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LOCUS XM_017146891 2058 bp mRNA linear INV 09-DEC-2024 receptor alpha (SrpRalpha), mRNA. ACCESSION XM_017146891 VERSION XM_017146891.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146891.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2058 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2058 /gene="SrpRalpha" /note="signal recognition particle receptor alpha; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108060942" CDS 114..1979 /gene="SrpRalpha" /codon_start=1 /product="signal recognition particle receptor subunit alpha homolog" /protein_id="XP_017002380.2" /db_xref="GeneID:108060942" /translation="MLDFVVIFTKGGVVLWHSNASGSSFASCINSLIRGVILEERNTE AKYFEEDHLAVQFKLDNELDLVYAAIFQKVIKLNYLDGFLTEMQSAFKDKYGGIPAAE RLGGDYDFDREYRRVLSAAEEASAKQVKAPKAMRSYNESQKSKKTVASMIQDDKKPAE KRVNIQESPSPPSKSSEAAGGASMDDIIRENRRKLREKLTPTKKTSPGDQKPSKAAAT EKAGKKPRVWDLGGSSKDAINLDRSKDTPEDVQYQNINSELVGTMQGVIRDLDVESED EADEQDEEESSEEEQQELQSRKSKRGGLLSYFKGIVGAKTMTLADLQPALEKMRDHLI SKNVATEIAAKLCDSVATSLDGKQMGTFDSIASQVKEALTQSLVRILSPKRRIDIIRD ALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLR THTRHLNALHPAAKHDGRTMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGR MQDNEPLMRSLSKLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHII DGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLMK" misc_feature 195..929 /gene="SrpRalpha" /note="Signal recognition particle, alpha subunit, N-terminal; Region: SRP-alpha_N; pfam04086" /db_xref="CDD:461165" misc_feature 1017..1232 /gene="SrpRalpha" /note="SRP54-type protein, helical bundle domain; Region: SRP54_N; pfam02881" /db_xref="CDD:460734" misc_feature 1320..1970 /gene="SrpRalpha" /note="C-terminal domain of signal recognition particle receptor alpha subunit; Region: SRalpha_C; cd17876" /db_xref="CDD:349785" misc_feature order(1341..1364,1374..1376,1428..1430,1437..1439, 1455..1457,1632..1634,1830..1832,1836..1838,1908..1919) /gene="SrpRalpha" /note="active site" /db_xref="CDD:349785" misc_feature order(1344..1349,1434..1445,1452..1457,1464..1469, 1545..1547,1632..1634,1638..1646,1719..1721,1725..1739, 1746..1748,1830..1832,1836..1841,1845..1847,1917..1919) /gene="SrpRalpha" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:349785" polyA_site 2058 /gene="SrpRalpha" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gggcccaagt gacgtggaat gtgtcaactc aacttgattt gatgcaaatg caatgctaga 61 gcgtgtaaac ctggtcgcct ttgtgaaact gcgggatcgg aagcgtagct aaaatgttgg 121 actttgtggt gatcttcacc aagggcggcg tggtgctgtg gcactcgaat gcgtccggca 181 gcagcttcgc ctcctgcata aacagcctga tacgtggcgt catcctggag gagcgcaaca 241 cagaggccaa gtacttcgag gaggaccacc tggcggtgca gttcaagctg gacaacgaac 301 tggacctggt ctacgcggcc attttccaga aggtgatcaa actgaactac ctcgatggct 361 tcttaactga gatgcagtcg gcgttcaagg acaagtacgg cggcattccg gccgcggagc 421 gtctgggcgg cgactacgac ttcgataggg agtaccggcg ggtgctcagc gccgccgagg 481 aggcctccgc caagcaggtg aaggccccca aagccatgcg ctcatacaat gagtcgcaaa 541 agtcgaagaa aacagtggcc tcgatgattc aggacgacaa gaagccggcg gagaagcggg 601 tcaacataca ggagagtccg tcgccgccat ccaagtcgtc ggaggcagcg ggcggcgcct 661 ccatggacga catcatccgg gagaatcgtc gcaagctgcg cgagaagctc acgcccacca 721 agaagacctc gccgggcgac cagaagccca gcaaggccgc cgccaccgag aaggcgggca 781 agaagccgcg cgtctgggat ctgggcggca gctccaagga cgccatcaac ctggatcgat 841 ccaaggacac gcccgaggat gtgcagtacc agaacatcaa cagcgagctg gtgggcacca 901 tgcagggcgt catccgggat ttggatgtgg agagcgagga cgaggctgac gagcaggatg 961 aggaggagtc ctccgaggag gagcagcagg agctgcagtc gcggaaaagc aaacgtggcg 1021 gcctgctctc ctatttcaag ggcattgtgg gcgccaagac catgacgctg gccgatctgc 1081 agccggcgct ggagaagatg cgtgaccatt tgatatcgaa aaacgtggcc acggagattg 1141 ccgccaagct gtgcgactcg gtggccacca gtttggatgg caaacagatg ggcaccttcg 1201 acagcatcgc cagccaggtg aaggaggcgc tcacccagtc gctggtgagg attctctcgc 1261 ccaagcggcg catcgacatc atacgcgacg ccctggagtc caagcgcaat ggccgcccgt 1321 acacgatcat cttctgcggc gtcaatggcg tcggcaagtc caccaatctg gccaagatct 1381 gcttttggct gatcgagaac gacttcaacg tcctgatcgc cgcctgcgac acttttcgcg 1441 ccggcgccgt cgagcagctg cgcacccaca cccgccattt gaatgccctg catccggcgg 1501 ccaagcacga cgggcgcacc atggtgcagc tgtacgagaa gggctatggc aaggatgccg 1561 cgggcattgc gatggaggcc atcaagtttg cccacgacac acgggtggat gtggtgctcg 1621 tggacaccgc cggaaggatg caggacaacg agccgctgat gcgttcgctg tccaagctca 1681 tcaaggtcaa caatcccgat ctggtgctct tcgtgggcga ggcgctggtg ggcaacgagg 1741 ccgtcgacca gctggtcaag ttcaaccagt cgctggccga ctactcatcc aacgagaacc 1801 cgcacatcat cgacggcatc gtgctgacca agttcgacac catcgacgac aaggtgggcg 1861 ccgccatctc catgacctac atcaccgggc agcccatcgt ttttgtgggc acgggacaga 1921 cgtacgccga cctcaaggcc atcaacgtga acgccgtggt caactcgctg atgaagtagt 1981 tatatccctc cccttctctt tttaatgctc tttgttcaca tctccatttg accgaatcaa 2041 atacagtgct tttgtcta