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LOCUS XM_017146887 1954 bp mRNA linear INV 09-DEC-2024 arthropod-specific, member 4 (SmydA-4), mRNA. ACCESSION XM_017146887 VERSION XM_017146887.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146887.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1954 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1954 /gene="SmydA-4" /note="SET and MYND domain containing, arthropod-specific, member 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108060938" CDS 297..1880 /gene="SmydA-4" /codon_start=1 /product="SET domain-containing protein SmydA-8" /protein_id="XP_017002376.2" /db_xref="GeneID:108060938" /translation="MPGRKKNHHKNSNRAKNQRGQQSRDKQEQPVKEEEEQEEEAAPF RVAQSEIYGRYLVASRQLEAGETLIREEPLAIGPCVSGDPVCLGCYQPVTLKTDQYRC SHCAWPLCGASCAGLKRKHGHTETECQLYAERRAVAGELLTDRAGPAEVRDLYELVMI VRILLLRQHDPEQFALIARMESHTEERRLNAVLWRHYEEKVVQRLRVTWKLEDLEAEQ VHEVCGILDVNCFEIGQNGAKARTLYPSAFLLAHDCTPNTAHTDDPKSFGILLRTSRL VREREALTLSYAYTLQGTLKRRAFMHEGKLFWCRCRRCADPRELGTDCSALVCATCRA GSVRPVDPLEQTGDWACDRCSHQIGAEDVERKLDRINDDLEAIDVHDIPGLENFLLRY RDVLRPNHYLLLSAKYSLCQIYGRIEGYLLPQMSPEDIARKERYCREFLEIVDVLDPG LTRLRGLIMYELHAPVMVLAQSAIQSGQISRQEFQRRLKEVVKLLQVSRDILCLEPEG STENEMGLAAADALSKMGC" misc_feature <969..1238 /gene="SmydA-4" /note="SET domain (including SET domain and post-SET domain) found in SET and MYND domain-containing protein, and similar proteins; Region: SET_SMYD; cd20071" /db_xref="CDD:380997" misc_feature order(981..986,1008..1010,1038..1052,1155..1157, 1161..1163) /gene="SmydA-4" /note="active site" /db_xref="CDD:380997" misc_feature order(981..986,1008..1010,1038..1040,1152..1157, 1161..1163) /gene="SmydA-4" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:380997" misc_feature order(1056..1058,1221..1223,1227..1229,1236..1238) /gene="SmydA-4" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:380997" ORIGIN 1 cgtcgcggct cgaacaacgc gtggccagaa gttttattta tttattttta cttattttac 61 tgtctgtttt ttttttgttt ttctttttac tgcaatctgc tgacacaatt tattcgacgc 121 gatttacagg cacgattaat tgacgagttg ttaaacatat ctattaaatg cgagcggcct 181 tttaaataac tcgtgtgcac cgcgtaaaaa ttatcaatta aaatcaatta acaagcagcg 241 tcgggcgaaa taataaataa aataaaataa aatcaaattt aaatacaaat aaagcgatgc 301 cgggaagaaa aaaaaatcac cacaagaaca gcaacagagc caaaaaccag aggggtcagc 361 agtcgaggga caagcaggag cagccggtta aggaggagga ggagcaggag gaggaggctg 421 ctccgtttcg tgtcgcccaa tcggagatat atggccgata tctggtggcc agccgccagc 481 tggaggccgg tgagaccctc atccgcgagg agccgctggc cattgggccc tgtgtgagcg 541 gcgatcccgt gtgcctgggc tgctatcagc cggtgaccct gaaaacggac caataccgtt 601 gttcccactg cgcctggcca ctctgcggcg ccagctgcgc gggcctcaaa cgcaagcatg 661 gtcacaccga aaccgagtgc caactgtacg ccgaacggcg ggcggtcgcc ggcgaactgc 721 tgacggatcg cgccggtccg gcggaagtgc gcgacctcta cgagctggtg atgatcgtgc 781 gcatcctcct cctgcgccag cacgatccgg agcagtttgc gctgatcgcc cgcatggaat 841 cgcacacgga ggagaggcga ctaaatgccg tgctgtggcg ccactacgag gagaaggtgg 901 tgcagcgact gcgagtcacg tggaaattgg aggacttgga ggcggagcag gtgcacgagg 961 tgtgcggcat cctggacgtc aactgcttcg agatcggcca gaatggcgcc aaggcgcgga 1021 cgctatatcc gagcgccttc ctgctcgcgc acgactgcac acccaacacg gcgcacacgg 1081 acgaccccaa gtccttcggc atcctgctgc gcacctcgcg gctcgtgcgc gagcgggaag 1141 cgctgacgct cagctatgcg tacacgctgc agggcaccct caagcggcgc gccttcatgc 1201 acgagggcaa gctgttctgg tgccgctgcc ggcgctgcgc cgatccacgc gaactgggca 1261 ccgactgcag cgccctcgtg tgcgccacct gccgggcggg atcggtacgg ccggtggatc 1321 ccctggagca gaccggcgac tgggcctgcg atcgctgctc ccaccaaatc ggggcagagg 1381 atgtggagcg aaagctggac cgcatcaacg atgacctgga ggccatcgat gtgcacgaca 1441 ttcccgggct ggagaacttt ctcctaagat atcgggatgt cctgcgaccg aaccactacc 1501 tcctgctctc cgcaaaatat tccttgtgcc agatctacgg ccgcatcgaa ggatatttgc 1561 tgccgcaaat gtcgcccgag gatattgccc gcaaggagcg ctactgccga gagttcctgg 1621 aaatagtcga cgtactcgat ccgggactaa cgcgtctgag aggactcatc atgtacgagc 1681 tgcatgcccc cgtcatggtc ctcgcccagt cggccatcca aagtggacag atctcacgtc 1741 aggagttcca gcggcgactc aaggaggtcg tcaagctgct ccaagtcagc cgggatatcc 1801 tgtgcctgga acccgaagga tccacggaaa acgaaatggg tctggctgcc gccgatgccc 1861 tcagcaaaat gggctgctag ccaccgcaac tatttgtaat ttaactgagt ttaccctaaa 1921 gtaaaaatgt atctcaaaat aaaaataaca gaag