PREDICTED: Drosophila takahashii 26S proteasome regulatory subunit

LOCUS       XM_017146904            1474 bp    mRNA    linear   INV 09-DEC-2024
            Rpt3 (Rpt3), mRNA.
ACCESSION   XM_017146904
VERSION     XM_017146904.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017146904.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1474
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1474
                     /gene="Rpt3"
                     /note="26S proteasome regulatory subunit Rpt3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins"
                     /db_xref="GeneID:108060953"
     CDS             122..1363
                     /gene="Rpt3"
                     /codon_start=1
                     /product="26S proteasome regulatory subunit 6B"
                     /protein_id="XP_017002393.1"
                     /db_xref="GeneID:108060953"
                     /translation="MPYNMDVLMPEKDELSDLKPKDAHSSLDELDTEDLYVRYKKLQK
                     TLEFIEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTT
                     GSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQPDEKPDVSYA
                     DIGGMDMQKQEIREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHT
                     TASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGA
                     DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR
                     QKRLVFSTITSKMNLSEDVDLEEFVARPDKISGADINAICQEAGMHAVRENRYIVLAK
                     DFEKGYKNNIKKDEQEHEFYK"
     misc_feature    185..1360
                     /gene="Rpt3"
                     /note="26S protease regulatory subunit 6B-like protein;
                     Provisional; Region: PTZ00454"
                     /db_xref="CDD:240423"
     polyA_site      1474
                     /gene="Rpt3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cccatcgata gtgacagcgt tgccaccccg cgcagagctg gcttgttttt gacgagtcat
       61 ttcatcgtcg tcccgcagaa aaggcaactt ataaactgaa actcactgct agacgcaaac
      121 aatgccgtac aacatggacg tactgatgcc ggagaaggat gagctctccg acttgaagcc
      181 gaaggatgcg cacagctccc tggacgaact ggacacggag gatctgtatg tgcgctacaa
      241 gaaactgcaa aagaccctgg agttcatcga agtgcaggag gagtacatca aggatgagca
      301 gaggaacctg aaaaaggagt atctccatgc ccaggaggag gtaaagcgca tccagtcggt
      361 gcccctggta atcggccagt tcctggaggc cgtcgaccag aacacaggca tcgtgggctc
      421 caccaccggc tccaattact atgtgcgcat cctgtccacc atcgataggg agctgctgaa
      481 gccctccgcc tcggtggccc tgcacaagca cagcaacgcc ttggtggacg ttctcccacc
      541 ggaggcagat agctccattt ccatgctgca gcccgatgag aagcccgatg tgagctatgc
      601 ggacattggc ggcatggaca tgcagaagca ggagattcgg gaggccgttg agctgccgct
      661 tacccacttt gagctgtaca agcagatcgg catcgatccg ccgcgcggcg tcctcatgta
      721 cggccccccg ggatgcggca agaccatgct ggccaaggcg gtggcccatc acacgacggc
      781 ctccttcatc cgcgtcgtcg gatcggaatt cgtgcagaaa tatctcggcg agggaccgcg
      841 catggtgcgc gacgtcttcc ggctggccaa ggagaacgcg ccggccatca tcttcatcga
      901 cgagatcgat gcgattgcca ccaagcgctt cgatgcccag acgggcgccg atcgcgaggt
      961 gcagcgcatt ctgctcgagc tgctcaacca gatggacggc ttcgatcaga ccaccaatgt
     1021 caaggtgatc atggccacca atcgggcgga cacgctggat cctgccctgc tgcgtcccgg
     1081 tcggctggac cgaaagatcg agttcccgct gcccgatcgc cgacagaagc gactggtctt
     1141 ctccaccatc acctcgaaga tgaacctcag cgaggacgtc gatctcgagg agtttgtggc
     1201 gcggccagat aagatttcgg gggcggacat caatgccatt tgccaggagg ctggcatgca
     1261 tgcggtgcgc gagaatcgat acatcgtcct ggccaaggac ttcgagaagg gatacaaaaa
     1321 caacatcaag aaggacgagc aggagcacga gttctacaaa tagactaagc acttcatctt
     1381 tcccattgcc catttgtccc cttctactac actaaactct cctttgtacg cctaaagtta
     1441 taaacataaa aaataaaaac aactcgtatt cgaa