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LOCUS XM_017149865 4643 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_017149865 VERSION XM_017149865.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017149865.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4643 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4643 /gene="LIMK1" /note="LIM domain kinase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108062968" CDS 252..4079 /gene="LIMK1" /codon_start=1 /product="LIM domain kinase 1 isoform X3" /protein_id="XP_017005354.2" /db_xref="GeneID:108062968" /translation="MHHQQRLRANGGRGGGGGGSGGSGGMGGHPPLCAHCRGQLLPHP EEPIVMALGQQWHCDCFRCSVCEGHLHNWYFEREGLLYCREDYYGRFGDACQQCTAVI TGPVMVAGEHKFHPECFCCTACGSFIGEGESYALVERSKLYCGQCYGKRSCQPADAKA RITTAGKPMHSIRLVEIPKDATPGLRVDGVALDDGCPTVRITDLFCNFFLWLTSVAEQ CCGAPYRIDVNLTNLHIGDRILEVNGTPVSDSSVEQIDKLIRSNEKMLQLTVEHDPVQ VCRSCSQADIQRAMSASTLILPLSTSASSVEVGRERLYKTPGEPGEQGSKARKLRQAT NASATIPPAAGAAIAMTQLKEKERCSSLSKLLDEQHQAQQHSAHPQLYDLSRTQSCRV VQKPQRIFRASDLVIGEKLGEGFFGKVFKVTHRQSGEVMVLKELHRADEEAQRNFIKE VAVLRLLDHRHVLKFIGVLYKEKKLHMVTEYVAGGCLKELIHDPSQSLSWPQRVCLAR DIACGMSYLHSMNIIHRDLNSMNCLVREDRSVIVADFGLARSVDAPRLPGGVGASADR AGGGSMTPGGYGSGANSDAAMSPSGTLRRSKSRQRRQRYTVVGNPYWMAPEMMKGLKY DEKVDVFSFGIMLCEIIGRVEADPDFMPRNSDFSLNQQEFREKFCAQCPEPFVKVAFV CCDLNPDMRPCFETLHVWLLRLADDLAAERVPPERLLHEIETFQEWYASSEDALSPTS QRSLNNLDELVKIAAEGESEISPVEKEKENLVIKPQDIPKSPHLGKDFSPSGERLRDS MRARRRQRFLGAQEERRNLTPETESKERALKKALKKCRPFGERGYLVDLRPGAELQLQ DVRDLNTYSDVDSSCDTSLNYHEVNNLPAPQAPQDAEEVKSAKEEEVLDQEGANHRLA IDDMRNRLHQCRSKFEHLEEASRRNFNQSQHSMRNFFKTPPVALKMFQRLEHEAAALN GGANCPPPPPRTQRINQTPIFGRKNPPIASSVGQRLQHGESLENLTSSGGASKQLATP APKRSKAATTTKVQPPLFLPPSITSSVNGNVSTSTTTTTTSCPPTAPDWLPKKHKLTL PLPSPHPQAAQRSSHNHRPATSNGKGKVVRPPPGRTAQGIPASNGVSPTRSTRPGSPS KHLAQRHTAATAQRLTNAAASHQQQQQQQQSARTTRLNILSPEKVHRLGARLSDQKQK MREEAAATAAASAVGGGAGAGCAASPAAGSLNGHLQGHRTGASGSANPAGGERRRRAA PPPPVRTHFNTRC" misc_feature 348..515 /gene="LIMK1" /note="The first LIM domain of LIMK (LIM domain Kinase); Region: LIM1_LIMK; cd09364" /db_xref="CDD:188750" misc_feature order(348..350,357..359,420..422,429..431,438..440, 447..449,498..500,507..509) /gene="LIMK1" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188750" misc_feature 534..695 /gene="LIMK1" /note="The second LIM domain of LIMK (LIM domain Kinase); Region: LIM2_LIMK; cd09365" /db_xref="CDD:188751" misc_feature order(534..536,543..545,594..596,603..605,612..614, 621..623,681..683,690..692) /gene="LIMK1" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188751" misc_feature 756..1073 /gene="LIMK1" /note="PDZ domain of LIM Kinase (LIMK) family, and related domains; Region: PDZ_LIMK-like; cd06754" /db_xref="CDD:467236" misc_feature order(804..824,855..857,915..917,1005..1007,1017..1019, 1026..1031) /gene="LIMK1" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467236" misc_feature 1482..2375 /gene="LIMK1" /note="The protein kinase superfamily is mainly composed of the catalytic domains of serine/threonine-specific and tyrosine-specific protein kinases. It also includes RIO kinases, which are atypical serine protein kinases, aminoglycoside phosphotransferases; Region: Protein Kinases, catalytic domain; cl21453" /db_xref="CDD:473864" misc_feature order(1482..1493,1500..1502,1506..1508,1545..1547, 1551..1553,1638..1640,1686..1697,1827..1829,1839..1844, 1848..1850,1878..1883) /gene="LIMK1" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270870" polyA_site 4643 /gene="LIMK1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tatcatgtgg ttgattttgt gaagttaatc gatatcaggt ggttgttttg ttttgttttg 61 tttattatgc atttcttttt tattgtttga gttagcgagt tgtgatttaa attagatcga 121 tttcggccgt cgttgttaat aattgcatgg cgggaattgg aattaaatga gaaaaatgtg 181 cgacaagtca atagcaatac aagcgaacaa ttattgctaa cgtaatcgcg gccaaggcac 241 aaaaacattc catgcatcat cagcagcgcc tgcgggcaaa tggtggacga ggtggaggag 301 gaggcggctc tggaggatcg ggaggaatgg gaggacatcc gccgctgtgc gcccattgcc 361 ggggccaact gctgccccat ccggaggagc ccatcgtgat ggccctgggt cagcaatggc 421 actgcgactg cttccgctgc tccgtctgcg agggccacct gcacaactgg tacttcgagc 481 gcgagggact actgtactgc cgcgaggact actacggccg gttcggcgat gcctgccagc 541 agtgcacggc cgttatcacc ggacccgtaa tggtcgccgg cgagcacaaa ttccatccgg 601 agtgcttctg ctgcaccgcc tgcggctcct tcatcggcga gggcgagtcc tatgcgctgg 661 tcgagcggtc gaagctctac tgtggccagt gctacggcaa acgctcctgc cagccggccg 721 atgccaaggc gcggatcacg acggccggca agccgatgca ctccatccgt ctggtcgaga 781 tccccaagga cgccaccccg ggcctgcggg tcgacggagt cgccctggac gacggctgtc 841 ccacagtccg aattacagac ctgttctgta acttcttcct ttggctcacc tcggtggcgg 901 aacagtgctg tggggcgccc tataggatcg atgtaaatct gacgaacttg cacattggcg 961 accgcatcct ggaggtgaac ggcacgcccg tcagcgattc atccgtggag caaatcgaca 1021 agctgatacg cagcaacgaa aagatgctcc agctgaccgt cgagcacgat ccggtgcagg 1081 tgtgtcgctc ctgcagccaa gcggacatcc agagggccat gtccgcgtcc acgctcatcc 1141 tgccgctcag cacatcggcc tccagcgtgg aggtgggccg ggagcggctc tacaagacgc 1201 cgggcgaacc cggcgagcag ggatcgaagg cgcggaagct gcggcaggcc acaaatgcct 1261 cggccacgat accaccggca gccggggctg ccatcgccat gacgcagctg aaggagaagg 1321 agcgctgctc cagtctgtcc aagctgctgg acgaacagca ccaggcgcaa cagcattcgg 1381 cccatccgca gctctacgat ctgtccagga cgcagtcgtg tcgagtggtg cagaagccgc 1441 agcggatctt ccgcgcatcg gatctggtta taggcgagaa gctgggcgag ggcttcttcg 1501 gcaaagtctt caaggtgacg catcgccaga gcggcgaggt gatggtcctc aaggagctgc 1561 atcgcgccga cgaggaggcc cagcggaact tcatcaagga ggtggccgtt ctccgcctgc 1621 tcgaccatcg ccacgtgctc aagttcattg gcgtgctgta caaggagaag aagctgcata 1681 tggtcacgga gtacgtggcc ggcggctgcc tcaaggagct catccacgat cccagccaga 1741 gcctctcctg gccgcagcgc gtctgcctgg ccagggacat tgcctgcggc atgagctacc 1801 tgcactcgat gaacatcatc catcgtgatc tgaactcgat gaactgcctg gtgcgcgagg 1861 atcgttcggt tatagtggcg gactttggcc tggcacgcag tgtggatgca ccgcgtctgc 1921 cgggcggcgt tggcgcctcc gcggaccgcg caggtggcgg ctccatgacg ccgggcggct 1981 atggatctgg agccaacagc gatgcggcca tgtcgcccag cggaacgctc aggcgcagca 2041 agagcaggca gcgaaggcag cgctacacgg tggtcgggaa tccctactgg atggcgcccg 2101 agatgatgaa gggcctgaag tacgatgaga aggtcgacgt cttctccttc ggcatcatgt 2161 tgtgcgagat cattggacgc gtggaagccg atcccgattt catgccccgc aactcggact 2221 tcagcctcaa ccagcaggag ttccgcgaga agttctgcgc ccagtgcccc gagcccttcg 2281 tcaaagtggc cttcgtgtgc tgcgacctca atccggacat gcgtccgtgc ttcgagacgc 2341 tgcacgtgtg gctcctccgg ctggccgacg acctggccgc cgagcgtgtg ccgcccgagc 2401 ggctgctgca cgagatcgag acgttccagg agtggtacgc cagctccgag gacgccctgt 2461 cgcccacctc ccagcgcagc ctgaataacc tcgatgagct ggtcaagatt gcggcggagg 2521 gggaatcgga aatctcgccc gtcgaaaagg aaaaggagaa tctggtgatc aagccgcagg 2581 acatacccaa gtcaccgcac ctgggcaagg atttctcgcc cagcggcgag agattgcgcg 2641 acagcatgcg ggccaggcgg cgccagcgtt tcttgggcgc ccaggaggag cggcgcaacc 2701 ttacgcccga aacggagtcc aaggagcggg ccctgaagaa ggccctcaag aagtgtcggc 2761 cgtttggcga gaggggctac ctggtggatt tgcggcccgg tgccgagctg cagctgcagg 2821 atgtccggga tctgaacaca tattccgatg tggactccag ttgcgatacg agtttgaatt 2881 accatgaggt gaataacttg ccagcaccgc aggcgccgca agacgcggag gaggtcaagt 2941 cggccaagga ggaggaagta ctggaccagg agggcgccaa ccatcggctg gccatcgacg 3001 atatgcgcaa ccggctgcat cagtgccgca gcaaattcga gcatctggag gaggccagcc 3061 ggcggaactt caaccaatcg cagcactcga tgcgcaactt cttcaagacc ccaccggtgg 3121 ccctcaagat gttccagcgc ctggagcacg aggcggcggc actgaatggt ggcgccaatt 3181 gcccgccgcc accgccgcgc actcagcgca tcaatcagac gcccattttc gggcgcaaga 3241 atccgcccat cgcatcgagt gtgggccaaa ggctgcagca cggcgaatcc ctggagaacc 3301 tgacctccag cggaggagcc agcaaacagt tggccacacc ggcgcccaaa aggagcaagg 3361 ctgcgacgac gacgaaggtc cagcctccac tcttcctgcc gcccagcatc acaagtagcg 3421 tcaatggaaa tgtgagcacc agcaccacca ccacgaccac cagttgtcca ccaaccgctc 3481 cagattggct gccgaaaaag cacaagctga cgctgccact gccctcgccg catccgcaag 3541 ctgcacagcg atcgagccac aatcatcgcc cggcgacgag caatggcaag ggaaaggtgg 3601 tgaggccacc gcccggccgc acagctcagg gaatccccgc cagcaacggc gtctcgccca 3661 ccaggagcac ccggccgggc tcgcccagca agcatttggc ccagaggcat accgccgcca 3721 cggcccagcg actgacaaat gctgccgctt cgcaccagca acagcaacag cagcaacagt 3781 ccgcgaggac gacgcgcctg aacatcctca gtccggagaa ggtgcatcgc ctgggagccc 3841 gtctcagcga tcagaagcag aaaatgcgcg aagaggccgc ggcgacagcg gctgcctcag 3901 ccgtcggtgg aggagcagga gcaggatgtg cggcctcgcc agcggcggga tctttgaatg 3961 gtcacctgca gggtcatcga accggggcat ccggatcggc gaatccggcg ggcggtgaaa 4021 ggaggaggcg agcggctcca ccgccaccag tgcgcacgca tttcaatacg cgctgctagc 4081 cactcgcata tatgctcgat tgtcaagtgt tgtgcaaagt ttattgttcc actcaggaag 4141 ctcttttttt ttaacgtcct aactgtttta atttgtaata tcgttcgctt ttgtactgta 4201 cagatgcaga aatacctaga ttcctagtat attccacaat ttaagcataa tccactaaat 4261 ttctgtaaca attccataat tcctatgtat aacgagacat tttgtataaa tatgtaatgc 4321 cttttgaaat gtaaataact cgaatcaacc agtgaactgt tgcgctgttg aaaacgcaaa 4381 tgttatacgc acacatgaca acattccagg aaaagtgttt attttatagt tttctttttt 4441 tttttttgat tttaacattc gattttaagt ttgaactaaa cgaaggttaa gtgcctgtta 4501 agagagaaaa ccaagaagtt gcaatattta catagattgt ataaaaacca agcgaataat 4561 tatagtaatt aagattacag ggtaacagct gttccgacta acctaacgaa ctcaactaaa 4621 atgctaagca attaatcgtt taa