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LOCUS XM_017150646 2450 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017150646 VERSION XM_017150646.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017150646.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2450 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2450 /gene="Cfp1" /note="CXXC finger protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108063526" CDS 99..1910 /gene="Cfp1" /codon_start=1 /product="CXXC-type zinc finger protein 1 isoform X2" /protein_id="XP_017006135.2" /db_xref="GeneID:108063526" /translation="MADKRKYKKTKEEIRREIAREFDLPERKSKIATILKQEDQAYCI CRTSDCSRFMIGCDGCEEWYHGDCIGITEKEAKHIKQYYCRRCKKENPELQTIFRLVA TERAAASNAASTSLNAPGLGPPGAPPGAPMATNLQPPPVATTTTTTTAAATATMKRKN SNAREPKAGKRCGTCEGCRRPNCNQCDACRVRVGHKPRCIFRNCVAQATGGKEASAPQ KKREKASAAAAAASKDRKMKANLRAASPEVYLNPELEGMRQCHGPGCCCQARPQSKYC SDKCGFNLATNRIFQVLPQRLQEWNLTPCRAAEDTRKHLESIRSKQSLVRFALAELEK RSEELNMVVERANRSSIDTLNPHDTGDMEDEQSMYCITCGHEIHSRTAIKHMEKCFNK YESQASFGSIFQTRMEGNNMFCDFYNPASKTYCKRLRVLCPEHSKDPKVNDTDVCGSP LVNQDFGPTGEFCRAPKKNCFKHYAWEKIRRAEIDLERVRQWLKMDDLMEQERMLRQQ LTSRANLLGLMLHSTYNHEVMDELVRKQQEHLAEFEKQKRRQAHQQQLQAQQQLYQEK QQQQQQQQQQLLLQQQQQQQQAQLQQQTQLIYLQRKP" misc_feature 222..359 /gene="Cfp1" /note="PHD finger found in CXXC-type zinc finger protein 1 (Cfp1); Region: PHD_Cfp1; cd15553" /db_xref="CDD:277028" misc_feature order(222..224,255..269,279..281,342..344) /gene="Cfp1" /note="putative histone H3 binding site [polypeptide binding]; other site" /db_xref="CDD:277028" misc_feature 588..710 /gene="Cfp1" /note="CXXC zinc finger domain; Region: zf-CXXC; pfam02008" /db_xref="CDD:366873" misc_feature 951..1655 /gene="Cfp1" /note="CpG binding protein C-terminal domain; Region: CpG_bind_C; pfam12269" /db_xref="CDD:463514" ORIGIN 1 ctatcgctcg cagtgccatc accatcccta atagtttatt tttttctggg acgggacgtt 61 aaatcgcgga cttgaattct cggcgagatt ggagcggcat ggcggacaag cggaaataca 121 agaaaaccaa agaggagatc cggcgggaga ttgcccggga attcgatctg ccggagcgca 181 aatcgaagat agccaccatt ctaaagcagg aggatcaggc gtactgcatc tgccgcacct 241 ccgactgctc caggttcatg atcggctgcg atggctgcga ggagtggtac cacggcgact 301 gcatcgggat caccgagaag gaggccaagc acatcaagca gtactactgc cgccgctgca 361 agaaggagaa tcccgagctg cagaccatat tccgcctggt ggccaccgaa cgggcggccg 421 cctcgaatgc cgcctccacg agtctgaatg ccccgggatt gggtccgccg ggtgctcctc 481 caggtgctcc aatggccacc aacctccagc caccgccggt ggccaccaca accacaacga 541 ccactgcagc ggcgactgca acaatgaagc gcaagaacag caatgcccgc gaaccgaagg 601 cgggcaagcg atgcggcacc tgcgagggct gccggcgtcc caattgcaat cagtgcgacg 661 cctgccgggt gcgcgtgggc cacaagccgc gctgcatatt ccgcaactgc gtggcccagg 721 cgacgggcgg caaggaggcg tcggcgccgc agaagaagcg ggagaaagcc tccgccgccg 781 ccgccgccgc ttcgaaagat cgcaagatga aggcgaacct gcgggcggcc agtcccgagg 841 tctacctcaa tcccgagctg gaggggatgc gccagtgcca cggacccggc tgctgctgcc 901 aggcgaggcc gcagagcaag tactgcagcg acaagtgcgg ctttaattta gccaccaaca 961 ggatttttca ggttctgccg cagcgcctgc aggagtggaa cctgacgccc tgtcgcgccg 1021 ccgaggacac aaggaagcac ctagagagca ttcgctcgaa gcagtccctc gtgcgcttcg 1081 ccctcgccga gctggagaag cgctccgagg agctgaacat ggtggtggag cgggccaatc 1141 gcagctccat cgacacactg aacccgcacg acaccggcga catggaggac gagcagagca 1201 tgtactgcat cacctgcggc cacgagatcc actcgcgcac ggccatcaag cacatggaga 1261 agtgcttcaa caagtacgag tcgcaggcga gcttcggcag catcttccag acgcgcatgg 1321 agggcaacaa tatgttctgc gacttctaca acccggcaag taagacgtat tgtaagcggt 1381 taagggtgct gtgtcccgag cacagcaagg atcccaaggt gaacgacacg gatgtgtgtg 1441 gctcgccgct ggtcaaccag gacttcggtc ccacgggcga gttttgccgg gcgccgaaga 1501 agaactgctt caagcactac gcgtgggaga agatacggcg ggcggagatc gatctggagc 1561 gtgtgcgcca gtggctcaag atggacgacc tgatggagca ggagcgcatg ctgcgacagc 1621 aactgacctc gcgtgccaat ctgctcggcc tgatgctgca ctccacctac aatcacgagg 1681 tgatggacga gctggtgcgc aagcagcagg agcatctggc cgagttcgag aagcaaaagc 1741 ggcggcaggc gcatcagcag cagctgcagg cgcagcagca actctaccag gagaagcagc 1801 aacagcaaca gcagcagcaa cagcaattgc tactgcagca gcaacagcag cagcagcagg 1861 cgcagctgca gcagcaaact caactcatct acctgcagcg aaagccatag atttccattc 1921 ctctaagcgt agttaaagca agcaataaac tgacatgcaa gaaacccttt tgtacgagag 1981 cccacaaatc tattatattt ttaaccactt acccgtttct ccgggcaacc ggataacata 2041 atttaagttc ccccaaagga ataaaaggaa aggaagaggt tgctacgcgc cgggatcggg 2101 gaacgcccct gtttgttatt gaaaactaag catcaaatat gcatttattg atagcaacct 2161 gcccgcaaaa gggaaaggct acactgggcc agctcaacca gggaaatcat tcaacttgtc 2221 ttaagtattt tagagcaatc tattgtattt tgcctagact aagggtacta tatagtttaa 2281 taataaattt aattttagtt taagcctctt gaattatgtg tgttaatttt ataagatcgc 2341 aaattgtttg cgttcaagaa aactcttttt ctttgtttct ttatgatttt ttgtaatacc 2401 caaaaaagtt acaaattgtg ttctgtttat gttttttttc gctgtaacta