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LOCUS XM_017146938 3186 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017146938 VERSION XM_017146938.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146938.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3186 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3186 /gene="betaCOP" /note="coatomer subunit beta; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108060984" CDS 149..3022 /gene="betaCOP" /codon_start=1 /product="coatomer subunit beta" /protein_id="XP_017002427.1" /db_xref="GeneID:108060984" /translation="MTSQVPCYTIINSPDLEVPNEMQLKQDLEKGDTNVKIETLKRVI KLLLNGERYPGLIMTIIRFVLPVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVCDA YRKDLQHPNEFLRGSTLRFLCKLKEPELLEPLMPAIRACLDHRHSYVRRNAVLAIFTI YKNFDWLVPDGPELIASFLDTQQDMSCKRNAFLMLLHADQERALNYLASCIDQVHSFG DILQLVIVELIYKVCHANPAERSRFIRCIYNLLNSSSNAVRYESAGTLITLSLAPTAI KAAASCYIELVVKESDNNVKLIVLDRLVAMKEHEGMEKVMQDLVMDVLRVLAAPDIEV RRKTLALALDLVYSRNIGEMVLVLKKEVAKTHNVEHEDTGKYRQLLVRTLHTCSIKFP DVAANVIPVLVEFLSDTNELAAADVLVFIREAIQKFPALRALIIEHLIEAFPQIKSSK IHRAAVWILGEYVEGAQILEVIAVIQQTLGEVPMVEAEQRRLAGDQTEEQQQQQQQRE EGAPGAGNASNKVTSDGTYATQSAYSLAPVAKAEKRPPLRQYLMDGDFFIGAALSATL TKLALRYADLQPEARAQNRLTTQVMLIMSSILHLGKSGFPSKPITNDDTDRIFVCLRT LSERTPEAVAVFTLFCREALGKMLDAQHDEDQRMLKEKQKAAAKVQPDDPVLFAQLSN GRDNQLGENVFESSLNQALAGSKNAQLSDVASPNSKLNKVTQLTGFSDPVYAEAYVNV NQYDIVLDVLIVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVS STENGIIFGNIVYDTALNTNVVVLNTIHIDIMDYIIPASCTDTEFRQMWQDFEWENKV TVNTSFTDLHEYLKHLLKSTNMKCLTPEKALSGQCGFMAANMYAKSIFGENALANLSI EKPVDDPDSKVTGHIRIRAKSQGMALSLGDKISSSQKQSVQAA" misc_feature 197..1813 /gene="betaCOP" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 2159..2584 /gene="betaCOP" /note="Coatomer beta C-terminal region; Region: Coatamer_beta_C; pfam07718" /db_xref="CDD:462245" misc_feature 2600..2986 /gene="betaCOP" /note="Coatomer beta subunit appendage platform; Region: Coatomer_b_Cpla; pfam14806" /db_xref="CDD:434227" polyA_site 3186 /gene="betaCOP" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgaaatccca aaatcaatcc aatcgcacac acaagtgaca cgtcggaaga gagagaaaaa 61 gcgaaggaat tggaaatcgg ggaagcaggc gcagcaaata tacatattga gaacccgacc 121 aggatcagga tcacagccag gtgccacgat gacgtcgcaa gtgccgtgct acacgataat 181 caactcgccg gacctcgagg tgcccaacga gatgcagctg aagcaggatt tggagaaggg 241 cgacacgaac gtcaagatcg aaacgctgaa gagggtgatc aagctgctgc tcaacgggga 301 acgctacccg ggcctcatca tgaccatcat ccggttcgtg ctgcccgtgc agaaccatac 361 gatcaagaag ctgctgctga tcttctggga gattgtgccg aagacctcgg cggacgggaa 421 gctgctgcag gagatgatcc tggtgtgcga tgcgtatcgc aaggacctgc agcaccccaa 481 tgagtttctg cgcggctcca cgctgcgttt cctctgcaag ctgaaggagc cggagctcct 541 ggagccgctg atgcccgcca ttcgcgcctg cctggaccac cggcactcgt atgtgcggcg 601 caacgccgtc ctggccatct tcaccatcta caagaacttc gactggctgg tgccggatgg 661 cccggagctg atagccagct tcctggacac ccagcaggac atgagctgca agcggaacgc 721 cttcctgatg ctcctccatg cggatcagga gcgggccttg aactatttgg ccagctgcat 781 cgaccaggtg cactcgtttg gcgacatcct gcagctggtc atcgtggagc tgatctacaa 841 ggtctgccat gccaatcccg ccgagcgttc gcgcttcatc cgctgcatct acaatctgct 901 caactccagc tcgaatgcag tgagatacga gtcggcgggc acgttgatta ccctttcgct 961 ggctccgacg gccatcaagg cggccgccag ctgctacatc gagttggtgg tcaaggagag 1021 cgataataat gtgaagctga ttgtcctgga ccgcctggtg gccatgaagg agcacgaggg 1081 catggagaag gtgatgcagg acctggtgat ggacgtcctg cgtgttctgg ccgctccaga 1141 catcgaggtt cgcaggaaaa ccctcgcttt ggccttggac ctagtctatt cgcggaatat 1201 cggcgaaatg gtgctggtcc tcaagaagga ggtggccaaa acgcacaacg tggagcacga 1261 ggacaccggg aagtaccggc agctgctggt gcgcaccctg cacacctgct ccatcaagtt 1321 ccccgacgtg gccgccaatg taatacccgt actggtggag ttcttgtcgg acacaaatga 1381 actggctgcc gccgatgtgc tggtctttat acgcgaggcc atacaaaagt tcccggcgct 1441 gcgggcgctg atcattgagc atctgatcga ggccttcccg cagatcaagt cgtcgaagat 1501 ccatcgcgcc gccgtctgga ttctgggcga gtatgtggag ggcgcacaga tcctggaggt 1561 gattgccgtc atccagcaga cgctgggcga ggtgcccatg gtggaggccg agcagcgtcg 1621 cctggccggc gatcagacgg aggagcagca gcagcagcag cagcagcggg aggagggagc 1681 ccctggcgca ggcaatgcca gcaataaggt gacctccgat ggcacctacg ccacccagag 1741 cgcctacagc ctggcccccg tggccaaggc cgagaagcgg ccgcctttgc gccagtactt 1801 gatggacggc gacttcttca tcggcgccgc cctctccgcc actttgacca agctggcgct 1861 gcgctatgcg gatttgcagc ccgaggcgcg ggcacagaat cgcctgacca cccaggtgat 1921 gctcatcatg agctccattt tgcacctggg caaatccggt ttccccagca aaccgatcac 1981 caacgacgac accgatcgca tctttgtctg cctgcgcacg ctgagtgaac gcacccccga 2041 ggctgtggcc gtcttcacgc tcttctgccg cgaggctctg ggcaaaatgc tggatgccca 2101 gcacgacgag gatcagcgga tgctgaagga gaagcaaaag gccgccgcca aggtgcagcc 2161 cgatgatccg gtgctcttcg cacagctctc caacgggcgc gacaatcagc tgggcgagaa 2221 tgtcttcgaa tcgagcttga atcaggcgct cgcgggcagc aagaatgccc agctgagcga 2281 cgtggcgtcg ccgaacagca agctgaacaa ggtcacccag ctgacgggct tctcggatcc 2341 cgtctacgcc gaggcctacg tcaatgtcaa ccaatacgac attgtgctgg acgtgctgat 2401 tgtgaatcag accaacgaca cgctgcaaaa ctgcaccctg gaactggcca ctttgggcga 2461 tctgaagctg gtggagcgcc cgcatcccgt ggttttggcc ccgcacgact tctgcaacat 2521 caaggccaac gtgaaggtct cctccaccga gaacggcatc attttcggca atattgtcta 2581 cgacaccgct ctcaatacaa acgttgtggt cttgaacacc atccacatcg acatcatgga 2641 ctacatcatt ccggccagct gcacggacac cgagttccgg caaatgtggc aggactttga 2701 gtgggagaac aaggtgacgg tgaacaccag cttcaccgat ctgcacgagt atctcaagca 2761 cctgctgaag agcaccaaca tgaagtgcct cacgccggag aaggcgctgt ccggccagtg 2821 cggcttcatg gccgccaata tgtacgccaa atccattttc ggtgagaatg ccctggccaa 2881 tctgagcatc gagaagcccg tggatgatcc cgattccaag gtgacgggac acattcgcat 2941 tcgcgccaag agtcagggca tggccttgag tctgggcgac aagatcagct cctcgcagaa 3001 gcagtcggtg caggcggcct agtggacgtg caactggacg tggacgacca gccaccacca 3061 ggagcgacgt atctagacgc tacgtattcg gcacgaccgc ccgcattccg ccagcctgca 3121 acttcttcaa tttacattac acgttacact tatgcataaa gaatatatta taccttaacc 3181 ccaaaa