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LOCUS XM_017146921 2684 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017146921 VERSION XM_017146921.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146921.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2684 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2684 /gene="upd1" /note="unpaired 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108060969" CDS 868..2073 /gene="upd1" /codon_start=1 /product="uncharacterized protein upd1" /protein_id="XP_017002410.3" /db_xref="GeneID:108060969" /translation="MAMARPLLLPALLLLLTAAHLPHLAQGRSTTSSGGLTQIRTVSN LSSNSNASQPAIPASSSILSPRKRHRKRNSNWIDYRNFDENTTALEWANPCGGNYHPA AAERFNRQRPRQSFNQLKRHAFREYRSLNSSQDSAIDIRNMTMWSLHTHNYKFLPKLK PNSTIALKRWYRNMQTYVASFAYLRRQQIRWDQRSITRESSTARELRELLLSSRRILC ELETAVNQTQSPRLQKQRRSGAAVATQQLQLPQISRLEMNKRLKLRTKTAGDGGHQGG SASSMPTSASSSGEADSIDMRFVKHHYYDFLRTMYQLLRRDGKRVGKSRRPRKQHKKP KSQKKNHQKKQHQMVVEQLEQQRWRSSAFQNGKEFNEVSKPAAAGGAVAGGAAGRRGK RQSRRVQRT" misc_feature 1063..1548 /gene="upd1" /note="Unpaired protein; Region: Unpaired; pfam15972" /db_xref="CDD:374263" ORIGIN 1 ccgataatca aaaatagcta gcataaatat ttgaaaattc agaattagct caaaatccaa 61 aattcgacat caaagttccc acacacactt ttctcacaag cagaagcgaa ggactggcaa 121 aggattagaa cccatcccat tgatcttcag tattcgctca ggctactctc gagttaattg 181 tctaaattaa caagtttccc ccgcccccga cacacacaca tatatatctc gccctggaaa 241 agacaaaaac aacgaaaagc gaaaaaaaag cagcaaaaca aacgcagaga aaatgttaaa 301 aaaagcgaac caaattgttc agactgttgt ccggttgcat ttgccatcgc attgaaggag 361 tttcttcggc tcggcactat catccagtca tcaaatcatc cagccatcca atcatccaac 421 cccctgagaa cccacctcca ccacaatcag gagtccagcc aaatccacca aacccaccta 481 gtctgtcgga attgaatcgc atattgaatt gaatagaatt gaatcgttgt gaaggaggag 541 aaggaatcgt agtcgcagat cgttgatcgt ctcgcgttga tgctgaaatc tgctcagttg 601 aatttacttt tgcattctcg atactcattt tgtgtctccc atatctctct ctctctctct 661 ctttctcgcc tatccccaca tatctcttcc tttttttttg gcccattatc catctgtttt 721 gtgtactgat tgcgaattac ggacatcgaa cggacagcag ttggttggca gtacgctgcg 781 accacagcta aaggcagcaa cacggcggtc aaaggcaacg gaaacggaaa cgccagtgga 841 agaggaagaa ggagaggtta ccatgcgatg gcgatggctc gtccactgct cctgcccgcc 901 ctcctgctcc tcctaaccgc cgcccatttg ccccacttgg cccaggggcg cagcaccacc 961 agcagcggcg gtctcaccca gattcgcact gtttcgaatt tgagctctaa ttcgaatgcc 1021 agtcagccag ccatcccggc tagtagctcc attttaagtc ctcgcaagcg ccaccggaag 1081 cggaacagca attggatcga ctatcgcaat ttcgacgaga acacgacggc cctggagtgg 1141 gccaatccct gtgggggcaa ctatcatccc gcggcggcag aacgcttcaa tcgccagcgg 1201 cccaggcaga gcttcaatca gctgaagcgc cacgccttta gggagtaccg cagcctgaac 1261 agcagccagg actcggccat cgatatccgc aacatgacca tgtggtcgct gcacacgcac 1321 aactacaagt tcctgcccaa gctcaagccc aattccacga ttgccctgaa gcgctggtac 1381 cgcaacatgc aaacgtacgt ggccagcttc gcgtacttga ggcgccagca gatccgctgg 1441 gaccagcggt ccatcacccg cgagtcgagc accgcccgcg agctgcgcga gctgcttttg 1501 agctcgcgtc gaatcctctg cgagctggag acggccgtca accagacgca gagtccgcgt 1561 ctccagaagc agcggcgcag tggcgctgcg gttgccactc agcagcttca gctgccgcaa 1621 atttcacggc tcgagatgaa caagcgtttg aagctgcgca ccaagacagc cggcgacggt 1681 ggccaccagg gaggcagtgc atcctccatg ccgacgtcag cctcctcatc tggcgaggcg 1741 gactcgattg atatgcgctt cgtgaagcat cactactacg acttcctgcg caccatgtac 1801 cagctgctgc ggcgggatgg caagcgggtg gggaagagtc gtcgtccgcg gaagcagcac 1861 aagaagccca agagccagaa gaagaatcac cagaagaaac aacatcaaat ggtggtggag 1921 caactggagc agcagcgctg gcggagctcg gcctttcaga atggcaagga gttcaacgag 1981 gtgtccaagc cggcggcggc aggtggtgca gttgcaggtg gtgcagctgg cagacgtggc 2041 aagcggcagt cgagacgcgt gcagcgcacg tgaaactacc atatatatta aaaagaatcc 2101 ctccccctca ggacacgccc cttagccctg tcccgcccct tgccccctta atttaaccgt 2161 taattgattg tagcttaagt aaattatttg attgccagca cagactctct ctctctcttc 2221 tcaatttcat tgcaagtatt accaaccaca ttccgtattt attgaaaaga aaaaccaacc 2281 gcagttgccg ttctagtcac ataagagcaa ccgccaatca ccctagcagt atataaatat 2341 atatatatat atatatctat gtatatccaa tggaaagtat tatttaacac atcaagcccc 2401 ctgaatttta tgtgaccttt tagtaggcta acatcataac cctaacataa ccatagcccc 2461 taggataggt tttagtctta aggcacacac acacacatct tttttttcgt aggctagctt 2521 gtgttttcga catctgtgat atagtgcttg actagttcgt atttaaccta attgtatata 2581 tagagatcat gtttaccact gcacccatat gctttcgtag gcctaagctc gcccttagaa 2641 atcgattttc gtatttatat agaaccgacc gatatatgac taag