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LOCUS XM_017146895 2195 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017146895 VERSION XM_017146895.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146895.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2195 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2195 /gene="Rph" /note="Rabphilin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108060947" CDS 143..2056 /gene="Rph" /codon_start=1 /product="rabphilin-3A" /protein_id="XP_017002384.2" /db_xref="GeneID:108060947" /translation="MDFQNRNNTANKFVCPSDRQLALRAKLKAGWSSSKTSEPLRPEE QEAIISVIRRNEEIEVAERQRVGRLVERVEKIKQHAVERGPNCCRLCGDAFGILRPQR ILCEDCRQSVCAKCSVDINIRYHTSERSREIWLCRICSETREMWKKSGAWFFKGLPKY DMPRSASATPIPTPGHPGSMAGDTRAVQSCHATPTRPARVKKLTIRVNDSSSSSSGHS EPEDEVDAGALGIGGITKGVSANRLQREDSFRLRAYGSIRSFIDGGERKLSNSFFFGR QQSQRPSECPEYDSVSMSKLRRESSFLRRGSVSSSWSISDSSGSGSNNSGNSQSQSQF QQQQQQHQQQQLHCRDPLLGWLEIAISYREAFHSLDCTMVRARDLPAMDAAGLADPYC KLNIITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLLYVALFDDDK YGHDFLGAAKVCLSTVHSTSQYRISVPLGVEDQYSNAAELAQNWPNGKMLLSLCYNTK RRALVVNVKQCINLMAMDNNGSSDPFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEF YFEASPHDLNKEMLILTVWDKDLGKSNDFLGSLQLGAQSKGDRLQQWLDCIRLPDHFH EKWHCLAPDNPAH" misc_feature 260..613 /gene="Rph" /note="PHD finger superfamily; Region: PHD_SF; cl22851" /db_xref="CDD:473978" misc_feature 1199..1570 /gene="Rph" /note="C2 domain first repeat present in Rabphilin and Double C2 domain; Region: C2A_Rabphilin_Doc2; cd04035" /db_xref="CDD:176000" misc_feature order(1289..1291,1307..1309,1481..1483,1487..1489, 1502..1504) /gene="Rph" /note="Ca2+ binding site [ion binding]; other site" /db_xref="CDD:176000" misc_feature 1634..2032 /gene="Rph" /note="C2 domain second repeat present in Rabphilin and Double C2 domain; Region: C2B_Rabphilin_Doc2; cd08384" /db_xref="CDD:176030" misc_feature order(1718..1720,1736..1738,1898..1900,1904..1906, 1922..1924) /gene="Rph" /note="Ca2+ binding site [ion binding]; other site" /db_xref="CDD:176030" ORIGIN 1 cgtttcgtac cgcttcgcag cctcgcagct tcgcaggctc cttgccgcca aacccgaaag 61 aaccaaacac tccgtattcc aaagccaaac agaacaggct ggagaggctc ggccccatgc 121 gaatataatg tgacaggaca cgatggactt ccagaatcgc aacaatacgg ccaacaagtt 181 tgtctgcccg agcgacaggc aactggccct gcgtgccaaa ttaaaagccg gctggagcag 241 ctcgaagacc agcgaaccgc tgcgtccgga ggagcaggag gccatcatct cggtgatccg 301 gcgcaacgag gagatcgagg tggccgagcg gcagcgggtg ggtcgtctgg tggagcgggt 361 cgagaagatc aagcagcatg cggtggagcg ggggcccaac tgctgccgcc tctgcggcga 421 cgccttcggc atcctgcggc cgcagcgcat cctgtgcgag gactgccgcc agtcggtgtg 481 cgccaagtgc agcgtggaca tcaacatccg ctaccacacc agcgagcggt cccgggagat 541 ctggctgtgc cgcatctgct ccgagacgcg cgagatgtgg aagaagtcgg gcgcctggtt 601 cttcaagggc ctgcccaagt acgatatgcc gcgcagcgcc agtgccacgc ccattcccac 661 cccgggacac cccggatcca tggcaggaga cacgcgggcc gttcaaagct gccatgcgac 721 gccgacgcgt ccggcgcggg taaagaagct aacgatccgg gtgaacgaca gcagctccag 781 cagcagcggc cactcggagc cggaggacga ggtggacgcc ggggcactgg gcattggtgg 841 cataaccaag ggcgtctccg cgaaccgact gcagcgggag gatagcttcc ggctgagggc 901 ctacggctcc atacgcagct tcatcgatgg cggcgagcgc aagttgtcca actccttctt 961 ctttggccgc cagcagagcc aacggccctc ggagtgcccg gaatacgaca gcgtcagcat 1021 gtccaagttg cgccgggaga gcagcttcct gcgtcgcggc tccgtcagct cctcctggtc 1081 gatcagcgat agttccggtt ccggatccaa caactcgggc aactcccaat cgcaatcgca 1141 attccagcag cagcagcagc aacatcagca gcagcagctg cactgccggg atccgctgct 1201 cggctggctg gagatcgcca tcagctaccg ggaggccttc cacagcctcg actgcaccat 1261 ggtgcgggcc cgggatctgc cggccatgga cgccgccgga ctggcggacc cctactgcaa 1321 gctgaacatc atcacgccgg aggcgcacac caagtacacg cggtggcagc gcaccaagac 1381 ggtgcacaag acccgcaatc cggagttcaa cgagacgctg cagttcgtcg gcgtggagcc 1441 cgaggagctg ggcaactcgc tgctctacgt ggccctcttc gacgacgaca agtacgggca 1501 cgacttcctc ggcgcggcca aggtctgcct ttccacggtg cacagcacat cgcagtaccg 1561 catttcggtg cccctgggcg tggaggacca gtacagcaac gcggcggagt tggcccagaa 1621 ttggccaaac ggcaagatgc tgctctcctt gtgctacaat acgaaacgga gggcgctggt 1681 ggtgaacgtg aagcagtgca tcaatctgat ggccatggac aacaacggca gctccgatcc 1741 cttcgtcaag atccaactca agccggatgc gcacaagaac aagaagcaca agaccagcgt 1801 caagtggcgc acgctcaatc ccatctacaa cgaggagttc tacttcgagg cgagtcccca 1861 cgacctcaac aaggagatgc tcatcctgac cgtctgggac aaggatctcg gcaagagcaa 1921 cgacttcctc ggcagcctgc agctgggcgc ccagagcaag ggcgaccgcc tgcagcagtg 1981 gctcgactgc atccgattgc ccgaccactt ccacgagaaa tggcattgcc tcgcccccga 2041 caatcccgcc cactgagaga cccatccaat ccccactcgc cccaaagtcc ccagtccaat 2101 cggttcgatc ttatctggac cgtcatggat cttttcctat aagacacatt ttcacgaact 2161 gatttctcag cccagttacg aaccggaagt ccagt