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LOCUS XM_017146932 2345 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017146932 VERSION XM_017146932.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146932.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2345 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2345 /gene="HisRS" /note="histidine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 56 Proteins" /db_xref="GeneID:108060979" CDS 363..2054 /gene="HisRS" /codon_start=1 /product="histidine--tRNA ligase, cytoplasmic isoform X1" /protein_id="XP_017002421.2" /db_xref="GeneID:108060979" /translation="MLRSIGRQWRCSAAFQCATFQTAPSGGGRANSSGVPAQQQQRQQ QQQEQPQKQQQAQEQQQQHEQLLQIDEEVARLLALKAKLGGDAPPTNQKFTLKTPKGT RDYGPQQMTLRQGVLDKIIQVFKRHGGEAIDTPVFELKEVLTGKYGEDSKLIYDLKDQ GGEILSMRYDLTVPLARYLAMNKISSIKRYHIAKVYRRDNPAMTKGRYREFYQCDFDI AGTYDPMLADAECVKIVSEILDTLDIGDYVIKLNHRQLLDGMFQACGVPAESFRTICS AVDKLDKSPWADVRKEMVEEKGLDEAAADRIGEYVRLSGGAELVEQLLADEKLKAVPN AVKGLEGMQLLLKYCSIFGLEKRVSFDLSLARGLDYYTGVIYEGVLKGESAIASPASP AKTSQQNGEPGSPNEPATVGSVAGGGRYDNLVGMFDPRGKAVPCVGVSIGVERIFSVL EARAAAGGLKLRTSDVEVYVASAHKGLHEQRLKVLNQLWEAGVKAEHSYKLNPKLLVQ LQHCEEHQIPLVVVLGDAELAQGLVKLREVTTRQESNVKLEDLAAEIRRRQQAAA" misc_feature <564..623 /gene="HisRS" /note="S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic...; Region: S15_NS1_EPRS_RNA-bind; cl00349" /db_xref="CDD:469733" misc_feature <651..2036 /gene="HisRS" /note="Histidyl-tRNA synthetase; Region: PLN02972" /db_xref="CDD:215525" polyA_site 2345 /gene="HisRS" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tacttctcac taacacggtc acactgacca ccgcgtgcag tgaatttttt ttggccagca 61 gcgcagaaaa agcagctgaa agctggaaaa atacatcaca aaccgccgtg tcaaagacga 121 ttgaaacaat tgaaacgcgc gcccgccttt tgagaggatt gccaaccgat tgccgttgtt 181 gtttctgggg aatatgagtg atacgcgtga gcagattctg gagcaaatca aagtgcaagg 241 cgatctcgtc cgtcagttga aagcagcgaa ggagtcgaag gagaaggttt gaaaaagttg 301 caaaagaaag ttgttgcaag caaaaaaaag cataaaaaga aaattaagaa accgaaaaac 361 acatgttgcg ttcaattggc cgccagtggc gctgtagtgc tgcgtttcag tgtgcaacgt 421 tccagacggc gccctctggc ggcgggcgcg ccaactcgtc cggcgtgcca gcccaacaac 481 aacaacgaca acagcaacaa caagaacagc cacaaaaaca acaacaagca caagaacaac 541 aacagcaaca tgagcaactg ctgcagatcg atgaggaggt cgcccgcctt ctggccctca 601 aggccaagtt gggcggagat gccccaccca ccaaccagaa gttcacgcta aagacgccca 661 agggcacccg ggactatggc ccccagcaga tgaccctgcg ccagggcgtc ctggacaaga 721 tcatccaggt gttcaagcgc cacggcggcg aggccatcga tacgcccgtc ttcgagctga 781 aggaagtgct aacgggcaag tacggcgagg actcgaagct gatctacgac ctgaaggacc 841 agggcggcga gattctatcg atgaggtacg acctgaccgt tccgctggcc cgctacctgg 901 cgatgaacaa gatctcgagc atcaagcgct accacatcgc caaggtctat cgccgcgaca 961 atccggcgat gaccaagggt cgctacaggg agttctacca gtgcgacttc gacattgccg 1021 gcacctacga tcccatgctg gcggatgccg agtgcgtgaa gattgtgtcg gagattctgg 1081 acaccctgga cattggggac tatgtgataa agctgaatca ccgccaatta ttggacggca 1141 tgttccaggc gtgcggagtg ccggccgaga gtttccgcac catctgctcg gcggtggata 1201 aactggacaa gtctccctgg gcggatgtgc gcaaggagat ggtggaggag aagggcctgg 1261 acgaggcggc agcggatcgc attggcgagt acgtgcgtct gagtggcggt gccgagctgg 1321 tggagcagct gctggccgac gagaagctaa aggctgtgcc caatgccgtg aagggtctgg 1381 agggcatgca gctgctgctg aagtactgct cgatctttgg cctcgagaag cgcgttagct 1441 tcgatctgag cctggcccgt ggtctggact actacaccgg tgtgatctac gagggtgtgc 1501 tgaagggcga gtccgcaatt gcttcgcctg catctcctgc gaagacatcg cagcagaacg 1561 gagagccggg atcaccgaat gagccggcca ccgtgggttc cgtggccggt ggcggtcgct 1621 acgacaatct ggtgggcatg ttcgatccgc gcggcaaggc tgtgccctgc gtgggcgtct 1681 ccattggcgt ggagcgcatc ttctcggtgc tggaggcgcg ggcagctgcc ggcggcctaa 1741 agctgcgcac cagcgacgtc gaggtctacg tggcctcggc ccacaaggga ctgcacgagc 1801 agcgactgaa ggtgctcaac cagctgtggg aagcgggcgt caaggcggag cactcttaca 1861 agctgaatcc caagctgctg gtgcagctgc agcactgcga ggagcaccag attcctttgg 1921 tcgtcgtcct cggcgacgcg gaattggccc agggattggt gaagctgcgc gaggtgacca 1981 cgcgccagga gagcaatgtc aagctggagg atttggctgc cgagattcgg cgacgacagc 2041 aggcggccgc ctaggctgta caataatttt cttaaacaat ttttttttgc aactgatatt 2101 accgagatac cgcaaccgca accgctactg ctcctaattt atgaaccaat catccagcat 2161 cgaagtatag attttttttc ctatttgtac gttttgtatt ttttggtgtc ctggccggag 2221 gcgccgtgtg ctactatgct taggtctaca gtgtaaccat aggaataagt gcggacaact 2281 tataccaaaa tgaacgctaa aaagaaacaa ataaacgctt aggcgactcg catttaagcc 2341 ggaaa