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LOCUS XM_017149855 6242 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017149855 VERSION XM_017149855.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017149855.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6242 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6242 /gene="Pkcdelta" /note="Protein kinase C delta; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108062965" CDS 281..5827 /gene="Pkcdelta" /codon_start=1 /product="uncharacterized protein Pkcdelta isoform X1" /protein_id="XP_017005344.2" /db_xref="GeneID:108062965" /translation="MPLYSDSTNYYYSGGSSQLYSPYYSSGLGLNLGLGSGSSPGSSY TSSYNRSYPASYMVPLSPSSPRSPSSYSSGTSSASSSLHGLGSRYQPKLTTITETGRH SGHSSLMPLTRINSPKYSTAPSYSSSSGASSRYIPARPIAINTADIDVSSSRYRRVIP EKEPTVKEEVVAKRKEKEEEKEEEKAEKKEEPKAPKETDPRSNRRSTIKRNRPVVRLS TIRRRSKERSAESPKKEPQLVVEHQFRDLPPATEPSLSWRQKLAEELAAFPTTSNKKS PGELLRERFYIRDEKEEAAPSLNQARVQELTRPQSAQRTESREQKSSPGEREEEKDKD LEKEESDLEEMQETIRRLSLVQCPTFHDICEDISSDKIDDDLNAGELRRRASIIQEQE QEILNKLQKSNSGSFQLIHLERRSSHDSTTTNDEDLKERSKRRSKKSKKQRHKITAIV EVENAPQAQPVDHHMPSVLELNEENLLVQPLVSISGSGSSSTPSPSPKPKFTVNVETV EEHHQIHKVFKLPKKKTVPKEDGQVEEKDESSSSSLPEGFMKAAPKTTKTSPLKKASK QQKQHVSEAQIFTFDEAAIQQNQQQSQPKTEAKVEGVATPKPIRKAIQKSESGEDFWS QIGSRETLYMSNRKKVFNERQEQLLEEEVPKSPTTKTPTTPKLKSEILIELKTTPSNV TTAGKSSIPKLSSIPLTPTIVRTNQVEGQKAEASKIPTKTKAIITPTPEVDASTTDDI KSKSTMPKKDLPKLITTEEAKSTMTAKTTAATPTKESPKTPQNKVKTSPKAEEATVLL KTDTPTRIAATPQTKPDTPTKDSTPQIKVEKPTKESPTTKAATPIKDSPTPPQTKDLQ TKKAVTPTTPQVNVETPTKDSPTKKIATPTTPQIKVATPTKDSPTNKVTTPTTPQAKA AESTTLSKVDTPATSQIKAATAQTKTDTPATTEIKAATPQKTPQLKPAADEAKSTTPA TTVAQAGKTISPKGVSKQSGNAVAMTTATPTATSTSTAATGKSKLNETAGPKINSGQP AKSPEQQQATAAAVETKINKTTHKEQQQQQQQQLLETAATLVPQTETKTKLTEAAEPT GKSKVQSPKTTKPKSAGKTNVGKKKAATPAATAPAAAATATAATETVTALSESNVTPI NADQFITLAPTKAAKTSPNKQQTLQLQVQHEQHEQQQQQQATNASSPAATGDATTTPT TITIGVAAVNVAVAVGTLGVAPTDAAAAASLSSSNNSCGEGVGNNLSKFATVSNLAQC LRDVDAELEDYIPSSAENSQDDDDDDDSSSNSCDDYSSVDGCANLSASMKKKQRKEKK KQKAKAAAAEGKRFDPHKKIKIDTTNKCYVKEEAPRYPLVATPRPLWKREKIVYSDEN TDDESGSEEGSGGSLDEDSDDESGGDEECSSSSSSASSEDLEVGGAAKGGAGTTTTTV VDSPSSAGTLGVNSGGGASTSSSPSIIRMSTCSNDSGFEGGTAPSSPKKMLETSYTYS QFQKSGRFTAPATVIPRFKNYSVDDFHFLAVLGKGSFGKVLLAELRDTTYYYAIKCLK KDVVLEDDDVDSTLIERKVLALGTKHPYLCHLFCTFQTESHLFFVMEYLNGGDLMFHI QESGRFSEERARFYGAEIISGLKFLHKKGIIYRDLKLDNVLLDYEGHVRIADFGMCKL QIYLDKTADSFCGTPDYMAPEIIKGEKYNQNVDWWSFGVLLYEMLIGQSPFSGCDEDE LFWSICNEIPWFPVYISAEATGILKGLLEKDYTKRIGSQYSPAGDIADHIFFRPIDWG LLEKRQIEPPFKPQVKHPLDTQYFDRVFTRERVRLTPIDKEILASMDQKQFHGFTYTN PHITLD" misc_feature <2321..3586 /gene="Pkcdelta" /note="Herpes virus major outer envelope glycoprotein (BLLF1); Region: Herpes_BLLF1; pfam05109" /db_xref="CDD:282904" misc_feature 4850..5809 /gene="Pkcdelta" /note="Catalytic domain of the Serine/Threonine Kinases, Novel Protein Kinase C theta, delta, and similar proteins; Region: STKc_nPKC_theta_like; cd05592" /db_xref="CDD:270744" misc_feature order(4856..4870,4880..4882,4919..4921,4925..4927, 5024..5026,5072..5077,5081..5083,5093..5095,5099..5101, 5210..5212,5216..5218,5222..5227,5231..5233,5261..5266, 5273..5275,5315..5332,5411..5413,5429..5431,5438..5440) /gene="Pkcdelta" /note="active site" /db_xref="CDD:270744" misc_feature order(4856..4870,4880..4882,4919..4921,4925..4927, 5024..5026,5075..5083,5093..5095,5210..5212,5216..5218, 5222..5227,5231..5233,5261..5266) /gene="Pkcdelta" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270744" misc_feature order(4868..4870,5093..5095,5099..5101,5210..5212, 5216..5218,5222..5224,5273..5275,5315..5332,5411..5413, 5429..5431,5438..5440) /gene="Pkcdelta" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270744" misc_feature order(5261..5299,5303..5332) /gene="Pkcdelta" /note="activation loop (A-loop); other site" /db_xref="CDD:270744" misc_feature 5738..5740 /gene="Pkcdelta" /note="turn motif phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:270744" misc_feature 5783..5800 /gene="Pkcdelta" /note="hydrophobic motif (HM); other site" /db_xref="CDD:270744" polyA_site 6242 /gene="Pkcdelta" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tctattgttt ttttagtctt ttacatctat taatagtcaa acccaaatgt gccatttaga 61 taaagatatt tatgtacgat cccatccgtg agcagcgtaa ttactattaa aatatgagag 121 cctaaacgaa ccgaaaggaa acaactgagc taaaaacagc ggaaaagcgc cggaaaataa 181 gcaaacaaaa atttcgaaca gaacgtctta gtggttcgtg tgtttttctt tatttttgtg 241 tgtgtgggtg tttttttttt tgagtgacta cagcaacaag atgccgctgt attcggattc 301 gaccaactat tactacagtg gcggcagcag ccaactgtat tcgccgtact atagttccgg 361 tttgggcctg aacttgggcc tgggctcggg ctcttccccc ggatcgagct atacgtccag 421 ctacaatcgc tcctatccgg ccagctatat ggtgcctctg agtcccagtt cgccgcgatc 481 gccgagtagc tattcgagcg gcacttcctc agcgagcagc tccctccatg gcttgggttc 541 cagataccaa cccaagttga ctacgattac ggagacgggc aggcacagtg gtcacagcag 601 cctgatgccc ctgacccgca tcaattcacc caagtacagt acagccccga gttatagttc 661 ctcaagcggc gccagtagta gatacatacc ggcaagacct atagctataa atacagccga 721 tatcgatgtg agttcttcca gatatcgcag ggttatcccg gaaaaagagc cgacagtcaa 781 ggaggaggtg gtggctaagc ggaaggagaa ggaggaagag aaggaggaag agaaggcgga 841 aaagaaggag gaacccaagg cccccaagga aacagatcct agatccaatc gcagatccac 901 catcaaacga aatcgccctg tggtccgact ctccaccata cgcagacgca gcaaggaacg 961 cagtgccgag agtcccaaaa aggagccaca gctggtggtg gaacatcagt tcagggatct 1021 gcccccagcc accgagccca gtttgagttg gcgccaaaaa ctggccgagg aactggccgc 1081 ctttcccacc accagcaaca aaaagtcacc aggagagctg ctacgtgagc gattctacat 1141 acgagacgag aaggaggagg cggcgcccag tctcaatcag gccagagtcc aagaactaac 1201 taggccacaa agtgctcaga ggactgagag ccgggaacaa aagagttctc cgggcgaaag 1261 ggaagaggaa aaggataagg acctggaaaa ggaggaatcg gatctcgagg aaatgcagga 1321 gaccattcgc cgcctgagcc tcgtgcagtg ccccacattt catgacattt gcgaggatat 1381 ttcatccgat aagatcgatg atgatctgaa tgccggcgag ctgcgacgcc gggcctcgat 1441 tatccaggaa caggagcagg aaatcctaaa caagctgcag aaatcgaact cgggcagctt 1501 ccagctgatc cacctggagc ggcggtccag tcacgatagc accaccacca acgatgagga 1561 tctcaaggag cggtcgaagc ggcgatcgaa gaagagcaag aagcagcggc acaagatcac 1621 cgccattgtg gaggtggaaa atgcaccaca ggctcagcca gtggatcatc atatgcccag 1681 tgtcttggag ttgaacgagg agaacctatt ggtgcagccc ttggtttcga tttccggttc 1741 aggttcgagc tccaccccga gtcccagtcc caagccaaag ttcaccgtga atgtggagac 1801 ggtggaggag catcatcaga tacacaaggt gttcaagttg cccaagaaaa agacagtgcc 1861 caaggaggat gggcaggtgg aggaaaagga cgagtcgtcg tcgtcgtctc tgcccgaagg 1921 attcatgaag gcagcgccca aaacaaccaa gacatcgcct ttgaagaagg ccagtaagca 1981 gcagaaacag cacgtgagtg aggcacaaat tttcaccttc gatgaggcag ccatacagca 2041 gaatcagcag caatcacagc ccaaaaccga ggccaaggtc gagggcgtgg ccacacccaa 2101 acccattcgc aaggctatac aaaaatccga gagcggcgag gacttttggt cgcaaatcgg 2161 ttcgcgggaa acgctgtaca tgagcaatcg caagaaggtc ttcaacgagc gacaggagca 2221 gctgctggag gaagaagtgc ccaagtcacc aaccacgaag acaccaacga caccgaaact 2281 caagtcggaa attctcatcg agctgaagac aacaccttcg aacgtgacaa ctgctggtaa 2341 atcgtccata ccaaagctat cttcaatacc actaactcca acgattgtga gaaccaacca 2401 agtggaagga cagaaagcag aagcaagcaa aataccaaca aaaaccaagg ctataataac 2461 accaacacct gaagtagacg cttcaacaac cgatgatatt aaatccaagt caacaatgcc 2521 taagaaagac ttgccaaaat taataacaac agaggaagcc aagtcaacaa tgacagccaa 2581 aacgacagct gcaacaccca caaaagaatc accaaaaaca ccacaaaata aagtgaaaac 2641 atcacccaaa gctgaagagg cgactgtgct actgaaaacg gatacaccaa caagaatagc 2701 agcaacacca caaacaaaac cagatacacc aacaaaggat tcaacaccac aaatcaaagt 2761 ggagaaacca acgaaagaat caccaacaac gaaggcagca acaccaatca aggattcacc 2821 aacaccacca caaacaaagg atttacaaac aaaaaaggct gttacaccaa caactccaca 2881 agtaaatgtc gaaactccca ccaaagattc accaacaaaa aagattgcta caccaacaac 2941 accacaaata aaagtcgcaa cacccacaaa agattctcca acaaacaagg ttactacacc 3001 aaccacacca caagcgaagg cagctgaatc aacaacgcta tcaaaagttg acacaccagc 3061 aacatcacaa atcaaagcag caacagcaca aacaaaaact gacacaccag caacaacaga 3121 aatcaaggca gcaacaccac aaaagacacc acaacttaag ccagccgcag atgaggccaa 3181 gtcaacaaca ccagcaacaa ctgttgctca ggcaggaaaa acaatatcac ccaagggggt 3241 gagcaagcaa tctggcaacg ccgtagccat gacaacagca acaccaacag caacatcaac 3301 atcaacagca gcaacaggca aatcaaaatt gaacgaaaca gcagggccaa aaataaatag 3361 cgggcagccg gccaagtcac ctgaacaaca acaggcaacg gcagccgcag tcgaaacgaa 3421 aataaataaa acaacgcaca aggaacaaca gcagcagcag cagcagcaac tgctcgagac 3481 ggcagcaaca ttggtgccac aaacggaaac caaaacgaaa ttgacggaag ccgctgagcc 3541 aacgggcaag tcaaaggtgc aatcaccgaa aacgacaaag ccaaaaagtg ccggcaaaac 3601 aaatgttggc aaaaagaaag ctgcaacgcc agcagcaaca gcgccagcgg cagcagcaac 3661 agcaacagca gcaacagaaa ctgtaacagc tttgtctgag agcaatgtga ccccaatcaa 3721 tgccgatcaa tttataactt tggcccccac aaaggcggcc aaaacatcgc cgaacaagca 3781 acagacattg caattgcaag tgcaacacga gcagcacgag cagcagcagc agcaacaggc 3841 cacaaatgcg tcatcgccgg cggcaacagg cgatgcaacc acaacgccca caacaataac 3901 aattggtgtt gctgctgtta atgttgctgt tgctgttggt actcttggtg ttgctcccac 3961 cgatgctgct gctgctgcct ctctcagcag cagcaacaac agctgcggcg aaggcgtcgg 4021 caataattta tcaaagtttg caacagtatc gaatttggca cagtgtctgc gagacgttga 4081 tgccgagcta gaggactata taccctcgtc ggcggaaaat agccaagacg acgacgacga 4141 cgacgacagc agcagcaaca gttgcgacga ttattccagt gttgacggtt gtgcgaattt 4201 aagcgccagc atgaagaaga agcagcgcaa ggagaagaag aaacagaagg cgaaagccgc 4261 cgccgccgaa ggaaagcgct tcgatccgca caagaagatc aaaatcgata cgacgaacaa 4321 gtgttatgtg aaggaggagg cgccacgcta tccactggtg gccacgccgc gtcccctgtg 4381 gaagcgcgag aagatcgtct attcggatga gaacaccgac gatgagagcg gcagcgagga 4441 gggcagcggc ggctccctgg acgaggacag cgacgacgag agcggcggcg acgaggagtg 4501 cagctcctcg agcagcagcg ccagttccga ggacctcgag gtgggtggcg ccgccaaggg 4561 tggggcggga accaccacca caacggtcgt cgattcaccc agttcggccg gaactctggg 4621 ggtgaacagc ggagggggcg cctccacctc cagctcgccg tccatcatcc ggatgagcac 4681 ctgcagcaac gattccgggt tcgaaggcgg caccgcgccc tccagtccca agaagatgtt 4741 agaaacatca tatacatatt cacaattcca aaaatccgga cgtttcactg cgccagcaac 4801 agtaatacct agatttaaga attattcggt agatgatttc cactttctgg ccgttcttgg 4861 caaaggaagt tttggcaagg ttctgctggc tgagctgcgt gataccacgt actactatgc 4921 catcaagtgc ctgaagaagg atgtcgtcct ggaggacgac gatgtggact cgacgcttat 4981 tgaacgcaag gtcctggcgc tgggcaccaa acatccctat ctgtgtcatc tgttttgcac 5041 cttccaaacg gagagccact tgttctttgt gatggagtat ctaaatggcg gtgatctcat 5101 gttccacatc caggagagcg gtcgcttttc cgaggagcgg gccagattct atggagccga 5161 aataatctcg ggcctcaagt tcctgcacaa aaagggcatt atctataggg atctcaaact 5221 ggataatgtc ctgctggact acgagggaca tgtgcgaatt gccgactttg gcatgtgcaa 5281 attgcaaatc tatttggaca agacggccga tagcttttgc ggcacacccg attatatggc 5341 gcccgaaatc ataaagggtg aaaagtacaa tcagaatgtg gattggtggt cgttcggtgt 5401 gctgctctac gaaatgctga tcggacagtc accattcagt ggctgcgatg aggacgagct 5461 cttctggtcc atttgcaatg aaattccatg gttcccagtc tatatatccg ccgaggccac 5521 cggaatactc aaggggttgc tggagaagga ctatacgaag cgtattggct cgcaatatag 5581 tccagctggt gatatagctg atcatatatt cttccgcccg atcgactggg gattactgga 5641 aaagcggcaa atcgaaccgc ccttcaagcc ccaagtgaaa caccccctgg atacgcaata 5701 tttcgaccgg gtctttacca gggagcgggt gcgactcacc cccatcgata aggagatact 5761 agcctccatg gaccagaagc agttccacgg cttcacctac acaaatcctc acatcaccct 5821 ggactaaatc ttaattaata ctatcctaat taattattta gagcaacagt atttgtatat 5881 gtaaatattt attatggaac aaaaaaaaaa caaagattaa caaacgaata tggaaaagga 5941 aatcgaaatt ttaatacctt ttagctaagc cttaaaaccc acttaaaaat ttgagcgtaa 6001 ttctagtcag ttagctttac ttctatgtct aagtctaatt gtacagatat ccctcctcat 6061 atttacctat atactatata cctatgcata tatatctttt tttttcgcaa attatatttg 6121 ttctgaattt tagcggctaa gcaaaaagtc tacgtctatg agaaataaaa aactaagaaa 6181 tttaaaaaaa taatgcggct atggaaaaat ggttgttgaa taaaaacaat gtgtcaatca 6241 ga