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LOCUS XM_017149839 5455 bp mRNA linear INV 09-DEC-2024 Sin3A (Pits), mRNA. ACCESSION XM_017149839 VERSION XM_017149839.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017149839.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5455 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5455 /gene="Pits" /note="Protein interacting with Ttk69 and Sin3A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108062960" CDS 577..2442 /gene="Pits" /codon_start=1 /product="interferon regulatory factor 2-binding protein 2" /protein_id="XP_017005328.2" /db_xref="GeneID:108062960" /translation="MSLQTKRQHCYLCDLPRMPWAMINDFSEAVCRGCVNYEGADRIE AVLDAARQMKRLHPASKQQRSHENGEVSAAAAAAAVLQQQQQQQQQLQVGPVPGPGPG SHRSGGGGGGNPPGGGGPGPSVTGGPLGSLGNAVAVAAAAAAAVHHHHPMPYQMPVPR IGPPLDYPVKLEDAPGGGVRPVRISHMTPHHLPPNATRGGGGGGGGPGSGVPTAGSGG PGSNLPPALSVNLKRPPSEDVDVDVSQQQQQQQQSAHGLPPDGAGASAVVGGGGGGPP GIKRSAMDDPTGGGGRPPLTRGESLPAAVSYVPERQLSGLRDKQQPVRAPSFDASTFK AEHMSPASRRNGSSPPSGPLPPRSVHSPNSSGSSSGRRSSGSRHVSSTTVTSSEVGGS NPGQAVVAGGLGGGGGGGPGSNAASGPLSGPNGGSGQLSCSSGGPGGSASSGGNGALG PASMAPNSVAGDGSPAGGSGPSGSNGSGGAVNPGPGSSGSQGGGGGTPLASGGGSAGS GGLGGAPGSSAASNSAAAAAAAAAQNATLKCTLCQERLEDTHFVQCPSVNHHKFCFPC SRESIKRQNGLGNEVYCPSGDRCPLANSVIPWAFMQGEITTILGEEVKVKKERES" misc_feature 592..747 /gene="Pits" /note="Interferon regulatory factor 2-binding protein zinc finger; Region: IRF-2BP1_2; pfam11261" /db_xref="CDD:463250" misc_feature 2185..2355 /gene="Pits" /note="variant of RING finger, HC subclass, found in interferon regulatory factor 2-binding protein IRF-2BP1, IRF-2BP2, and similar proteins; Region: vRING-HC_IRF2BP1-like; cd16511" /db_xref="CDD:438174" polyA_site 5455 /gene="Pits" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cagcgagttt tgtggcgtcc ggttgatttt tccgttattc gctgcgtcgc tgcgttctcc 61 tcgttcgttt tgttcctcca cgtttttggc gtcgtcgtac gtttacgtgt cccgctctcc 121 atctctctct ctccctctct ctcgcttgcg cgcggactct cgcgcgaagt gtgtgtgtgt 181 ggtgtgtgta ttggtgtgtt gagcagcgca gcgcaataga aaacattagt gaattttttt 241 cgggtgaacg gcgcgctgtg aaaaatgcgt gcgtgtgtgt gtgcgtgtgc gaaaatcaat 301 atgaaaacat gaataacaaa agctaataaa aaaggaaaca cacacggcac aggcacagaa 361 aatcgagaga aaaggcgaaa agaataagaa caaacagttg gcgttggcgt tggcgttggc 421 cccaccatcc attcccattc caattccagc gagtgaggag aaggagatat ttccagcata 481 gccgagattc caaatccgat tccagcaagt tgcaggttcc aggttccagt ttccagcctt 541 ccaggttccc gtaccccgca cagtcacagc cacacgatgt cgctgcaaac gaaaaggcag 601 cactgctact tgtgcgacct gccccgcatg ccctgggcga tgatcaacga cttctcggag 661 gcagtgtgcc gcggctgcgt caattacgag ggcgccgatc gcatcgaggc ggtgctggac 721 gccgcccgcc aaatgaagcg tctccatccc gccagcaaac agcagcgttc gcacgagaac 781 ggcgaagtct ccgctgccgc cgccgcagcg gccgtcctcc agcagcagca gcagcagcaa 841 caacagttac aagtgggccc cgttccggga ccaggacccg gttcccatcg cagtggcggg 901 ggcggcgggg gtaatccccc cggaggcggc ggtccaggac catcggtcac tggcggaccg 961 ctcggctcgc tgggcaacgc ggtggccgtc gctgccgccg ccgccgctgc cgttcatcac 1021 caccatccga tgccctacca aatgcccgtg ccgcgcatcg gtccgcccct cgactatccc 1081 gtcaagctgg aggacgcacc cggcggcggc gtgcgacccg ttcgcatctc ccacatgacg 1141 ccccatcacc tgccgccgaa tgcaacgcgc ggcggcggag gcggaggcgg cggacctgga 1201 agcggcgtgc ccacggcggg cagcggtggt ccgggcagca atctaccgcc cgccctgtcc 1261 gtcaacctta agcgaccgcc cagcgaggac gtcgacgtgg atgtcagcca gcagcagcag 1321 cagcaacagc agtcggccca tggcctgccg ccagatggcg ctggcgcctc ggccgttgtg 1381 ggcggcggcg gcggtgggcc gcccggcatc aagcgcagcg ccatggacga tccaacgggc 1441 ggaggcggcc gaccgccgtt gacgcgaggc gaatccctgc ccgcagcggt cagctatgtg 1501 cccgagcggc agctgagcgg tctgagggat aaacaacagc ccgtgagagc gcccagtttt 1561 gatgcctcga ccttcaaagc agagcacatg tccccggcca gtcgacgcaa tggatcgagc 1621 ccgccctcgg gaccgctgcc cccgcgcagc gtacactcgc cgaacagctc gggttcctcg 1681 tcgggacgtc gttcatccgg atcccgtcac gtgtccagca ccaccgtcac cagctccgag 1741 gtgggcggct cgaatccggg ccaggcggtg gtggccggcg gccttggagg cggtggtgga 1801 ggaggacccg gctccaatgc cgccagcgga cccctgagcg ggccgaacgg cggcagtgga 1861 cagctaagct gcagcagcgg cggaccgggc ggcagcgcca gctccggagg caatggagcc 1921 ttaggtcccg cctcgatggc acccaattcg gtggccggcg atgggagtcc agcaggcggc 1981 agcggaccat ccggcagcaa tggcagcggc ggagccgtga atcccggtcc cggcagcagt 2041 ggcagtcaag gcggcggagg cggcacaccg ctggccagcg gcggcggatc ggcgggcagc 2101 ggcggtctag gcggagctcc tggcagcagt gccgcctcga attcggcagc ggcagcagct 2161 gcggcggctg cccagaatgc cacgctcaag tgcaccctgt gccaggagcg tttggaggac 2221 acgcacttcg tgcaatgccc ctccgtgaac caccacaagt tctgctttcc ctgcagtcgc 2281 gagagcatca aacgacagaa tggcctgggc aacgaggtgt actgtcccag cggcgatcgc 2341 tgtccgctag ccaactcggt gattccgtgg gccttcatgc agggcgagat caccaccatt 2401 ctgggcgagg aggtcaaggt gaagaaggag cgcgagtctt aatgtccatt ttactgtaag 2461 aagctgcgca gggctttgga gcgtttttga gaggcgaaag gcgaaaactc cccggataat 2521 ataatataat ataatatctg gcatccaacg ctcgacacta ctctctgttg agtcactgga 2581 gcaacggatt ttttttggcc acggcggcgg catcttagca gcagcagaca tgaatataac 2641 aatgctctgt cttttgtcca tgacgaccga ccaaacaaca acaacagcaa cagcaagaga 2701 aaaccacaat tttgtaggcg taagcaacaa aaacaaacta aatatgaaat cacttaaatg 2761 aaaaatgcaa tttgttacca gcaaaaagag tttaacacca aaacgctcgc aaatgagaga 2821 tgaaaatgta agcgaaagcg ttgaaacaca tttttgtagt tggagaattt gtccaaaaac 2881 accaaccaac caacacgaaa cttctacaaa aattgcatac gtagccaagt gagaaagtga 2941 aagattttcg aaccgaaaaa gagggagaaa cttgaaatat ttcttaataa caaaagcagt 3001 aaactaaaat caacctaatt gtagaatgca gaagcaagcg gcagatcaca aaggaatata 3061 cacttgctgg cattagatat aaaatccttt tttttaatac gattatacat aaaaacctat 3121 atattatacg ataaatatta attctgttat gtaggcgagc gattatttca taagttacat 3181 ttagtttgta ctaattaatt aatttatttc tatacatgtt gcctaattta caatctacat 3241 tttaccctcc ttccctcaca tttttacgtc ttacgttttt tttttaaata ttatttttat 3301 ttttataaat accttttatt cttttttttt ttttgtaatt ttaactaatt taaaagaact 3361 taatgaaaaa agcgaatgga aaagaaagag agaaaaacag ttattatgct aaagaattgt 3421 acatacgtat gcataccaca taatcggaat ataaatatat acatatattt aataatatag 3481 aaatatattt gatgttgaac acaaaattgg cggcaaaaaa agaaactggc cactggcaac 3541 actccaaaaa aactcggagt tgcagtggaa ttttaaacag acttttaaac cacagcgaat 3601 cccattcgct cactgaaaat tttagcaata ttttttgtgt ttttgaacga gggagcacaa 3661 gctcatagtc aaatgggcga cactccgctt gggtatcaga ttggcaaatg ttttttagct 3721 atatatattt agggtgcata tatagccgat gtcgctgggc aagaactgct gaaaggctga 3781 aacaaaaaca tgaaacacac accggaccaa ccaatcgaca aaaaagcaca acaaatctcg 3841 atatcggttt gaaaatttgc cagcaataca tctttttgca agcgtccaaa atcgacgcga 3901 tttgggactg ccaattgtcc tttttgcagt tcccaactca aaactaattt ataaatacgg 3961 tctcccaaag ggtttttact aggcacgaaa ggaaatccga atggagggcg agtattaaaa 4021 taaaggggga ttaagtcaag cgaatcagtc atcaaataca atttatgtat gcaaaaaaaa 4081 ggaaaataca acacatatat tcaaatagag gcacattgag ccaggcgtaa atcttgctat 4141 ttacttggac gtttaaaagt tcgataaatg aatctcgtag attttattta aatctattca 4201 acgtaattat ttcattggtt gtagttccca aacatattcc ttaccattca gtagaacaat 4261 taaatctgta tttgctttta aagaattcga ttttctgatc agaaaacaat tggtaaatgc 4321 tatcgatagc aaaattttcg attggcgata atcgatggca caaagattgc acaaaaacga 4381 aagaagcggg aaagtaagtg aaaacgtgaa ccaactgaat ttgccattat ttcttaaata 4441 gatcgttcct attcctcaat cctttaatcc tacacttttt gatttccctt cgaccggcag 4501 agcagttgca agaaaagcaa aaaataaaga ataaaaacac attttgtgat atagcctagc 4561 gagaacaaca acaagaagag catgaaatcc tggaaatcgg aattacgata tacgaaaatg 4621 ggaaatgcat gaaaagcaaa gaaaaactaa gaaaacttta aacaggctca gcacttcggc 4681 caaccagaaa acgatctcac tttctaaaaa aatgaggttc gtaattgaaa aataaaaaga 4741 aaaaaagaaa agagaagaga agagaaaaaa aaaaacgaaa aacaatttat aatgaaatca 4801 tacaataggc caataccaac gttttagcaa tctaagtcta agaaggaaac taatcgaaat 4861 tttctttaca acaaaactaa actaaaacta aataataact aacgtttgta aaccttgtgc 4921 gtgtgtgtgt aatacagtag tgctatctaa atataataca gatcagatat cgcattatgc 4981 atcaacctta tataagtacg agtacataca tattaaaaca aaacccaaaa aaaaggaaaa 5041 tgcaaatgaa aagaaacgaa aagaagagga atataaacta tatttgtgtg tttgatgtca 5101 gtcaactaaa tgttaaagtc aactaacgat cacgtaattg tattgcatag cctataacat 5161 tttttgaacg aagcaaacca agtcgattcg atttagcatg agtatcaact ttatactaca 5221 tatacactta acgactaacg atagacacac atgtggtatg tgcgtacaac taagaggcga 5281 tgcgtaagcg gatgaagcag ccacgaaaac gaatacgaat accgagtcgg aagcggaaac 5341 ggaagtggaa gcggaagctg gcaacgatta attgattgat taattaattg attggatact 5401 ttgatgacgg gcaaaacaat taaaaatact atacaaaatc gaaagatccg tggaa