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LOCUS XM_017149869 3822 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017149869 VERSION XM_017149869.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017149869.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3822 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3822 /gene="LIMK1" /note="LIM domain kinase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108062968" CDS 22..3258 /gene="LIMK1" /codon_start=1 /product="LIM domain kinase 1 isoform X2" /protein_id="XP_017005358.3" /db_xref="GeneID:108062968" /translation="MCFFFNSNPIRTNQNVVYFLIMFCNFQKIDVNLTNLHIGDRILE VNGTPVSDSSVEQIDKLIRSNEKMLQLTVEHDPVQVCRSCSQADIQRAMSASTLILPL STSASSVEVGRERLYKTPGEPGEQGSKARKLRQATNASATIPPAAGAAIAMTQLKEKE RCSSLSKLLDEQHQAQQHSAHPQLYDLSRTQSCRVVQKPQRIFRASDLVIGEKLGEGF FGKVFKVTHRQSGEVMVLKELHRADEEAQRNFIKEVAVLRLLDHRHVLKFIGVLYKEK KLHMVTEYVAGGCLKELIHDPSQSLSWPQRVCLARDIACGMSYLHSMNIIHRDLNSMN CLVREDRSVIVADFGLARSVDAPRLPGGVGASADRAGGGSMTPGGYGSGANSDAAMSP SGTLRRSKSRQRRQRYTVVGNPYWMAPEMMKGLKYDEKVDVFSFGIMLCEIIGRVEAD PDFMPRNSDFSLNQQEFREKFCAQCPEPFVKVAFVCCDLNPDMRPCFETLHVWLLRLA DDLAAERVPPERLLHEIETFQEWYASSEDALSPTSQRSLNNLDELVKIAAEGESEISP VEKEKENLVIKPQDIPKSPHLGKDFSPSGERLRDSMRARRRQRFLGAQEERRNLTPET ESKERALKKALKKCRPFGERGYLVDLRPGAELQLQDVRDLNTYSDVDSSCDTSLNYHE VNNLPAPQAPQDAEEVKSAKEEEVLDQEGANHRLAIDDMRNRLHQCRSKFEHLEEASR RNFNQSQHSMRNFFKTPPVALKMFQRLEHEAAALNGGANCPPPPPRTQRINQTPIFGR KNPPIASSVGQRLQHGESLENLTSSGGASKQLATPAPKRSKAATTTKVQPPLFLPPSI TSSVNGNVSTSTTTTTTSCPPTAPDWLPKKHKLTLPLPSPHPQAAQRSSHNHRPATSN GKGKVVRPPPGRTAQGIPASNGVSPTRSTRPGSPSKHLAQRHTAATAQRLTNAAASHQ QQQQQQQSARTTRLNILSPEKVHRLGARLSDQKQKMREEAAATAAASAVGGGAGAGCA ASPAAGSLNGHLQGHRTGASGSANPAGGERRRRAAPPPPVRTHFNTRC" misc_feature <115..252 /gene="LIMK1" /note="canonical PDZ domain; Region: PDZ_canonical; cl49608" /db_xref="CDD:483948" misc_feature 661..1554 /gene="LIMK1" /note="The protein kinase superfamily is mainly composed of the catalytic domains of serine/threonine-specific and tyrosine-specific protein kinases. It also includes RIO kinases, which are atypical serine protein kinases, aminoglycoside phosphotransferases; Region: Protein Kinases, catalytic domain; cl21453" /db_xref="CDD:473864" misc_feature order(661..672,679..681,685..687,724..726,730..732, 817..819,865..876,1006..1008,1018..1023,1027..1029, 1057..1062) /gene="LIMK1" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270870" polyA_site 3822 /gene="LIMK1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tctcatttgc gtcttttgtc aatgtgtttt tttttcaata gtaatcccat aaggacaaat 61 caaaatgttg tatatttttt aataatgttt tgcaattttc aaaagatcga tgtaaatctg 121 acgaacttgc acattggcga ccgcatcctg gaggtgaacg gcacgcccgt cagcgattca 181 tccgtggagc aaatcgacaa gctgatacgc agcaacgaaa agatgctcca gctgaccgtc 241 gagcacgatc cggtgcaggt gtgtcgctcc tgcagccaag cggacatcca gagggccatg 301 tccgcgtcca cgctcatcct gccgctcagc acatcggcct ccagcgtgga ggtgggccgg 361 gagcggctct acaagacgcc gggcgaaccc ggcgagcagg gatcgaaggc gcggaagctg 421 cggcaggcca caaatgcctc ggccacgata ccaccggcag ccggggctgc catcgccatg 481 acgcagctga aggagaagga gcgctgctcc agtctgtcca agctgctgga cgaacagcac 541 caggcgcaac agcattcggc ccatccgcag ctctacgatc tgtccaggac gcagtcgtgt 601 cgagtggtgc agaagccgca gcggatcttc cgcgcatcgg atctggttat aggcgagaag 661 ctgggcgagg gcttcttcgg caaagtcttc aaggtgacgc atcgccagag cggcgaggtg 721 atggtcctca aggagctgca tcgcgccgac gaggaggccc agcggaactt catcaaggag 781 gtggccgttc tccgcctgct cgaccatcgc cacgtgctca agttcattgg cgtgctgtac 841 aaggagaaga agctgcatat ggtcacggag tacgtggccg gcggctgcct caaggagctc 901 atccacgatc ccagccagag cctctcctgg ccgcagcgcg tctgcctggc cagggacatt 961 gcctgcggca tgagctacct gcactcgatg aacatcatcc atcgtgatct gaactcgatg 1021 aactgcctgg tgcgcgagga tcgttcggtt atagtggcgg actttggcct ggcacgcagt 1081 gtggatgcac cgcgtctgcc gggcggcgtt ggcgcctccg cggaccgcgc aggtggcggc 1141 tccatgacgc cgggcggcta tggatctgga gccaacagcg atgcggccat gtcgcccagc 1201 ggaacgctca ggcgcagcaa gagcaggcag cgaaggcagc gctacacggt ggtcgggaat 1261 ccctactgga tggcgcccga gatgatgaag ggcctgaagt acgatgagaa ggtcgacgtc 1321 ttctccttcg gcatcatgtt gtgcgagatc attggacgcg tggaagccga tcccgatttc 1381 atgccccgca actcggactt cagcctcaac cagcaggagt tccgcgagaa gttctgcgcc 1441 cagtgccccg agcccttcgt caaagtggcc ttcgtgtgct gcgacctcaa tccggacatg 1501 cgtccgtgct tcgagacgct gcacgtgtgg ctcctccggc tggccgacga cctggccgcc 1561 gagcgtgtgc cgcccgagcg gctgctgcac gagatcgaga cgttccagga gtggtacgcc 1621 agctccgagg acgccctgtc gcccacctcc cagcgcagcc tgaataacct cgatgagctg 1681 gtcaagattg cggcggaggg ggaatcggaa atctcgcccg tcgaaaagga aaaggagaat 1741 ctggtgatca agccgcagga catacccaag tcaccgcacc tgggcaagga tttctcgccc 1801 agcggcgaga gattgcgcga cagcatgcgg gccaggcggc gccagcgttt cttgggcgcc 1861 caggaggagc ggcgcaacct tacgcccgaa acggagtcca aggagcgggc cctgaagaag 1921 gccctcaaga agtgtcggcc gtttggcgag aggggctacc tggtggattt gcggcccggt 1981 gccgagctgc agctgcagga tgtccgggat ctgaacacat attccgatgt ggactccagt 2041 tgcgatacga gtttgaatta ccatgaggtg aataacttgc cagcaccgca ggcgccgcaa 2101 gacgcggagg aggtcaagtc ggccaaggag gaggaagtac tggaccagga gggcgccaac 2161 catcggctgg ccatcgacga tatgcgcaac cggctgcatc agtgccgcag caaattcgag 2221 catctggagg aggccagccg gcggaacttc aaccaatcgc agcactcgat gcgcaacttc 2281 ttcaagaccc caccggtggc cctcaagatg ttccagcgcc tggagcacga ggcggcggca 2341 ctgaatggtg gcgccaattg cccgccgcca ccgccgcgca ctcagcgcat caatcagacg 2401 cccattttcg ggcgcaagaa tccgcccatc gcatcgagtg tgggccaaag gctgcagcac 2461 ggcgaatccc tggagaacct gacctccagc ggaggagcca gcaaacagtt ggccacaccg 2521 gcgcccaaaa ggagcaaggc tgcgacgacg acgaaggtcc agcctccact cttcctgccg 2581 cccagcatca caagtagcgt caatggaaat gtgagcacca gcaccaccac cacgaccacc 2641 agttgtccac caaccgctcc agattggctg ccgaaaaagc acaagctgac gctgccactg 2701 ccctcgccgc atccgcaagc tgcacagcga tcgagccaca atcatcgccc ggcgacgagc 2761 aatggcaagg gaaaggtggt gaggccaccg cccggccgca cagctcaggg aatccccgcc 2821 agcaacggcg tctcgcccac caggagcacc cggccgggct cgcccagcaa gcatttggcc 2881 cagaggcata ccgccgccac ggcccagcga ctgacaaatg ctgccgcttc gcaccagcaa 2941 cagcaacagc agcaacagtc cgcgaggacg acgcgcctga acatcctcag tccggagaag 3001 gtgcatcgcc tgggagcccg tctcagcgat cagaagcaga aaatgcgcga agaggccgcg 3061 gcgacagcgg ctgcctcagc cgtcggtgga ggagcaggag caggatgtgc ggcctcgcca 3121 gcggcgggat ctttgaatgg tcacctgcag ggtcatcgaa ccggggcatc cggatcggcg 3181 aatccggcgg gcggtgaaag gaggaggcga gcggctccac cgccaccagt gcgcacgcat 3241 ttcaatacgc gctgctagcc actcgcatat atgctcgatt gtcaagtgtt gtgcaaagtt 3301 tattgttcca ctcaggaagc tctttttttt taacgtccta actgttttaa tttgtaatat 3361 cgttcgcttt tgtactgtac agatgcagaa atacctagat tcctagtata ttccacaatt 3421 taagcataat ccactaaatt tctgtaacaa ttccataatt cctatgtata acgagacatt 3481 ttgtataaat atgtaatgcc ttttgaaatg taaataactc gaatcaacca gtgaactgtt 3541 gcgctgttga aaacgcaaat gttatacgca cacatgacaa cattccagga aaagtgttta 3601 ttttatagtt ttcttttttt ttttttgatt ttaacattcg attttaagtt tgaactaaac 3661 gaaggttaag tgcctgttaa gagagaaaac caagaagttg caatatttac atagattgta 3721 taaaaaccaa gcgaataatt atagtaatta agattacagg gtaacagctg ttccgactaa 3781 cctaacgaac tcaactaaaa tgctaagcaa ttaatcgttt aa