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LOCUS XM_017149843 7394 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_017149843 VERSION XM_017149843.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017149843.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7394 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7394 /gene="Sec16" /note="Secretory 16; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108062963" CDS 154..7005 /gene="Sec16" /codon_start=1 /product="uncharacterized protein Sec16 isoform X1" /protein_id="XP_017005332.2" /db_xref="GeneID:108062963" /translation="MLHNNAPWLPPHQQQQQQQQQAPQQHATPQQQQQQQQPHPAQQQ HQQHQQLYASQMFQQQQPNYWPEDQQQQQQSLNYNNYFAGQQQQLPLQQQQQQLPLQQ QQPQQPTQQQHNIQQQLYYPTHQQPQVPAPAEPALDSFDNNNSGGGGGGGGWGDWGDW NDNSNNNNSLSNEALLEPSGQLLEDSFNVQSSPGSWQAFATGNSVNNNVELPPPTDQQ AASLPQQPEVGQEPELDAIVPPQAFQNQPPTSLSAFAAPPFAVVAPPAPLAGGVAPPA PLAGVVAPPTDAAGIAPPAALPPSLTPAAGNPFKRSAGLNKRVNIMASPAGGAPSPPA PAVAPLAPPVAPPPGEAHGDGFNLLAAPPVEASPGAPIPAATASLYAQPAVDNQEVLS APNDERAQYLQTSHLSEQLGEGEADQDAGLLPPPGLSRLVLGQPELDSQQQRLVTGAT EQPALDVAQAAALHMQERQADGEDTSDDGGQQVRNIQTPPRRVVTGVETNAPSLREQV LDGENLEDREAIPPPALAELPPTLSVHHNIQPDEPELQLHHINQPPQAVTPQPQQPQQ PQLPLLQQQQPQQQEKKRAAAGGRRANASLDLESEDESDEFLQSERERDRERERRDLM DERQGRGRSHGHYTYDGETEDSVRGAAHHETKSLRETQHRRSNNHDSTRSRRHPAEPK AERERERERERDRERERHWRRRSNKYHSGGEDQERSYDHSRRYNNSNYDGESDNPEIN HLGEGELDGGGTEGRGGGGRSSKTGRSQRRSAAEEPSFDYYEPERDRDHDRQYSRRSN KQPSSADKSRSSGGRRSYENQGRSGRPEEGRRRHQDLRNWDGGYEEYRRKSSRNSDLE KERINGGNTSGGGGGGSGGGGSGSGKRRNQYDQYGGAYDSYSMYEQMSRNPHAYADMY AKFYGQMINSMTAAAVSAAASKSGVPGGAAAAAAAIPGLVPGAVPVSAAQLVAAAAAA SGGSVSGSSEAALLRERERYTHAYITQANEFHRQQYKELIYQQQQQQQQQQHHREDPL NSSFNITEDNASFYGSRGGSIYNQYHPYPSLSSARSLSNLNGDGRNSRCGPYYAGSEC GLDIRAAAEAAPSTYGGLATAGTVTTTAVARPPRRRTPLQFNRPHLVASYAMSLLLKV KPKYAGRGRLRNDVEVAPPRIRDGTSSLLRMYPGPLQGRKLHKDKIISFCKEQIRLGP TKGCTVLYATQKSPQGSVVKYRASHALMWHLLILLLRQNGYIADTDVGDLLLENQQEY PYEPSEYEAENEPDVEAEQEAAAPGEKSVESDLDSESAAGAAAATPEETPAGGATNGG DAGAPQSPLSEQAATDKFRSYVLRGNVEEALQWATDNGLWTHAFFLALYEDRYALTDV AQKFLNRAIKANDPLQTLYQMKSCQTPACVSQLRDEQWGDWRSHLSILVTNKSRQPKY DRSSVVALGDTLFQRGDIYAAHFCYLVAQEEFGRYDSSATELTTLTANVPRLILLGSS HYKHFNEFASNEAIIMTEIYEYARSLFDPKFSIAHFQHYKFLLATRILDYGQHFRCTN YLEQIARHIELKPESYDIDFIQRVCGLAERLRYHDPILINRVSFASPPNAASKDSAAP EEKAWLRQLRSLADVQPQQEQLQLHHQVQQQQQEQNDIDQQFAEVNKQFRELNMQYDG GNLESTLQTQLPPVEQQQQPAQSEVPPPQQQYYEPPPAAAAAAAQVPAESDPYGQQQG SYYDPNAGMQHQYDPNAGIQHQYDPNTEAHHQYEHGQIEPASEAYQPAADPSAAPAGY GYDYWSGTQQPPYGDEPALKDEAEEEEDEQQILQQAQQQQQLRVAKQQQEQHTRTNGA ANSNNNRFKSNALKQEKGSSITALRKRQEASRTATIAAAAAAIAQITPAKVATAAAAA TTTAATSAKAFNLNDVSSFSHIHKRHQATSSSSSNNKPATATAAAATFTTVAALPNQL PSCRKSNSQNRTYLGTPKTLTTPTRFIAAKAATVTATPTAPTTLTTTSTSLGARGSST KRVNFNLPTTIAESEQEFQHELNFEEADEEQEEVEEDEEENALALAQARPSGHLSRKP HIVFNGTYPIDMPLTQSKSSSYDPEANADRGDLQRYRNYMLHDYVIDEDAEGEEQAQE EQEEDEYADEDLFPYAHDADESFDDGDYYTHELLNKYGIIPSKEGAQRTPATVEAATI TSNSASKPQHVWSMEELIANPAIPLNYKKMCTEVEQSLSRFESYLDSKKEQQQMPPPL AAVRTFDIDAPTRRGHRSSTSSANAGLALRSKKKL" misc_feature <784..1518 /gene="Sec16" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature <787..>1080 /gene="Sec16" /note="Kinetoplastid RNA Editing Protein A (KREPA); Region: KREPA; cl49620" /db_xref="CDD:483960" misc_feature 3685..4914 /gene="Sec16" /note="Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16; Region: ACE1-Sec16-like; cd09233" /db_xref="CDD:187750" misc_feature order(4150..4155,4159..4164,4168..4182,4186..4188, 4192..4194,4222..4224,4228..4230,4234..4239,4243..4248, 4258..4260,4276..4278,4297..4299,4327..4329,4342..4344, 4351..4353,4435..4440) /gene="Sec16" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187750" misc_feature order(4681..4683,4747..4752,4756..4761,4768..4773, 4780..4782,4861..4866,4873..4878,4885..4887,4897..4899) /gene="Sec16" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:187750" ORIGIN 1 cgaaagtcga gttggcattt gggagatttg ctgtgttcgg atcgaaaaaa ttccaaagtt 61 aattgtttaa aagccaagac gactgcttta gcaatcagcc aacaagtaaa tgtattgttt 121 agtcaactgc cagaggacag taccaaatcc aacatgttgc acaacaatgc gccctggctg 181 ccaccgcatc agcagcagca gcagcagcag caacaggccc cgcagcaaca tgcaacgccc 241 caacagcagc agcagcagca gcaacctcat cctgcacagc agcagcatca gcagcatcag 301 cagctctacg ccagccaaat gttccagcaa cagcagccaa attactggcc ggaggatcag 361 cagcagcagc agcagtcgct gaactacaat aactactttg caggacagca gcagcaactg 421 ccactgcagc agcaacagca gcaactgcca ctgcagcaac agcagccaca acagcctacg 481 cagcagcaac ataatatcca gcagcaactg tattatccca ctcaccagca gccacaagtc 541 ccggctccag cggaacccgc tctggactcg tttgacaaca ataatagcgg cggaggagga 601 ggaggaggtg gctggggtga ttggggcgat tggaacgaca atagcaacaa caataatagc 661 cttagcaacg aggccttgct ggagccatcg gggcaactgc tcgaggactc cttcaatgtc 721 cagtcctcgc caggcagttg gcaagccttt gccaccggca atagtgtcaa taacaatgtg 781 gagctgccgc ctccaacgga tcagcaggca gcatcattgc ctcagcagcc ggaggttggt 841 caggaacccg aactggatgc cattgtgccg ccccaggctt tccaaaacca gccaccaaca 901 tcactttctg cgtttgctgc accaccattt gctgtggtag ctcctccagc gcctcttgcc 961 ggcggggtag ctcctccagc gcctcttgcc ggcgtggtag caccaccaac ggacgccgct 1021 ggcattgcac caccggctgc actgccgccc agcttgactc cagcggctgg caatcccttc 1081 aagcgctccg cgggcctcaa taagcgagtg aacataatgg ccagtccggc gggcggagct 1141 ccttcaccac cagcaccggc tgtagcgcca ttagctcctc cagttgcccc gcctcccggg 1201 gaggcccatg gcgatggctt caacttgctg gcggcaccac ctgttgaggc ttcaccaggt 1261 gccccaattc ctgcagcaac cgcatcgctg tacgctcagc cagcggtgga caaccaggag 1321 gtgttgtccg cccctaatga cgagcgggcg cagtacctgc agacgagtca cctgtccgag 1381 cagctgggcg agggcgaggc ggatcaggat gcgggtctgc tgccgccacc gggcttgtcc 1441 cgtctggttc tgggccagcc ggagctggac tcgcagcagc agcgcctggt caccggcgcc 1501 acggagcagc cggcgctcga tgtcgcccag gcggctgccc tgcacatgca ggagcgtcag 1561 gcggacggcg aggacacctc ggacgacggc gggcagcaag tgcgcaatat acagacgcca 1621 ccgcgtcgcg tcgtcacggg cgtggagacg aacgcaccat cgttgaggga gcaggtgctg 1681 gatggtgaga atctggagga tcgcgaagcc attccgccac cagcgctggc cgaacttccc 1741 ccgacattgt cggtacatca caatattcag cccgatgagc cggagctgca gctgcatcac 1801 atcaaccaac cgccgcaggc agtcaccccg caaccacagc aaccacagca accgcagcta 1861 cctcttctac agcagcagca gccgcaacag caggagaaga agcgggcggc ggcgggggga 1921 cgtcgcgcga atgcctcgct ggatctggag tccgaggacg agtcggatga gttcctgcag 1981 agcgaaaggg agcgcgatcg ggagcgcgag cgccgggatc tgatggacga gcggcagggc 2041 cgcggacgca gccatggtca ctacacctac gatggcgaaa cggaggactc ggtacgcggt 2101 gctgcccacc acgagaccaa atcgctgagg gaaacgcagc acaggcggag caacaatcac 2161 gactcgacgc gatcgcgtcg ccatccagcg gaaccgaagg ccgagcggga aagggaaagg 2221 gagcgggaac gggataggga gcgtgagcgg cactggcggc gacgctcgaa taagtatcac 2281 agtggcggcg aggatcagga gcgttcgtac gatcattcgc gtcgctacaa caacagcaac 2341 tacgacggcg aatcggataa tcccgagatc aatcatctcg gcgagggaga actcgatggc 2401 ggaggcactg agggaagagg aggtggtggc cggagcagta aaaccggccg cagccagcga 2461 cgcagcgccg ccgaggagcc gtcgttcgac tactacgaac cggaacgcga tcgtgatcac 2521 gatcgtcaat actccagacg ctccaacaaa cagccatcgt cggccgacaa atcgcgatcg 2581 tcgggcggac gacggagcta cgagaatcag ggacgcagtg gccgcccaga ggagggtcgc 2641 cgacgtcacc aggatctgcg gaactgggac ggtggctacg aggagtaccg ccggaagagc 2701 tcgcgcaaca gtgatctcga gaaggagcgc atcaacggag gcaacaccag cggcggcggc 2761 ggcggtggca gcggaggagg tggttccggt tccggcaagc gtcgcaatca gtatgatcag 2821 tatggcggtg cctacgattc gtactccatg tacgagcaga tgtcgcgcaa tccgcatgcc 2881 tatgccgata tgtacgccaa gttctacggc cagatgatca actcgatgac ggcggccgct 2941 gtctcggcgg ctgcctcgaa gtccggagtt cctggcggcg cagcagcagc agcagcagcg 3001 attcctggct tggtgcccgg cgctgttccg gtgagtgccg cccagttggt ggccgccgcc 3061 gccgccgcaa gcggaggcag tgtcagcggg agcagtgaag ccgccctgct gagggagcga 3121 gaaaggtata cacacgcata cataacccaa gccaatgaat tccatcgcca acaatacaaa 3181 gagctgatct accagcaaca acaacaacaa caacaacagc aacatcacag ggaggatccg 3241 ctaaactcga gttttaacat tacggaggat aatgccagtt tttacggatc acgaggagga 3301 tccatctata accaatacca tccatatcct tcgctctcca gtgcccgctc gttgagcaat 3361 ttaaacggcg atggacgcaa ttcccgatgc ggaccgtatt acgctggttc cgagtgcggt 3421 ctcgatatca gagctgctgc cgaagcggca ccatcgacct acggtggatt ggccaccgct 3481 ggaacggtga ccaccaccgc ggtggctcgt ccgccgcgcc gacgcacgcc cctgcagttc 3541 aaccggcccc atttggtggc ctcgtacgcg atgagtctgc tgctgaaggt gaagcccaag 3601 tacgccggcc gcgggcgttt gcgcaacgat gtggaggtgg cgccgccgcg catccgcgac 3661 ggaacgagca gcctgctgcg catgtatccg ggtcccctgc agggccgcaa gctgcacaag 3721 gacaagatca tcagcttctg caaggaacag atccgactgg gacccaccaa gggctgcacc 3781 gtgctctatg ccacccagaa gagtccgcag ggcagcgtgg tcaagtaccg tgcctcgcat 3841 gcgctcatgt ggcacctgct catactgctg ctgcgccaaa atgggtacat tgccgacact 3901 gatgtgggcg atctgttgct ggagaaccag caggagtatc cctacgagcc cagcgagtac 3961 gaggcggaga acgagccgga tgttgaggct gaacaggagg ccgcagctcc cggggagaag 4021 tcagtggaat cggatttaga cagcgaatcg gcagcgggag cagctgcagc cacgccagag 4081 gaaacaccag ccggtggcgc aaccaatgga ggcgatgcgg gagctccaca atcgcctctg 4141 tcggaacagg cggccacgga caagttccgc agctatgtgc tgcgcggcaa cgtcgaggag 4201 gccctccagt gggccaccga caatggcctg tggacgcacg cctttttcct ggccctctac 4261 gaggatcgct acgccctgac ggatgtcgcc cagaagttcc tcaatcgcgc gatcaaggcc 4321 aacgatccgc tgcagacgct ctaccagatg aagagctgcc agacgccggc gtgcgtcagc 4381 cagctgaggg acgagcagtg gggcgactgg cggtcgcatc tctccattct ggtgacgaac 4441 aagagccgcc agccgaagta cgatcgcagc tcggtggtgg cgctcggcga cacgctcttc 4501 cagcggggcg acatctatgc ggcgcacttt tgctatctgg tggcccagga ggagttcggc 4561 cgctacgata gctcggccac agagctaacc acattgaccg ccaatgtgcc cagactcatc 4621 ctgctgggct cctcgcacta caagcacttc aatgagttcg ccagcaacga ggccatcatc 4681 atgacggaga tctacgagta tgctcgctcg ctgttcgatc ccaagttcag cattgcccac 4741 ttccagcact acaagttcct gctggccacc aggatcctcg actatggcca gcacttccgc 4801 tgcaccaatt acttggagca aatcgccagg cacatcgagc tgaagccgga gagttacgac 4861 attgatttta tacagagggt ctgcggtttg gccgaacgcc tgcgctacca tgatcccatc 4921 ctgatcaatc gcgtctcttt tgcgagtccc ccaaatgccg ccagcaagga tagcgctgcg 4981 cccgaggaga aggcctggct gcgtcagctg cgctccctgg ccgatgtgca gccccagcag 5041 gagcaattgc aattgcatca tcaagtgcag cagcagcagc aggagcagaa cgacatcgat 5101 cagcagtttg ccgaggtgaa caagcagttc agagagctga acatgcagta cgatggtggc 5161 aatctggaga gcacgctgca aacgcaattg cctccagtgg agcagcagca gcagccagct 5221 cagtcagagg tgcctccgcc gcaacaacaa tactatgaac cgccaccagc agcagcagca 5281 gcagcagccc aagtgccagc agaatcggat ccctatggac agcagcaggg atcctactac 5341 gatcccaatg caggaatgca gcatcaatac gatcccaatg ctgggataca gcaccaatac 5401 gatccgaata ccgaggccca ccatcagtac gaacatggcc aaatagagcc tgcaagtgag 5461 gcctaccaac cagcagcaga tccttcagct gctcccgctg gctatggcta tgattactgg 5521 tcgggcaccc agcagccacc gtatggcgat gagcctgcgt taaaggatga ggcggaggag 5581 gaggaggatg agcagcagat attgcagcag gcacagcagc agcagcaatt gcgcgtggcc 5641 aagcagcaac aggagcaaca tactcgcacc aatggcgccg ccaacagcaa caacaatcgc 5701 ttcaagtcga atgctttgaa gcaggaaaaa ggcagcagca tcactgcatt gcgaaaaagg 5761 caggaggctt cgagaacagc aactatagcg gcggcagcag cagcaattgc ccaaataaca 5821 ccagctaaag ttgcaacagc agcagcagca gcaacgacga cggcagcaac atcggcaaag 5881 gcattcaatt tgaatgatgt aagtagcttt tcccacatac ataaacgaca tcaagctacc 5941 agcagcagca gcagcaacaa caaaccagca acagcaacag cagcagcagc aactttcaca 6001 acagtagctg ctcttcctaa tcaattacca agttgtagaa agtctaacag ccagaataga 6061 acgtacttag gcacgccaaa aacgctaacc acgcccacac gtttcattgc cgccaaagca 6121 gccacagtta cagccacgcc cacagcgccc accactttga cgaccacgtc gacgtctcta 6181 ggtgcccggg gatcgtccac gaagcgggtt aactttaatc tgcccacaac aatagctgaa 6241 tcggaacagg aattccagca tgagctgaac tttgaggagg cggacgagga gcaggaagag 6301 gtggaggagg acgaggagga gaacgccttg gctctggcgc aggccagacc aagtgggcat 6361 ctgtcgcgca aaccgcatat tgtcttcaac ggcacctatc ccattgacat gcccctgacg 6421 cagagcaaga gcagctcgta tgatccggag gccaatgcag atcgcggcga cttgcagcgc 6481 tataggaact acatgctcca cgactatgtt atcgatgagg atgccgaggg cgaggagcag 6541 gcgcaagagg agcaggagga ggacgagtat gcggacgagg atctattccc ctatgcccac 6601 gacgcggatg agagcttcga tgatggcgat tactatacgc acgagctgct caacaagtat 6661 gggattatac cgagcaaaga gggcgctcag agaacgccgg ctaccgtgga ggcagccacc 6721 attaccagca actcggcctc gaagccgcag catgtgtggt ccatggagga gctgatagcc 6781 aatccggcca taccgctcaa ctacaagaaa atgtgcaccg aggtggagca gagtctcagt 6841 cgatttgaga gctatctgga tagcaagaag gagcaacagc agatgccacc gcctttggcc 6901 gcagtgcgca ccttcgacat cgatgcaccc acgcgccggg gccaccggag cagcacttca 6961 tccgcgaatg ctggcttggc tcttagatct aagaagaaat tgtaaacaaa ctcagagaaa 7021 gaaatgtaga aaagaaggag ccagtgcaac gctgctttta cttcctcctt ctttgttttt 7081 ttttgtaagc tttctgtacc tggacaagcg tcttaactat aagtagtcct aatgatgccc 7141 ccaagcaatc tctgtaatca ctaagcctta tataccgata ataattgtga gaaagagttt 7201 tttgactgcg ccagtttatt tgccatgttt ccgttgttca ttcgattcga actaacccat 7261 aactactttg ttactaaccc aagcctaaac actctgccta agatctatga ctactactta 7321 tgactaaacc gattgcttct cgccgaagac taatccaatg ccatttctta actccaactt 7381 caatttcgcc atcc