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LOCUS XM_017146933 2063 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017146933 VERSION XM_017146933.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146933.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2063 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2063 /gene="HisRS" /note="histidine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55 Proteins" /db_xref="GeneID:108060979" CDS 192..1772 /gene="HisRS" /codon_start=1 /product="histidine--tRNA ligase, cytoplasmic isoform X2" /protein_id="XP_017002422.1" /db_xref="GeneID:108060979" /translation="MSDTREQILEQIKVQGDLVRQLKAAKESKEKIDEEVARLLALKA KLGGDAPPTNQKFTLKTPKGTRDYGPQQMTLRQGVLDKIIQVFKRHGGEAIDTPVFEL KEVLTGKYGEDSKLIYDLKDQGGEILSMRYDLTVPLARYLAMNKISSIKRYHIAKVYR RDNPAMTKGRYREFYQCDFDIAGTYDPMLADAECVKIVSEILDTLDIGDYVIKLNHRQ LLDGMFQACGVPAESFRTICSAVDKLDKSPWADVRKEMVEEKGLDEAAADRIGEYVRL SGGAELVEQLLADEKLKAVPNAVKGLEGMQLLLKYCSIFGLEKRVSFDLSLARGLDYY TGVIYEGVLKGESAIASPASPAKTSQQNGEPGSPNEPATVGSVAGGGRYDNLVGMFDP RGKAVPCVGVSIGVERIFSVLEARAAAGGLKLRTSDVEVYVASAHKGLHEQRLKVLNQ LWEAGVKAEHSYKLNPKLLVQLQHCEEHQIPLVVVLGDAELAQGLVKLREVTTRQESN VKLEDLAAEIRRRQQAAA" misc_feature 207..341 /gene="HisRS" /note="S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic...; Region: S15_NS1_EPRS_RNA-bind; cl00349" /db_xref="CDD:469733" misc_feature order(222..224,243..245,264..266,279..281,312..314, 324..326) /gene="HisRS" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:238361" misc_feature <369..1754 /gene="HisRS" /note="Histidyl-tRNA synthetase; Region: PLN02972" /db_xref="CDD:215525" polyA_site 2063 /gene="HisRS" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cttctcacta acacggtcac actgaccacc gcgtgcagtg aatttttttt ggccagcagc 61 gcagaaaaag cagctgaaag ctggaaaaat acatcacaaa ccgccgtgtc aaagacgatt 121 gaaacaattg aaacgcgcgc ccgccttttg agaggattgc caaccgattg ccgttgttgt 181 ttctggggaa tatgagtgat acgcgtgagc agattctgga gcaaatcaaa gtgcaaggcg 241 atctcgtccg tcagttgaaa gcagcgaagg agtcgaagga gaagatcgat gaggaggtcg 301 cccgccttct ggccctcaag gccaagttgg gcggagatgc cccacccacc aaccagaagt 361 tcacgctaaa gacgcccaag ggcacccggg actatggccc ccagcagatg accctgcgcc 421 agggcgtcct ggacaagatc atccaggtgt tcaagcgcca cggcggcgag gccatcgata 481 cgcccgtctt cgagctgaag gaagtgctaa cgggcaagta cggcgaggac tcgaagctga 541 tctacgacct gaaggaccag ggcggcgaga ttctatcgat gaggtacgac ctgaccgttc 601 cgctggcccg ctacctggcg atgaacaaga tctcgagcat caagcgctac cacatcgcca 661 aggtctatcg ccgcgacaat ccggcgatga ccaagggtcg ctacagggag ttctaccagt 721 gcgacttcga cattgccggc acctacgatc ccatgctggc ggatgccgag tgcgtgaaga 781 ttgtgtcgga gattctggac accctggaca ttggggacta tgtgataaag ctgaatcacc 841 gccaattatt ggacggcatg ttccaggcgt gcggagtgcc ggccgagagt ttccgcacca 901 tctgctcggc ggtggataaa ctggacaagt ctccctgggc ggatgtgcgc aaggagatgg 961 tggaggagaa gggcctggac gaggcggcag cggatcgcat tggcgagtac gtgcgtctga 1021 gtggcggtgc cgagctggtg gagcagctgc tggccgacga gaagctaaag gctgtgccca 1081 atgccgtgaa gggtctggag ggcatgcagc tgctgctgaa gtactgctcg atctttggcc 1141 tcgagaagcg cgttagcttc gatctgagcc tggcccgtgg tctggactac tacaccggtg 1201 tgatctacga gggtgtgctg aagggcgagt ccgcaattgc ttcgcctgca tctcctgcga 1261 agacatcgca gcagaacgga gagccgggat caccgaatga gccggccacc gtgggttccg 1321 tggccggtgg cggtcgctac gacaatctgg tgggcatgtt cgatccgcgc ggcaaggctg 1381 tgccctgcgt gggcgtctcc attggcgtgg agcgcatctt ctcggtgctg gaggcgcggg 1441 cagctgccgg cggcctaaag ctgcgcacca gcgacgtcga ggtctacgtg gcctcggccc 1501 acaagggact gcacgagcag cgactgaagg tgctcaacca gctgtgggaa gcgggcgtca 1561 aggcggagca ctcttacaag ctgaatccca agctgctggt gcagctgcag cactgcgagg 1621 agcaccagat tcctttggtc gtcgtcctcg gcgacgcgga attggcccag ggattggtga 1681 agctgcgcga ggtgaccacg cgccaggaga gcaatgtcaa gctggaggat ttggctgccg 1741 agattcggcg acgacagcag gcggccgcct aggctgtaca ataattttct taaacaattt 1801 ttttttgcaa ctgatattac cgagataccg caaccgcaac cgctactgct cctaatttat 1861 gaaccaatca tccagcatcg aagtatagat tttttttcct atttgtacgt tttgtatttt 1921 ttggtgtcct ggccggaggc gccgtgtgct actatgctta ggtctacagt gtaaccatag 1981 gaataagtgc ggacaactta taccaaaatg aacgctaaaa agaaacaaat aaacgcttag 2041 gcgactcgca tttaagccgg aaa