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LOCUS XM_017148901 4135 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017148901 VERSION XM_017148901.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Oct 18, 2021 this sequence version replaced XM_017148901.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4135 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4135 /gene="Npc1b" /note="Niemann-Pick type C-1b; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108062298" CDS 90..3863 /gene="Npc1b" /codon_start=1 /product="NPC intracellular cholesterol transporter 1 homolog 1b" /protein_id="XP_017004390.2" /db_xref="GeneID:108062298" /translation="MKVLLVALWLIAGVWSQAEEEAQLGCIWYGQSHLIGAHWQNLAD TRPARPLNSPTSEAIFAKRCPTLYKEYKGESGEEELSLCCDAAQIETMEAGLSQADGV FSRCPTCTRNMAQTVCAMTCAKNHTLFLTGYNAKNPSGVDYVEYIDYRIKDETVSRIY DSCDGIQHTQTGRPAMDLGCGGYNAKTCNYRRWYEFMGDVTGDYVPFQINYRWSEDAE EGSEEIYLEIDVLKCGESYEDSYACACIDCEESCPQTEAPTGPEELWKIAGLYGVTFI LALVIAIVISAFIFWGAFRGGIATSFICMPTLFGEFFYYGFRAWGTFCAKHPVLVLAL CSWAIAGLSYGIRYMTITTDPVELWAGEESQTRIEKDYFDQHFGPFYRTNQMFIKAID QTYFTHDAPSGLLNFGPAFEYNFLKEVFELQEAIMKLGLEDNEGLDKICYAPVSMAGA TVTVDHCVIQSIYGYFQHDMDRFENSYIDSNNYTINYLNQLEDCLRVPMMEDCFGTYG GPIEPGIAVGGMPKVAVGEDPDYMLATGLVITFLGRNQNDETKLEPNLKWEKLFVDFL RDYKSDRLDIAYMAERSIQDAIVELSEGEVGTVVISYVVMFVYVAIALGHIRSCRGFL RESRIMLAIGGIVIVLASVTCSLGFWGYLDVTTTMLAIEVIPFLVLAVGVDNIFIMVH TYQRLDHSKFETTHEAIGEAIGQVGPSILQTAGSEMACFAIGCISDMPAVKTFAMYAA IAILLDFLLQITAFVALMAIDERRYLDGRLDMLCCVRSGGKRSIKNDEENEGGDSRPK EVGMLETMFKNFYSPFLLSKPVKVSVLLIFTVITCLSLMVTPSIEKGLDQEMSMPKNS HVVKYFRYMVDLLAMGAPVYWVLKPGLNYSEPLQQNLICGGVECNNNSLSVQLYTQSR YPEITALARPASSWLDDYIDWLAISDCCKYNVTTGGFCSSNSKSEDCLPCERGFTENG LRPDAETFNKYIPFFLFDLPDAECAKAGRASYADAVIYTIDDEGMSTVQDTYFMQYST TSTTSEEFYSQLREVRRIAGEINAMFEENGVDAEIFAYCVFYIYYEQYLTIWGDAMFS LGMSLLAIFLVTLLITGLDITSTFIVLFMVICILINMLGMMWAWSINLNAISLVNLVV CVGIGVEFVAHIVRSFKRAEGSAQERALHSLNVTGSSVLSGITLTKFAGIVVLGFSNS QIFQVFYFRMYLGIVLIGAAHGLILLPVLLSLLGPPNKLGRSSSAEPITPTAN" misc_feature 165..3767 /gene="Npc1b" /note="Niemann-Pick C type protein family; Region: 2A060601; TIGR00917" /db_xref="CDD:273337" polyA_site 4135 /gene="Npc1b" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cttcagttag tggcgtgctg ccggcgcgac ttgtttttac tctctataat ttatttgatt 61 ttcgaacttt ttttttgaag tgccctagaa tgaaagtgct cttagtcgcc ctatggctaa 121 tagccggtgt ttggtcgcag gcggaagaag aagcccagtt gggatgcatt tggtacgggc 181 agagccatct gataggtgcc cattggcaga atctggcgga tacgcgacca gccagaccgc 241 tgaacagccc aacctcggag gcgatctttg ccaagcgctg tcctactctc tacaaggagt 301 acaagggtga aagtggtgaa gaggagctga gtctctgctg cgatgcggcg cagattgaga 361 ccatggaggc tgggttgtcc caagccgatg gagtcttctc gcgctgcccc acttgcacca 421 gaaacatggc ccagaccgtg tgcgccatga cctgtgccaa gaatcacacg ctcttcctca 481 ccggctacaa tgccaagaat cccagcggag tggactatgt ggagtacatt gactatagga 541 tcaaggacga gacggtgtcg cgaatctacg acagttgcga tggcatacag cacacgcaaa 601 ccggtcgacc ggccatggat ctcggttgcg gtggctacaa tgccaagacc tgcaactatc 661 ggcgatggta cgagttcatg ggcgatgtca ccggtgacta tgtccccttc cagatcaact 721 accggtggtc ggaggacgcc gaggagggtt ccgaggagat atatctcgag atcgatgtgc 781 tgaagtgcgg cgagagctac gaggatagtt atgcgtgtgc ctgcatcgat tgcgaggagt 841 cctgcccgca gacggaggcg ccgacgggtc ccgaggagct ctggaagatc gccggcctgt 901 atggggtgac cttcatcttg gccctggtca tcgccatcgt gatttcggcc tttattttct 961 ggggcgcttt caggggtggc attgcaacga gctttatctg catgcccacc ctgttcgggg 1021 aattcttcta ttatggtttt cgagcctggg gcaccttctg tgccaaacac cccgtcctcg 1081 tgctcgccct ctgctcctgg gccatcgcgg ggctgagcta cggcatccgg tacatgacca 1141 tcaccacgga tcccgtggag ctgtgggccg gcgaggagag ccagacgagg atcgagaagg 1201 actacttcga ccagcacttc ggcccgttct atcgcaccaa tcagatgttc atcaaggcca 1261 tcgatcagac atatttcact cacgatgctc ccagtggcct gctgaacttt ggtcctgcct 1321 tcgagtacaa cttcctgaag gaagtcttcg agctgcagga ggccatcatg aaactgggcc 1381 tggaggataa cgagggcctc gacaagatct gctatgcccc cgtctcgatg gccggcgcaa 1441 cggtgacagt cgaccactgc gtcattcagt cgatctacgg ttacttccaa cacgatatgg 1501 atcgttttga gaattcctat atcgacagca ataactatac gatcaactat ctcaatcaat 1561 tggaagattg tcttcgggtt cccatgatgg aggactgctt tggcacttat ggtggaccca 1621 tcgaaccggg catcgcggtg ggcggcatgc ccaaggtcgc cgtgggcgag gatcccgact 1681 acatgctggc caccggtctg gtgatcacct tcctgggtcg caaccaaaac gacgagacca 1741 agctggaacc gaatctcaag tgggagaagc tgttcgtcga ctttttgcgc gactacaaga 1801 gcgatcgact ggacatagcc tacatggccg aaaggtccat ccaggatgcc attgtcgagt 1861 tgtccgaggg cgaggtgggc accgtggtca tcagctatgt ggtgatgttc gtctacgtgg 1921 ccattgccct gggtcacatt cgcagctgtc gcggtttcct ccgcgagtct cgcataatgc 1981 tcgccatcgg gggcatcgtc atcgttttgg cctcggtcac ctgcagtctg ggcttctggg 2041 gctacctgga tgtgacgacc accatgctgg ccatcgaagt gataccgttt ctggtgctcg 2101 ccgtgggcgt cgataatatc ttcataatgg tgcataccta tcagagactg gatcactcga 2161 agtttgagac cacccacgag gcgatcggag aggccatcgg ccaggtgggc ccttcgatcc 2221 tccagacggc gggcagtgag atggcctgct ttgccatcgg ctgcatatcg gatatgccgg 2281 ctgtgaaaac ctttgccatg tatgccgcca tcgccatcct cctggacttt ctgctccaga 2341 tcacagcctt tgtcgccctg atggccattg acgagaggcg ttatttggat gggagactgg 2401 atatgctgtg ctgtgtgagg agcggtggca agaggagcat caaaaatgat gaggagaacg 2461 agggcgggga tagcagaccc aaggaggtcg gcatgctgga gaccatgttc aagaacttct 2521 attcaccctt cctgttgtcc aaacccgtaa aagtgtccgt gctgctgatc ttcaccgtca 2581 tcacatgcct ttcgctgatg gtgacgccct ccattgagaa gggcctcgat caggagatgt 2641 ccatgccgaa aaactcgcat gtggtgaagt acttccgcta catggtcgac ctgctggcaa 2701 tgggagctcc ggtttactgg gttctcaagc ccggactcaa ctactcggag ccgctgcagc 2761 agaatctcat ctgtggcgga gtcgaatgca acaataactc actgtccgtc cagctctaca 2821 cacagtctcg ttatccggaa atcacggcat tggcccggcc agcctcctcc tggctggacg 2881 actatatcga ttggctggcc atcagcgatt gctgcaagta caacgtcacc accggcggat 2941 tttgttccag caactcgaag agcgaggatt gcctgccctg tgaacgtggg tttacggaga 3001 atggcctgag acctgatgcc gagaccttca acaagtacat accgttcttc ctcttcgatc 3061 tgccagatgc ggagtgcgcc aaggctggaa gagcctccta tgctgatgcc gttatctaca 3121 ccatcgacga tgagggaatg tccactgtac aggacaccta ctttatgcag tactccacca 3181 catcgaccac ctcggaagaa ttctactcgc agctgcggga agtgcgaaga attgcgggcg 3241 agatcaatgc gatgttcgag gagaacggtg tggatgcgga gatattcgcg tactgtgtgt 3301 tctacattta ttacgaacaa tacttgacga tctggggcga tgcgatgttc tcgctgggca 3361 tgtccttgct ggccattttc ctggtcaccc tactgatcac cggcctggac atcacctcca 3421 cgttcatcgt gctcttcatg gtcatctgca tactcatcaa tatgctgggc atgatgtggg 3481 cgtggagcat taatctgaac gccatttccc tggttaatct ggtggtttgc gtgggcattg 3541 gcgtggagtt cgtggcccac attgtgaggt ccttcaagcg ggcggagggt tcggcccagg 3601 agcgggctct tcactccctc aatgtcacag gaagcagtgt tctttcgggc ataacactaa 3661 ccaaatttgc cggcatcgtt gtgttgggct tctccaattc gcagatcttc caggtcttct 3721 acttccgcat gtatctgggc attgtcctta tcggagcggc tcacggcctg atcctcctgc 3781 ccgttctgct cagtctcctc ggaccgccaa acaaattggg caggagctcg agtgccgagc 3841 ccatcacacc caccgccaac tgatcgggat tatttttacc atatatatcc ctaaatttat 3901 ctttataaat atctaccata tctttagcct gctaagtgtg cctgaacttt ttgtgtgtgc 3961 ctggaatcgt gtgtatgcct gatctgattt ttgccattag cgacgagccc aaaaatgtcc 4021 aaatggccga acaaaattga tagagacaat taaatcttta ataaaataat ttatgtaagc 4081 ctaaactaaa ctcatttcta aattaaagat aatttttatc cttccaactc ttcca