagtcgtt gaaggagcaa gtcgagttga 601 ggttggacga ggcacaaaag ttggttaatc aactctcagc ggacgtgacc gttcaccaga 661 atcagctgaa tgataatatc ctcaagctgg aagagctgat cttcgaaaac gagaggctga 721 acagggaaaa gttctttcag atcgaggaat ttctgcagca gattaatgag gacatcaaaa 781 acaaattggg caacagtgat tatgtcacct cgaagcaggc aacactggac tacgaggtta 841 agaatgttaa gaacattgtg tgcgaaaccg aagagcgttg cgacaaattg gatcgagccc 901 ttcaccagac catgcagaat ttatcggatt tggagaccca aatggccatg cagcagcgca 961 tcgctagtgt gcagaatata agaggccact tgatttggcg catcaaggac tactccaaga 1021 agttggacga gtcgaagcag tacgacacca ttctccacag ctccatgttc tccaataaag 1081 catttagcta tgctcttcgg ctggatatat acttgaacgg caagggcacg tggaagggac 1141 ggaacatgat cgcctgcttg aacgtccttt ccggggagta cgatcccctt ttggcctggc 1201 cctgccgcct ccaggccgag atcatcatcc gggatcagtg ctccaatccg gcggaggccg 1261 aggactatgt gaaaaccata tttgtgcgca agaagagcga cgacttcatc cagagcaacc 1321 agtactttca tataccccac aaggtcatca ccagtcgcaa ctatcttcgc aacgattcca 1381 tgttcattga ggtgcgagtc ctcaagtgat atgcccacta tattgacaag gaaaaattcc 1441 attgatttaa tgcatacata tatataataa tttattccat tgagagcgag ctagaagcct 1501 aaaaaacccg cttacaaaca cgagtagtgt atagtagtgt gtaagtgaat acaaatcgat 1561 gcttggtttt aatatgca