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LOCUS XM_017148893 7103 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017148893 VERSION XM_017148893.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017148893.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7103 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7103 /gene="ldd" /note="lipid droplet defective; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108062294" CDS 444..6392 /gene="ldd" /codon_start=1 /product="ATP-binding cassette sub-family A member 13 isoform X2" /protein_id="XP_017004382.2" /db_xref="GeneID:108062294" /translation="MRMHLSGREVRELLRKDLLVRWRQKGLSLILLAWPVAIFMLLYL IRLKYGSEEVDACQYPTRLLPTKNQVVPAAFSYICSIENRCQSAHPYEEYSHWKEAPL HSVIDVVNAFVTDERLHKAVVELAEKANFVSAITTLITSDRLDIIRSNISEIISLVPE IERRMNYSFDIKHLFSNRETFVKLGVLLCGHPFPNTDTIPLVNEILESEDFSQTNDAE LDAMPTKYCKRLYRDVTSTNQGKLTWNTIKPIIQGRILYTPANVMTDSVVKFSNATFE ELDRLKQLSRAAATILHKLHTNATFQEAFDNLLKLAKSPLVKSLVGDDFDIGEIERVF QYIRTNQLIYDILTTVADLMDCVSADRFEAVESVEELQKRAYELNQNKLFLAALNLED VGLRQSSYRLHMDTDNTQPTFENRNRFWFPGPAGSMVIDLKYHRGFVQLKQMVDLGII KSKRNETGFPATEDPLEAGRSLSGLFSIKHTDDDVSDEDDDDDLDLSLEGSGAEGATE KVSNQESSTKQEPVEVTTEEEVGVTTEQPAVSGEPDLLLLNNEDVLKRSKRQGLFDLL GGLGGSGDKKKNKFEVDDMQFYTKQFPYPAFLNDVFKRGLYLAQGVQVAYLLGLVVFV ALCVRERIWMRESRNSMLMRSMGLKAHSELVAWALMSFLELCAIFVLISGVLYSGGIL GYTNWFFMMFYCLSFGICLISFCYMCSNFFNSANIGAVASALLFFISLCPFIIVLMFD AKLSVFESFLVDLSFTTAFAKGWGELMRMELQQEGLTLGHLVQVGPARSECAMALLMF LLDFLLYAVIGLAYQRFKRNNYSFVKVSRSQLDDKLGASLANVTKLYGSKCAVSNLSL DFARNQVSCLLGRNGAGKSTLIKLLTGQIRQTSGKVLLAGEHQVGVCWQDNILIPTLT AREHLHLYARIKMQPGESSGGEEEIQSEVERTLQSLNFGQHESYPSWQLSGGYRRRLC VAIAFIASPSVVILDEPCNGVDAKARKDIWQLIERLRQGRAVIFATHFLDEAKYLSDS LVIMRNGRIIAQHSRDSLQRLCTSNYSIRMRCADATEVTYIVQKAQQLLPRSQVIHSG ASDHPHNLTISASYSEHLTPGAVEFLELLQSQESTSGISDVELTSSSSLEQEFEQLNR NPEETATAPRRANGGGGVVAGPAMISEDPPTPCQQFGLLMGKRLRHLSRNYRLLLYVL LLPALFELCAMWFVSYRLEDDFDTVLPLSRELYPKSAQFLSQQQATSFSEKLYPGLRT SCDQLGGECREFTNSEEAYEWVLSSWDEYRERRYGGYGLNASGATVWYNNKGYHSMLA WLNDLNSELLRTTLNDSESSILTLNEPWKLGYAELSTSSILRQAGDGSMVFILLIAFG LVVAAGSVYLVNERVNGEKLQQRLCGVSAVTYWLVAFVWDYLVMVLGLIVCLAVILMF GMPVFVDRQQLVGIIGLSLAFSFACVPAVHVAEKIFSDSSIAIVTIFCANLIIPLVTM GIVLILGVVGDGPAWDSWRHALNQAFLVFPIHALGDGFLELCKNYMVALVFRRYDIDS YKHPLASDLLGRHFTALLLVGVAGLILNVLIEWHLLRKVWQRVERMLDCTYRRELDKM GQLKLVNIQSIFKSCVAAGEAVRAENLWLAYRRGRYAVRQVHFGVQRGECFGLLGKNG AGKSTIFKLLTGQLQPNVGHIYFEQPGVSYCPQSNPLDPLLTASECIRFYGRLRGIRD LEQFLDRVLDTYELRPYKDIQVRNLSGGNRRKLTVAVTCCGCAPTVLMDEPTSDMDPV TRDLVYATIEQLLLARRAVVLTSHSVSEIEHLCQRVAVLRAGQVIASDTPERLKAEHG GYYAVTCFCGPAQQAVLSRSLSSRLPGARDLQHYAHSLRFLVRIRSPGSPNSDAPLLS ELFAILRDICVDVARFSLSRCRFETVFERILDNCESANGTNGIHKDHQPQQDARKDLP SKSAAVGGSLETGYIHCGYEETRT" misc_feature 978..6344 /gene="ldd" /note="retinal-specific rim ABC transporter; Region: rim_protein; TIGR01257" /db_xref="CDD:130324" polyA_site 7103 /gene="ldd" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tagtcaagct cagttcaatt gcggccagct ttgttggcgg acgtctcagg cggcactttt 61 ataccaaaaa attaaagaaa acaaaactaa aaactaaaac taagccgaaa tcttcttgca 121 ttttttttaa ctgtgctaac tgtgcgaacg agaggaaaac cccgagaaaa gcgacacgaa 181 aagagtaaaa actcttaata aaacggtgtg tgaagtaaac aattgcagtg accgaaaaac 241 ctttagcaga aaaaaataag agataaaaga aataccagcg aagaagaaga accagaagca 301 gcaacaacaa cacgtttagc gggacaaaga caaagatgcc cgagtgatcg agttggaaca 361 gcgatcggga aaagtgggaa aagtgaaagg aagcggaagc ggagcaggag caggaggaga 421 ggtcagaggt cggagaagcg aggatgagga tgcacctgag tggtcgcgag gtgcgggagc 481 tgttgcgcaa ggacctccta gtgcgatggc gccagaaggg cctcagccta atcctgctgg 541 cctggccggt ggccatattc atgctgctct acctgatccg cctgaagtac ggatccgagg 601 aggtcgacgc ctgccagtat cccacccgct tgctgcccac caaaaaccag gtggtgcccg 661 ccgccttctc ctacatttgc agcattgaga accgctgcca gtcggcgcat ccctacgagg 721 agtactccca ttggaaggag gcgcccctgc actccgtgat cgatgtggtg aatgccttcg 781 tgaccgacga acgactccat aaggccgtcg tggagctggc cgagaaggcc aattttgtgt 841 cggccatcac cacgctgatc accagcgatc gtctcgatat catacgaagc aacataagtg 901 aaataatctc tctggtgccc gaaatcgaac gacggatgaa ctatagcttc gacatcaagc 961 atttattttc gaatcgcgag accttcgtga agctgggcgt cctgctgtgc ggccatcctt 1021 tccccaacac cgataccata ccgctggtca acgagatcct ggagtcggag gactttagcc 1081 agacgaatga cgccgagctc gatgccatgc cgaccaaata ctgcaagcgc ctctatcgtg 1141 acgtgacctc cacgaaccag ggcaaactca cctggaacac catcaagccg atcatccagg 1201 gtcggatttt gtataccccc gccaatgtga tgaccgacag cgtggtgaag tttagtaatg 1261 ccacctttga ggagctggac agactgaagc aactttcccg agcggcggcc accatactcc 1321 acaaattgca cacgaatgcc accttccagg aggccttcga caatctgctc aagctggcca 1381 aatcgccgct ggtcaagagt ctggtcggcg atgacttcga tattggggaa atcgagcggg 1441 tattccagta tattcgcacc aatcagctga tatacgacat cctaaccacg gtggccgatc 1501 tgatggactg cgtgtcggcg gatcgtttcg aggcggtgga aagtgtggag gagctgcaga 1561 agagggccta cgaactgaat cagaacaaac tttttctggc cgccctcaat ctggaggacg 1621 tgggtctgcg gcagtcctcc tatcgcctgc acatggacac ggataatacg cagcccactt 1681 tcgagaaccg caatcgattc tggttccccg gacccgccgg cagcatggtc atcgatctca 1741 agtaccatcg tggcttcgtt cagctcaagc agatggtgga tctgggaata atcaagagca 1801 aacgaaatga gacgggtttc cccgccaccg aggatcccct ggaagctggc cgctccctga 1861 gtggtctatt tagtatcaag catacggatg acgacgtctc cgatgaggac gacgatgatg 1921 atttagatct tagtctagag ggaagcggtg cagaaggggc caccgaaaag gtgtcgaatc 1981 aagaatcttc aaccaaacag gagcctgttg aggtcaccac cgaagaagag gttggggtca 2041 ccaccgaaca gccggcggta agtggtgaac ccgatcttct gctgctcaac aatgaggatg 2101 ttctgaagcg atccaagcgt cagggactct tcgatttact cggaggattg ggaggatctg 2161 gagataagaa aaaaaataaa ttcgaggtgg acgatatgca gttctacacc aaacagtttc 2221 cctatcccgc ctttctaaac gatgttttta aacgtggctt gtacttggcc caaggtgtcc 2281 aggtggccta tctactaggt ctggtggtct tcgtagctct ttgtgtgagg gaacggattt 2341 ggatgcggga gagccgaaat agcatgctga tgcgatcgat gggcctgaag gcacattccg 2401 aactggtggc ctgggctctg atgagtttcc tggagctctg tgccatcttc gtgctaatca 2461 gtggagtcct ctacagtggc ggcattttgg gctacaccaa ctggttcttc atgatgttct 2521 actgcctgag ctttggcatt tgtctgattt cgttctgtta catgtgctcg aacttcttca 2581 attcggcgaa tatcggagcc gtggcctcgg cccttttgtt tttcatcagc ctgtgtccct 2641 tcattattgt cctgatgttt gacgccaagt tgagtgtctt cgagagcttc ctggtggacc 2701 tctcgttcac cacggccttc gccaagggct ggggtgagct gatgcggatg gagctgcagc 2761 aggagggcct gaccctgggc cacctcgtcc aggtgggtcc ggcgaggagc gagtgcgcca 2821 tggcgcttct catgttcctg ctcgactttc tcctatatgc ggtaatcggc ctggcctatc 2881 agcgtttcaa gaggaacaac tatagctttg tcaaggtcag ccggtcgcag ttggacgaca 2941 aactgggtgc ctcgctggcg aatgtgacca aattgtacgg cagcaagtgc gccgtttcca 3001 acctgagcct ggactttgcc cgcaaccagg tgagctgtct gctgggccgg aatggagccg 3061 ggaagagcac gctgatcaag ctgctgaccg gccaaatccg ccagaccagc ggcaaagtgc 3121 tcctggccgg ggagcaccag gtgggcgtct gttggcagga taacatactc atacccacgc 3181 tgacggcccg cgagcacctg catctgtatg ccaggatcaa gatgcagccg ggtgagagca 3241 gcggcggtga ggaggagatc caatcggagg tggaacgcac cctgcagagc ctgaactttg 3301 gccagcacga gtcgtatccc tcgtggcagc tctcgggggg ctacagacga cgcctctgcg 3361 tggccatcgc cttcatcgcc tcgcccagcg tcgtcatcct ggatgagccc tgcaacgggg 3421 tggatgccaa ggccaggaag gacatctggc agctgatcga gcgactgcgt cagggaaggg 3481 ccgtcatctt tgccacccac ttcctggacg aggccaagta cctcagcgat tcgctggtga 3541 taatgaggaa tggtcgcatt attgcccagc acagccggga ttccctgcag cgtctgtgca 3601 cctcgaacta tagcattcga atgcgatgtg ccgacgcgac ggaagtgacc tacattgtcc 3661 agaaggccca gcagctgctg ccccggagtc aggtgatcca ctcgggagcc tcggatcatc 3721 cgcataattt gaccatcagt gccagttatt cggagcactt gacgccggga gccgtggagt 3781 ttttggaact cctgcagtcg caggagtcta cttccggcat cagcgacgtg gagctgacga 3841 gtagctccag tttggagcag gagttcgagc agttgaacag gaatcccgag gagactgcaa 3901 ctgctccgcg acgagctaac ggcggtggtg gagtggtggc cggaccagcg atgatctcgg 3961 aggatccacc gacgccctgc cagcaatttg gactcctgat gggcaagcga ttgaggcatc 4021 tgtccaggaa ttaccgactc ctgctctatg tcctcctgct gcccgctttg ttcgagctgt 4081 gcgccatgtg gttcgttagc tatcgactgg aggacgactt cgacacggtg ctgcccctga 4141 gtcgtgagct gtaccccaag tcagctcagt tcttgtcgca gcagcaggcc accagtttct 4201 cggagaagct gtatcctggg ctaaggacct cctgtgatca actgggcggg gaatgcaggg 4261 agtttaccaa ctccgaagag gcctacgaat gggtgctcag ttcctgggat gagtatcgcg 4321 agcggcgcta tggaggctat ggattaaacg cctcgggtgc caccgtttgg tataataaca 4381 agggctacca ctcgatgttg gcctggctga acgatctcaa ctcggagcta ctgcgaacga 4441 ccctcaacga ctcggagtcg agcatcctga ccttgaacga accctggaaa ctcggctatg 4501 ccgaactgag caccagctcg atcctccgcc aggctggcga tggatccatg gtcttcatcc 4561 tgctgatagc cttcggtttg gtggtggccg ccggttcggt ttacctggtc aacgagcggg 4621 tcaacgggga gaagctgcag cagcggctgt gcggcgtgag tgccgtcacc tactggctgg 4681 tggccttcgt ctgggactat ctggtcatgg tcctgggact gatcgtctgc ctggccgtca 4741 tcctcatgtt cggaatgccc gtcttcgtgg accgccagca gttggtgggc atcattggac 4801 tgtcgctggc ctttagcttc gcctgtgttc ccgctgtcca tgtggccgag aagatcttca 4861 gcgactctag cattgccatt gtaacgatct tctgcgccaa cctcatcatc ccactggtca 4921 ccatgggcat agtgctcatc ctgggcgtgg tgggcgatgg tccggcgtgg gatagttggc 4981 gccacgccct caaccaggcc ttcctcgtat tcccgattca cgctctgggc gatggcttcc 5041 tggagctgtg caagaactat atggtggccc tggtattccg gcgctacgac atcgattcgt 5101 acaagcatcc actggccagt gacctgctcg ggcgccactt caccgccctt ctgctggtgg 5161 gcgtggccgg gctcatactc aacgtcctca tcgaatggca tctgctgcgg aaggtgtggc 5221 agcgcgtgga gcgaatgctg gactgcacct atcgccgcga gctggacaag atgggccagc 5281 tgaagctggt gaatatccag agcatcttca agagctgcgt tgctgctggg gaggcggtgc 5341 gggcggagaa cctctggctg gcctaccgcc gcggtcgcta tgcggtgcgc caggtgcact 5401 tcggtgtcca gcggggcgag tgcttcgggc tgctgggcaa gaacggggcc ggcaagtcca 5461 ccatcttcaa gctgctcacc gggcaactgc agcccaacgt gggacacatc tacttcgagc 5521 agcccggtgt gtcgtactgc ccgcagagca atcctctgga cccgctgctc accgcgagcg 5581 agtgcatccg gttctacggc cgcctgcgcg gcattcgcga cctggagcag ttcctcgatc 5641 gcgtgctgga cacctacgag ctgcgtccct acaaggacat ccaggtgcgg aatctgagtg 5701 gcggcaacag gcgcaagcta acggtggccg tcacctgttg cggctgcgcg cccaccgttc 5761 tcatggacga gccgaccagc gacatggatc cggtgacccg ggatctggtc tacgcgacca 5821 ttgagcagct gctcctagcc cgtcgggctg tggtgctcac ctcgcactcg gtgtcggaga 5881 tcgagcacct gtgccaacgg gtggcggtgc tgagggcggg ccaggtgatc gccagtgaca 5941 ccccagagcg actgaaggcg gagcacggtg gctactatgc cgtcacctgc ttctgtggcc 6001 ccgcccaaca ggccgtcctc tcgagaagtc tgagctcccg cctgccaggt gcgcgggatc 6061 tgcagcatta tgcgcacagt ttgaggttcc tcgtgaggat ccgatcgccg ggaagcccaa 6121 actccgatgc cccactcctc tccgagctct ttgccatcct gcgagatatt tgcgtggacg 6181 tggctcgctt ttcgctgagt cgctgtcgtt tcgagacggt tttcgagcga atcctcgaca 6241 actgcgagtc ggcgaatggc accaatggca tccacaagga tcaccagccg cagcaggatg 6301 ctagaaagga tctgcccagc aagtcggctg ctgtgggtgg atccctggaa accggctata 6361 ttcactgtgg ctacgaggag acgagaacct aaaggccgca ctctcatttt aagaccaaaa 6421 agaaccaaat tcaaatcccc aatagttttt ttttgttaag taataatggc ttttatgtgt 6481 gacttttcaa aagtttaaat tacgtcaatt ataaaataaa tttgtgtata aaaatgatag 6541 cagaatttgc gctttaaaaa tatttgaaaa atctgcttta ttaatattat tttgaattat 6601 aattattttt tacaataata ttgacaatta ttatcactta aaatattcac atacttaaat 6661 ttgacaaaat gacaaaaaaa aaattttata gggcttcact ttatggtttt tgaaaaataa 6721 ttaaataaca gtgaatttct tataaaagct tggaaaaaat atccaacaaa aatctgtaaa 6781 tttgtatctt tttttctaat ttttttgtat aataatgtaa taggtagacc agttttttgt 6841 gataagatgt gataagtttc tgcccacgtg gcaataatat tcacttaatt ccgggtgttc 6901 tgtttagcca ttaagatcct tttcccttgc cccaaaaata ttatacccct agagctttaa 6961 tattaataaa tatgtactgt acatttagat ttaaataggt acgtgtatct gatgtatatt 7021 aagcggaatc cttataggat ctgtctgaag ttttgtattg caatttgata actaataaag 7081 tgaacgatgt atatacattt aaa